Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 192-576 |
| Cow position: | chr26:34993512-34993143 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 198-661 |
| Cow position: | chr26:26673749-26674193 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 198-663 |
| Cow position: | chr26:6530403-6529958 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 79 |
| Conread position: | 200-663 |
| Cow position: | chr26:19761358-19761800 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 201-468 |
| Cow position: | chr26:27157223-27156964 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 201-615 |
| Cow position: | chr26:24954321-24954738 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 150 |
| Conread position: | 201-660 |
| Cow position: | chr26:12264540-12264082 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 127 |
| Conread position: | 204-661 |
| Cow position: | chr26:35105359-35105790 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 205, 34 |
| Conread position: | 204-670 |
| Cow position: | chr26:6604724-6605161 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 125 |
| Conread position: | 204-672 |
| Cow position: | chr26:18490493-18490947 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 204-672 |
| Cow position: | chr26:18507832-18508286 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 205-667 |
| Cow position: | chr26:34857912-34857444 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 206-670 |
| Cow position: | chr26:29776422-29775952 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 207-361 |
| Cow position: | chr26:6663114-6663266 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 207-563 |
| Cow position: | chr26:375708-376056 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 144 |
| Conread position: | 207-663 |
| Cow position: | chr26:1542310-1542748 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 207-666 |
| Cow position: | chr26:34782705-34782275 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 61 |
| Conread position: | 207-671 |
| Cow position: | chr26:11053972-11054420 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 211-361 |
| Cow position: | chr26:15627860-15627713 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 211-477 |
| Cow position: | chr26:29764855-29764600 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 96, 116 |
| Conread position: | 211-613 |
| Cow position: | chr26:13743733-13743352 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-636 |
| Cow position: | chr26:11988941-11989380 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 128 |
| Conread position: | 212-597 |
| Cow position: | chr26:11823913-11823532 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 212-676 |
| Cow position: | chr26:28745423-28745012 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 213-668 |
| Cow position: | chr26:18847404-18847866 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 213-670 |
| Cow position: | chr26:12220954-12220493 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 222-648 |
| Cow position: | chr26:28459210-28458794 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 13 |
| Conread position: | 236-697 |
| Cow position: | chr26:17291249-17290807 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 243-639 |
| Cow position: | chr26:10990676-10990297 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 105 |
| Conread position: | 362-598 |
| Cow position: | chr26:2921354-2921599 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 362-660 |
| Cow position: | chr26:15627401-15627119 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 399-691 |
| Cow position: | chr26:7062067-7062357 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 102 |
| Conread position: | 403-668 |
| Cow position: | chr26:31954390-31954129 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 79 |
| Conread position: | 407-671 |
| Cow position: | chr26:28697504-28697238 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 109 |
| Conread position: | 430-669 |
| Cow position: | chr26:12886419-12886179 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 452-657 |
| Cow position: | chr26:20978272-20978069 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 533-670 |
| Cow position: | chr26:22024020-22023883 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.