Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 187-668 |
| Cow position: | chr4:43465350-43465832 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 193-613 |
| Cow position: | chr4:45451751-45451357 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 195-659 |
| Cow position: | chr4:54141699-54142171 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 197-663 |
| Cow position: | chr4:47132850-47132402 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 143 |
| Conread position: | 198-670 |
| Cow position: | chr4:14423895-14424352 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 198-671 |
| Cow position: | chr4:28286253-28285797 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 198-672 |
| Cow position: | chr4:7160265-7160720 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 124 |
| Conread position: | 199-308 |
| Cow position: | chr4:67562361-67562472 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 201-468 |
| Cow position: | chr4:6654719-6654982 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 201-613 |
| Cow position: | chr4:7983735-7983355 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 105, 10 |
| Conread position: | 201-670 |
| Cow position: | chr4:61152496-61152012 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 151 |
| Conread position: | 204-490 |
| Cow position: | chr4:64152919-64152643 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 7 |
| Conread position: | 204-598 |
| Cow position: | chr4:57725393-57725770 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 204-660 |
| Cow position: | chr4:58431395-58431866 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 204-661 |
| Cow position: | chr4:29905345-29905781 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 204-663 |
| Cow position: | chr4:23122239-23122680 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 204-665 |
| Cow position: | chr4:14479951-14480413 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 205-361 |
| Cow position: | chr4:48236394-48236240 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 205-670 |
| Cow position: | chr4:3464185-3463736 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 205-670 |
| Cow position: | chr4:59532003-59531544 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 148 |
| Conread position: | 206-335 |
| Cow position: | chr4:40481510-40481379 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 206-661 |
| Cow position: | chr4:64673278-64673721 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 207-450 |
| Cow position: | chr4:63585967-63586204 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 208-660 |
| Cow position: | chr4:18005871-18006341 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 140 |
| Conread position: | 209-660 |
| Cow position: | chr4:43420396-43420835 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 211-609 |
| Cow position: | chr4:14575949-14576328 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 116 |
| Conread position: | 211-653 |
| Cow position: | chr4:38925926-38925471 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 216 |
| Conread position: | 211-660 |
| Cow position: | chr4:44622060-44621630 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 117 |
| Conread position: | 211-663 |
| Cow position: | chr4:31596419-31596863 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 211-672 |
| Cow position: | chr4:34324055-34324536 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 211-672 |
| Cow position: | chr4:65944273-65944715 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 120 |
| Conread position: | 212-591 |
| Cow position: | chr4:12702271-12701911 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 212-667 |
| Cow position: | chr4:13150740-13150301 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 68 |
| Conread position: | 213-497 |
| Cow position: | chr4:36494020-36494297 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 214-670 |
| Cow position: | chr4:44086357-44085916 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 215-669 |
| Cow position: | chr4:66836143-66835676 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 224 |
| Conread position: | 215-685 |
| Cow position: | chr4:67568347-67567896 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 90 |
| Conread position: | 216-670 |
| Cow position: | chr4:42981349-42980883 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 112 |
| Conread position: | 224-663 |
| Cow position: | chr4:41123001-41123416 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 233-672 |
| Cow position: | chr4:10979931-10980348 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 233-679 |
| Cow position: | chr4:60093712-60094136 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 102 |
| Conread position: | 245-671 |
| Cow position: | chr4:63393808-63394223 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 247-657 |
| Cow position: | chr4:45563006-45562608 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 282, 91 |
| Conread position: | 253-532 |
| Cow position: | chr4:39086254-39086529 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 297-663 |
| Cow position: | chr4:32796695-32796347 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 327-572 |
| Cow position: | chr4:27699236-27699469 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 337-658 |
| Cow position: | chr4:42485614-42485301 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 258, 12 |
| Conread position: | 379-659 |
| Cow position: | chr4:3868827-3868552 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 379-660 |
| Cow position: | chr4:32024567-32024840 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 180, 9 |
| Conread position: | 384-671 |
| Cow position: | chr4:63398547-63398820 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 153, 96 |
| Conread position: | 395-660 |
| Cow position: | chr4:11169300-11169037 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 398-682 |
| Cow position: | chr4:31422860-31423128 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 402-670 |
| Cow position: | chr4:48236162-48235901 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 409-663 |
| Cow position: | chr4:57717058-57717302 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 231, 71 |
| Conread position: | 413-572 |
| Cow position: | chr4:67562545-67562701 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 424-671 |
| Cow position: | chr4:5228714-5228955 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 424-671 |
| Cow position: | chr4:12226862-12226622 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 424-671 |
| Cow position: | chr4:14528289-14528533 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 426-565 |
| Cow position: | chr4:44753874-44754012 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 438-672 |
| Cow position: | chr4:28224020-28223791 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 147, 7 |
| Conread position: | 439-670 |
| Cow position: | chr4:12652078-12652306 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 446-622 |
| Cow position: | chr4:60726606-60726428 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 447-589 |
| Cow position: | chr4:28610145-28610278 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 453-657 |
| Cow position: | chr4:64369571-64369766 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 474-660 |
| Cow position: | chr4:36220247-36220423 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 122, 8 |
| Conread position: | 512-651 |
| Cow position: | chr4:57940950-57940814 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.