Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 193-659 |
| Cow position: | chr23:37975410-37974956 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 200-672 |
| Cow position: | chr23:19676336-19676806 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 197 |
| Conread position: | 201-509 |
| Cow position: | chr23:6094139-6094435 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 105, 76 |
| Conread position: | 201-668 |
| Cow position: | chr23:37712610-37713088 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 160 |
| Conread position: | 202-468 |
| Cow position: | chr23:23016375-23016630 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 204-608 |
| Cow position: | chr23:14495227-14495623 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 204-659 |
| Cow position: | chr23:39713742-39714222 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 101 |
| Conread position: | 204-661 |
| Cow position: | chr23:6216259-6215824 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 205-663 |
| Cow position: | chr23:37664599-37664131 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 222 |
| Conread position: | 206-470 |
| Cow position: | chr23:18859055-18858797 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 143 |
| Conread position: | 207-353 |
| Cow position: | chr23:19637198-19637050 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 207-659 |
| Cow position: | chr23:10542334-10542797 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 211 |
| Conread position: | 209-367 |
| Cow position: | chr23:22724097-22723940 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 210-687 |
| Cow position: | chr23:40912914-40912467 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 211-352 |
| Cow position: | chr23:35164442-35164582 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 51 |
| Conread position: | 211-468 |
| Cow position: | chr23:23042341-23042587 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 211-470 |
| Cow position: | chr23:23087849-23088099 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 211-492 |
| Cow position: | chr23:38705159-38704886 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-550 |
| Cow position: | chr23:33993355-33993703 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 211-656 |
| Cow position: | chr23:4547617-4548068 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 120 |
| Conread position: | 211-672 |
| Cow position: | chr23:22874462-22874024 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 213-497 |
| Cow position: | chr23:33619095-33619375 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 213-668 |
| Cow position: | chr23:4829454-4828981 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 216-598 |
| Cow position: | chr23:20767192-20767555 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 106 |
| Conread position: | 234-666 |
| Cow position: | chr23:41375328-41374892 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 245-660 |
| Cow position: | chr23:13097627-13097198 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 180 |
| Conread position: | 245-663 |
| Cow position: | chr23:33450063-33449667 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 278-648 |
| Cow position: | chr23:26311421-26311080 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 168, 67 |
| Conread position: | 323-525 |
| Cow position: | chr23:5713035-5713228 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 395-672 |
| Cow position: | chr23:19637039-19636764 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 402-671 |
| Cow position: | chr23:26203643-26203898 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 409-597 |
| Cow position: | chr23:2537353-2537536 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 418-670 |
| Cow position: | chr23:26270180-26270430 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 424-671 |
| Cow position: | chr23:9727764-9727520 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 427-648 |
| Cow position: | chr23:22278607-22278824 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 431-615 |
| Cow position: | chr23:26993539-26993721 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 438-648 |
| Cow position: | chr23:22244973-22245188 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 147, 69 |
| Conread position: | 438-663 |
| Cow position: | chr23:26758434-26758647 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 201, 42 |
| Conread position: | 480-668 |
| Cow position: | chr23:31557810-31557998 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 108, 26 |
Show alignments to all cow chromosomes.