Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 199-361 |
| Cow position: | chr22:42035324-42035488 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 199-564 |
| Cow position: | chr22:2855034-2855378 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 107, 122 |
| Conread position: | 199-693 |
| Cow position: | chr22:1611171-1610702 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 200-663 |
| Cow position: | chr22:12677851-12677412 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 200-697 |
| Cow position: | chr22:4997610-4998094 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 201-613 |
| Cow position: | chr22:13956117-13956511 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 201-667 |
| Cow position: | chr22:17310300-17310753 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 201-670 |
| Cow position: | chr22:17926236-17926722 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 150 |
| Conread position: | 203-663 |
| Cow position: | chr22:30912353-30911908 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 204-312 |
| Cow position: | chr22:744242-744132 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 204-345 |
| Cow position: | chr22:18994211-18994070 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-490 |
| Cow position: | chr22:24921914-24921630 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 132 |
| Conread position: | 204-598 |
| Cow position: | chr22:10627837-10627447 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 176 |
| Conread position: | 204-661 |
| Cow position: | chr22:2941559-2941996 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 142 |
| Conread position: | 204-663 |
| Cow position: | chr22:41500955-41501397 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-666 |
| Cow position: | chr22:17363005-17363450 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 204-678 |
| Cow position: | chr22:27077148-27076698 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 102 |
| Conread position: | 205-668 |
| Cow position: | chr22:302621-303071 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 206-567 |
| Cow position: | chr22:41684986-41685337 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 115 |
| Conread position: | 206-661 |
| Cow position: | chr22:8040503-8040932 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 139 |
| Conread position: | 206-674 |
| Cow position: | chr22:31381069-31381518 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 118 |
| Conread position: | 207-477 |
| Cow position: | chr22:18695684-18695424 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 141 |
| Conread position: | 207-661 |
| Cow position: | chr22:8033260-8033696 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 207-663 |
| Cow position: | chr22:735345-734909 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 99 |
| Conread position: | 207-668 |
| Cow position: | chr22:8121100-8121554 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 207-668 |
| Cow position: | chr22:27748377-27747892 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 131 |
| Conread position: | 207-670 |
| Cow position: | chr22:35530684-35531136 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 207-672 |
| Cow position: | chr22:26787157-26786727 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 207-672 |
| Cow position: | chr22:39458820-39459275 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 207-697 |
| Cow position: | chr22:674890-674386 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 211-361 |
| Cow position: | chr22:17874606-17874455 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 113 |
| Conread position: | 211-556 |
| Cow position: | chr22:28401729-28401373 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 95, 214 |
| Conread position: | 211-660 |
| Cow position: | chr22:2527016-2527452 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 211-660 |
| Cow position: | chr22:13929148-13928710 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 211-667 |
| Cow position: | chr22:19970903-19971343 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 42 |
| Conread position: | 211-669 |
| Cow position: | chr22:19093535-19093076 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 138 |
| Conread position: | 213-341 |
| Cow position: | chr22:16547363-16547234 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 215-597 |
| Cow position: | chr22:8133337-8133717 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 123 |
| Conread position: | 234-670 |
| Cow position: | chr22:6438250-6437828 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 112 |
| Conread position: | 247-670 |
| Cow position: | chr22:6702998-6702579 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 259-509 |
| Cow position: | chr22:27389663-27389403 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 362-648 |
| Cow position: | chr22:18994012-18993729 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 402-672 |
| Cow position: | chr22:18698451-18698718 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 402-690 |
| Cow position: | chr22:2002361-2002072 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 416-671 |
| Cow position: | chr22:23842301-23842058 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 418-639 |
| Cow position: | chr22:12752606-12752824 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 420-672 |
| Cow position: | chr22:32067509-32067752 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 421-662 |
| Cow position: | chr22:744079-743854 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 424-615 |
| Cow position: | chr22:311448-311642 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 437-670 |
| Cow position: | chr22:2377064-2376831 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 437-670 |
| Cow position: | chr22:3420948-3421181 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 448-670 |
| Cow position: | chr22:42035547-42035772 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 5 |
| Conread position: | 450-648 |
| Cow position: | chr22:39503459-39503264 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 460-660 |
| Cow position: | chr22:17874211-17874015 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 505-680 |
| Cow position: | chr22:27389036-27388861 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.