Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 198-660 |
| Cow position: | chr24:27254497-27254031 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 13 |
| Conread position: | 199-663 |
| Cow position: | chr24:23686850-23686407 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 123 |
| Conread position: | 199-668 |
| Cow position: | chr24:17844717-17845200 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 149 |
| Conread position: | 201-663 |
| Cow position: | chr24:9095910-9096347 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 204-361 |
| Cow position: | chr24:239261-239416 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 204-537 |
| Cow position: | chr24:33446464-33446144 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 204-672 |
| Cow position: | chr24:35552831-35553283 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 207-663 |
| Cow position: | chr24:24901688-24902119 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 120 |
| Conread position: | 207-670 |
| Cow position: | chr24:2448526-2448089 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 207-680 |
| Cow position: | chr24:40523865-40524319 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 211-360 |
| Cow position: | chr24:31203557-31203706 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 129 |
| Conread position: | 211-571 |
| Cow position: | chr24:2121426-2121079 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 211-660 |
| Cow position: | chr24:26680101-26680542 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 94 |
| Conread position: | 211-672 |
| Cow position: | chr24:11907633-11907195 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 211-680 |
| Cow position: | chr24:9166755-9167221 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 212-657 |
| Cow position: | chr24:42009505-42009055 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 214-506 |
| Cow position: | chr24:24646365-24646062 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 215-660 |
| Cow position: | chr24:6089372-6088919 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 132 |
| Conread position: | 225-484 |
| Cow position: | chr24:26874046-26874294 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 233-576 |
| Cow position: | chr24:17972798-17973132 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 234-660 |
| Cow position: | chr24:27333309-27332883 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 57 |
| Conread position: | 238-468 |
| Cow position: | chr24:9357161-9357383 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 108 |
| Conread position: | 247-663 |
| Cow position: | chr24:36905974-36906375 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 356-668 |
| Cow position: | chr24:6073618-6073312 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 58 |
| Conread position: | 362-682 |
| Cow position: | chr24:31203740-31204054 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 50 |
| Conread position: | 402-670 |
| Cow position: | chr24:319192-318920 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 194, 14 |
| Conread position: | 411-670 |
| Cow position: | chr24:29355993-29356249 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 423-663 |
| Cow position: | chr24:245945-246171 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 424-669 |
| Cow position: | chr24:36836436-36836196 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 424-671 |
| Cow position: | chr24:5917351-5917595 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 477-672 |
| Cow position: | chr24:26874448-26874640 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 527-670 |
| Cow position: | chr24:33445866-33445724 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 529-639 |
| Cow position: | chr24:20615840-20615729 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.