Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 181-361 |
| Cow position: | chr7:13839770-13839950 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 5 |
| Conread position: | 196-674 |
| Cow position: | chr7:31108522-31108069 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 151 |
| Conread position: | 198-630 |
| Cow position: | chr7:37293628-37293214 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 201-487 |
| Cow position: | chr7:36905508-36905786 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 138 |
| Conread position: | 201-667 |
| Cow position: | chr7:50718185-50718665 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 202-669 |
| Cow position: | chr7:161824-161343 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 204-361 |
| Cow position: | chr7:49920506-49920351 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 122 |
| Conread position: | 204-662 |
| Cow position: | chr7:55975331-55974900 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 55 |
| Conread position: | 204-663 |
| Cow position: | chr7:5014810-5015252 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 204-663 |
| Cow position: | chr7:57380638-57380187 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 204-681 |
| Cow position: | chr7:30544997-30544533 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 206-370 |
| Cow position: | chr7:44616617-44616780 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 206-485 |
| Cow position: | chr7:45903559-45903293 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 153, 5 |
| Conread position: | 206-663 |
| Cow position: | chr7:49058950-49058511 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 207-468 |
| Cow position: | chr7:65741700-65741954 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 207-646 |
| Cow position: | chr7:41282281-41281860 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 303 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 207-660 |
| Cow position: | chr7:38469663-38470127 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 140 |
| Conread position: | 207-670 |
| Cow position: | chr7:25828511-25828962 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 207-670 |
| Cow position: | chr7:33597287-33596810 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 91 |
| Conread position: | 210-328 |
| Cow position: | chr7:47887620-47887502 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 111 |
| Conread position: | 210-663 |
| Cow position: | chr7:51756345-51755895 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 128 |
| Conread position: | 211-361 |
| Cow position: | chr7:23958869-23958721 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 211-372 |
| Cow position: | chr7:19922458-19922619 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-457 |
| Cow position: | chr7:33509663-33509422 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 113 |
| Conread position: | 211-511 |
| Cow position: | chr7:41084240-41084557 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 95, 141 |
| Conread position: | 211-649 |
| Cow position: | chr7:38811302-38810869 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 211-659 |
| Cow position: | chr7:2752857-2753291 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 211-660 |
| Cow position: | chr7:9348666-9349119 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 211-668 |
| Cow position: | chr7:25804525-25804991 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 211-668 |
| Cow position: | chr7:50754994-50754550 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-675 |
| Cow position: | chr7:40900332-40899885 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 212-672 |
| Cow position: | chr7:44186361-44186833 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 134 |
| Conread position: | 213-491 |
| Cow position: | chr7:4948179-4948443 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 213-656 |
| Cow position: | chr7:3916188-3916613 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 234-480 |
| Cow position: | chr7:48761236-48761477 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 115 |
| Conread position: | 234-663 |
| Cow position: | chr7:40909967-40909523 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 234-670 |
| Cow position: | chr7:38470190-38470629 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 243-620 |
| Cow position: | chr7:34618546-34618903 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 257, 92 |
| Conread position: | 243-642 |
| Cow position: | chr7:27466711-27467100 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 263, 94 |
| Conread position: | 245-648 |
| Cow position: | chr7:50589496-50589895 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 282 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 248, 100 |
| Conread position: | 262-663 |
| Cow position: | chr7:63334439-63334868 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 272-648 |
| Cow position: | chr7:25119890-25120250 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 273-570 |
| Cow position: | chr7:66164873-66164575 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 362-613 |
| Cow position: | chr7:19929911-19930154 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 362-668 |
| Cow position: | chr7:11157672-11157967 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 402-648 |
| Cow position: | chr7:12452430-12452663 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 402-688 |
| Cow position: | chr7:12266079-12266364 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 407-636 |
| Cow position: | chr7:47886662-47886431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 413-671 |
| Cow position: | chr7:18107903-18107654 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 414-663 |
| Cow position: | chr7:62014948-62014712 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 414-672 |
| Cow position: | chr7:936854-937105 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 53 |
| Conread position: | 418-562 |
| Cow position: | chr7:28440507-28440650 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 424-671 |
| Cow position: | chr7:3662206-3661962 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 426-672 |
| Cow position: | chr7:49929374-49929620 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 436-670 |
| Cow position: | chr7:16140020-16140254 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 75 |
| Conread position: | 437-670 |
| Cow position: | chr7:11650066-11650298 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 440-656 |
| Cow position: | chr7:13801071-13800857 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 465-670 |
| Cow position: | chr7:43181648-43181450 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 475-674 |
| Cow position: | chr7:7171423-7171617 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 482-671 |
| Cow position: | chr7:33509422-33509242 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 511-671 |
| Cow position: | chr7:23958648-23958488 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.