Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 182-661 |
| Cow position: | chr25:4498879-4498419 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 149 |
| Conread position: | 184-467 |
| Cow position: | chr25:30350113-30350382 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 199-312 |
| Cow position: | chr25:15451826-15451940 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 204-663 |
| Cow position: | chr25:5898976-5899410 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 205-660 |
| Cow position: | chr25:15479359-15479821 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 206-342 |
| Cow position: | chr25:6962443-6962305 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 207-498 |
| Cow position: | chr25:16812056-16811774 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 207-663 |
| Cow position: | chr25:8557029-8556595 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 89 |
| Conread position: | 211-319 |
| Cow position: | chr25:9608356-9608465 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-361 |
| Cow position: | chr25:34438504-34438652 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-647 |
| Cow position: | chr25:433592-434001 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 211-653 |
| Cow position: | chr25:22265369-22265815 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 211-657 |
| Cow position: | chr25:5868319-5868750 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 211-664 |
| Cow position: | chr25:22272413-22271951 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 211-680 |
| Cow position: | chr25:6261342-6261792 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 212-657 |
| Cow position: | chr25:15914547-15914978 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 212-660 |
| Cow position: | chr25:15632215-15632669 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 213-659 |
| Cow position: | chr25:18679671-18679244 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 213-670 |
| Cow position: | chr25:17374099-17374542 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 213-670 |
| Cow position: | chr25:31580674-31580213 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 236-663 |
| Cow position: | chr25:6257075-6257516 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 113 |
| Conread position: | 241-668 |
| Cow position: | chr25:29816522-29816957 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 243-590 |
| Cow position: | chr25:41167541-41167873 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 66 |
| Conread position: | 248-670 |
| Cow position: | chr25:26100262-26099844 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 258-543 |
| Cow position: | chr25:20247756-20248047 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 262-680 |
| Cow position: | chr25:31617338-31616924 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 402-648 |
| Cow position: | chr25:4506560-4506791 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 409-537 |
| Cow position: | chr25:23677585-23677711 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 409-615 |
| Cow position: | chr25:7668307-7668110 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 418-660 |
| Cow position: | chr25:31367936-31368179 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 418-670 |
| Cow position: | chr25:15966574-15966323 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 418-683 |
| Cow position: | chr25:9597692-9597432 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 124, 64 |
| Conread position: | 424-656 |
| Cow position: | chr25:19017839-19017609 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 430-659 |
| Cow position: | chr25:41328417-41328634 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 438-648 |
| Cow position: | chr25:8541888-8541681 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 440-670 |
| Cow position: | chr25:15961099-15960875 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 459-615 |
| Cow position: | chr25:6565936-6566094 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 540-672 |
| Cow position: | chr25:16811763-16811632 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
Show alignments to all cow chromosomes.