Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 187-361 |
| Cow position: | chr6:55961180-55961009 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 198-530 |
| Cow position: | chr6:27734042-27734364 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 199-658 |
| Cow position: | chr6:37390004-37390445 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 199-663 |
| Cow position: | chr6:1054721-1055160 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 316 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 204-611 |
| Cow position: | chr6:5717395-5716993 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 125 |
| Conread position: | 204-615 |
| Cow position: | chr6:61542388-61542777 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-662 |
| Cow position: | chr6:26454013-26454442 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 134, 74 |
| Conread position: | 204-680 |
| Cow position: | chr6:26451002-26451456 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 205-518 |
| Cow position: | chr6:46552583-46552886 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 134 |
| Conread position: | 206-613 |
| Cow position: | chr6:27413087-27413468 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 206-615 |
| Cow position: | chr6:59297604-59297988 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 206-645 |
| Cow position: | chr6:16548721-16549163 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 174 |
| Conread position: | 206-672 |
| Cow position: | chr6:11177495-11177046 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 37 |
| Conread position: | 206-674 |
| Cow position: | chr6:61435952-61436400 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 206-677 |
| Cow position: | chr6:7496672-7497129 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 140 |
| Conread position: | 207-322 |
| Cow position: | chr6:15068548-15068664 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 207-505 |
| Cow position: | chr6:6228070-6227787 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 207-615 |
| Cow position: | chr6:1632649-1632260 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 207-652 |
| Cow position: | chr6:50265672-50266105 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 207-663 |
| Cow position: | chr6:14883137-14883558 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 207-668 |
| Cow position: | chr6:37885002-37884526 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 207-672 |
| Cow position: | chr6:26242151-26242599 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 207-690 |
| Cow position: | chr6:49801708-49801214 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 139 |
| Conread position: | 208-545 |
| Cow position: | chr6:69053771-69054108 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 209-670 |
| Cow position: | chr6:60794673-60795124 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 137 |
| Conread position: | 211-319 |
| Cow position: | chr6:48151040-48151149 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-509 |
| Cow position: | chr6:4017331-4017639 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 211-660 |
| Cow position: | chr6:38940029-38939575 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 211-660 |
| Cow position: | chr6:62859873-62860329 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 133 |
| Conread position: | 211-663 |
| Cow position: | chr6:45339525-45339955 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 306 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 211-668 |
| Cow position: | chr6:50743429-50742985 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 213-648 |
| Cow position: | chr6:38823573-38823994 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 220-663 |
| Cow position: | chr6:47226373-47225918 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 275 |
| Conread position: | 221-643 |
| Cow position: | chr6:47228559-47228972 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 233-668 |
| Cow position: | chr6:62994330-62993888 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 244-663 |
| Cow position: | chr6:60064781-60065180 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 91 |
| Conread position: | 245-666 |
| Cow position: | chr6:44495937-44496349 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 262-660 |
| Cow position: | chr6:24803512-24803921 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 281-671 |
| Cow position: | chr6:54337758-54338138 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 328-662 |
| Cow position: | chr6:53233548-53233871 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 297, 64 |
| Conread position: | 344-672 |
| Cow position: | chr6:5984180-5984503 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 362-670 |
| Cow position: | chr6:16604671-16604373 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 398-662 |
| Cow position: | chr6:15068710-15068964 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 402-650 |
| Cow position: | chr6:67782311-67782066 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 167, 56 |
| Conread position: | 405-660 |
| Cow position: | chr6:44231090-44231333 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 75 |
| Conread position: | 418-670 |
| Cow position: | chr6:97873-98114 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 424-602 |
| Cow position: | chr6:27959358-27959187 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 424-625 |
| Cow position: | chr6:23899851-23900049 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 447-681 |
| Cow position: | chr6:56910012-56909779 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 152, 35 |
| Conread position: | 462-672 |
| Cow position: | chr6:46378648-46378438 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 533-672 |
| Cow position: | chr6:4017618-4017758 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 14 |
Show alignments to all cow chromosomes.