Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 191-662 |
| Cow position: | chr27:30246927-30247372 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 192-517 |
| Cow position: | chr27:29451711-29452027 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 115, 7 |
| Conread position: | 200-667 |
| Cow position: | chr27:23190231-23190689 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 201-570 |
| Cow position: | chr27:2392231-2392592 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 201-660 |
| Cow position: | chr27:23877333-23877769 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 204-361 |
| Cow position: | chr27:7599448-7599292 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 204-657 |
| Cow position: | chr27:22125109-22125547 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 204-661 |
| Cow position: | chr27:18467737-18467297 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 204-663 |
| Cow position: | chr27:57866-58309 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 206-361 |
| Cow position: | chr27:7158387-7158235 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 83 |
| Conread position: | 206-370 |
| Cow position: | chr27:7596753-7596590 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 72 |
| Conread position: | 206-593 |
| Cow position: | chr27:18109971-18109574 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 5 |
| Conread position: | 206-614 |
| Cow position: | chr27:26502256-26501849 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 141 |
| Conread position: | 207-508 |
| Cow position: | chr27:30246471-30246769 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 207-670 |
| Cow position: | chr27:14333949-14333501 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 208-509 |
| Cow position: | chr27:10584796-10584506 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 209-660 |
| Cow position: | chr27:23052375-23052834 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 210-471 |
| Cow position: | chr27:9503093-9503350 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 211-361 |
| Cow position: | chr27:22568235-22568087 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 101 |
| Conread position: | 211-485 |
| Cow position: | chr27:7142089-7141822 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 129 |
| Conread position: | 211-660 |
| Cow position: | chr27:14681350-14680912 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-663 |
| Cow position: | chr27:26813387-26812937 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 211-663 |
| Cow position: | chr27:30988492-30988056 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 135 |
| Conread position: | 211-668 |
| Cow position: | chr27:3911829-3912295 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 56 |
| Conread position: | 211-670 |
| Cow position: | chr27:14139460-14138991 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 133 |
| Conread position: | 211-670 |
| Cow position: | chr27:14151766-14152218 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 128 |
| Conread position: | 211-672 |
| Cow position: | chr27:29498502-29498970 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 103 |
| Conread position: | 211-674 |
| Cow position: | chr27:21528145-21527698 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 111 |
| Conread position: | 212-663 |
| Cow position: | chr27:22803417-22803840 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 221-473 |
| Cow position: | chr27:22990299-22990055 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 85 |
| Conread position: | 243-662 |
| Cow position: | chr27:22124106-22123705 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 78 |
| Conread position: | 245-672 |
| Cow position: | chr27:29995866-29996280 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 252-663 |
| Cow position: | chr27:21601000-21601391 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 293-663 |
| Cow position: | chr27:7086137-7086494 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 339-670 |
| Cow position: | chr27:20754506-20754188 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 340-663 |
| Cow position: | chr27:29489587-29489282 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 340-668 |
| Cow position: | chr27:29358731-29359053 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 384-650 |
| Cow position: | chr27:7596549-7596278 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 402-675 |
| Cow position: | chr27:3695121-3694856 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 48, 97 |
| Conread position: | 409-669 |
| Cow position: | chr27:14181744-14181496 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 412-645 |
| Cow position: | chr27:530654-530880 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 413-683 |
| Cow position: | chr27:22567827-22567564 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 185, 67 |
| Conread position: | 424-670 |
| Cow position: | chr27:3082984-3082741 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 466-668 |
| Cow position: | chr27:7634447-7634645 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.