Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 182-528 |
| Cow position: | chr5:16038161-16037823 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 189-668 |
| Cow position: | chr5:21042720-21043190 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 158 |
| Conread position: | 193-615 |
| Cow position: | chr5:39801001-39800560 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 194-648 |
| Cow position: | chr5:9368457-9368895 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 9 |
| Conread position: | 198-660 |
| Cow position: | chr5:63516085-63515617 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 131 |
| Conread position: | 200-525 |
| Cow position: | chr5:67098324-67098642 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 5, 140 |
| Conread position: | 200-615 |
| Cow position: | chr5:67962229-67962615 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 201-613 |
| Cow position: | chr5:34150977-34150587 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 105, 116 |
| Conread position: | 201-657 |
| Cow position: | chr5:48275462-48275002 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 286 |
| Conread position: | 201-660 |
| Cow position: | chr5:70704824-70705274 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 202-645 |
| Cow position: | chr5:7283972-7283544 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 130 |
| Conread position: | 203-668 |
| Cow position: | chr5:47772088-47771614 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 203-669 |
| Cow position: | chr5:64104190-64103715 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 143 |
| Conread position: | 204-514 |
| Cow position: | chr5:46784533-46784214 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 184 |
| Conread position: | 204-658 |
| Cow position: | chr5:17736903-17737334 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 204-663 |
| Cow position: | chr5:47357635-47358070 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 204-663 |
| Cow position: | chr5:60969062-60969504 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 111 |
| Conread position: | 204-663 |
| Cow position: | chr5:73888137-73887694 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 204-666 |
| Cow position: | chr5:7394119-7393662 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 204-666 |
| Cow position: | chr5:23742210-23742652 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 204-670 |
| Cow position: | chr5:9969318-9969774 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 204-672 |
| Cow position: | chr5:25896600-25896128 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 206-663 |
| Cow position: | chr5:29537272-29536799 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 206-663 |
| Cow position: | chr5:46273545-46273106 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 206-668 |
| Cow position: | chr5:23628263-23628732 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 135 |
| Conread position: | 207-333 |
| Cow position: | chr5:21515261-21515134 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 117 |
| Conread position: | 207-506 |
| Cow position: | chr5:58439121-58439414 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 207-631 |
| Cow position: | chr5:5983716-5984124 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 207-656 |
| Cow position: | chr5:37371887-37372342 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 207-663 |
| Cow position: | chr5:13420779-13421219 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 99 |
| Conread position: | 207-663 |
| Cow position: | chr5:24456586-24456152 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 207-663 |
| Cow position: | chr5:56260273-56260702 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 207-667 |
| Cow position: | chr5:29075781-29076247 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 164 |
| Conread position: | 207-670 |
| Cow position: | chr5:18584790-18585279 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 286 |
| Conread position: | 211-353 |
| Cow position: | chr5:27995748-27995893 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-361 |
| Cow position: | chr5:42183879-42183730 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 211-361 |
| Cow position: | chr5:45198974-45198827 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 116 |
| Conread position: | 211-467 |
| Cow position: | chr5:67107101-67107347 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 211-469 |
| Cow position: | chr5:35335476-35335230 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 211-527 |
| Cow position: | chr5:43087005-43087330 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 211-533 |
| Cow position: | chr5:43658990-43658659 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 211-615 |
| Cow position: | chr5:47840169-47839756 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 136 |
| Conread position: | 211-660 |
| Cow position: | chr5:64038736-64039156 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 211-660 |
| Cow position: | chr5:70720916-70720489 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 211-666 |
| Cow position: | chr5:75573567-75573104 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 211-690 |
| Cow position: | chr5:73480492-73480038 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 212-660 |
| Cow position: | chr5:42785794-42785345 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 213-668 |
| Cow position: | chr5:19914343-19914797 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 214-524 |
| Cow position: | chr5:18709710-18710033 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 281 |
| Conread position: | 228-661 |
| Cow position: | chr5:1498772-1499166 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 92, 59 |
| Conread position: | 234-656 |
| Cow position: | chr5:72939818-72939388 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 92 |
| Conread position: | 234-663 |
| Cow position: | chr5:42100195-42099784 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 245-614 |
| Cow position: | chr5:53637940-53638294 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 245-663 |
| Cow position: | chr5:66106491-66106920 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 257-681 |
| Cow position: | chr5:68441500-68441894 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 259-544 |
| Cow position: | chr5:69115888-69115612 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 262-515 |
| Cow position: | chr5:8230539-8230790 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 262-670 |
| Cow position: | chr5:47619719-47619302 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 262-691 |
| Cow position: | chr5:66584308-66584714 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 356-668 |
| Cow position: | chr5:21514880-21514592 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 362-650 |
| Cow position: | chr5:2441296-2441014 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 362-652 |
| Cow position: | chr5:64796147-64796435 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 362-680 |
| Cow position: | chr5:42183424-42183110 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 374-660 |
| Cow position: | chr5:30204547-30204819 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 395-653 |
| Cow position: | chr5:32710994-32711242 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 402-639 |
| Cow position: | chr5:49920329-49920562 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 89 |
| Conread position: | 409-671 |
| Cow position: | chr5:24888622-24888879 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 412-670 |
| Cow position: | chr5:42820233-42820486 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 418-670 |
| Cow position: | chr5:47991657-47991407 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 424-635 |
| Cow position: | chr5:18775567-18775365 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 424-671 |
| Cow position: | chr5:8764338-8764582 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 424-671 |
| Cow position: | chr5:48135707-48135944 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 424-672 |
| Cow position: | chr5:47996450-47996204 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 426-666 |
| Cow position: | chr5:5058500-5058727 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 429-672 |
| Cow position: | chr5:12219214-12219452 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 437-648 |
| Cow position: | chr5:47729533-47729318 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 437-670 |
| Cow position: | chr5:18657595-18657829 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 438-604 |
| Cow position: | chr5:15192386-15192231 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 472-615 |
| Cow position: | chr5:27995957-27996096 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 472-672 |
| Cow position: | chr5:51921291-51921092 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 511-670 |
| Cow position: | chr5:58439397-58439556 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 521-668 |
| Cow position: | chr5:45197334-45197185 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 116, 26 |
Show alignments to all cow chromosomes.