Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 193-342 |
| Cow position: | chr8:30548943-30549091 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 113, 6 |
| Conread position: | 197-663 |
| Cow position: | chr8:39881023-39880586 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 200-514 |
| Cow position: | chr8:4933258-4933559 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 106, 44 |
| Conread position: | 200-615 |
| Cow position: | chr8:9701767-9701378 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 201-660 |
| Cow position: | chr8:3551895-3552359 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 61 |
| Conread position: | 203-663 |
| Cow position: | chr8:5958990-5959431 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 204-648 |
| Cow position: | chr8:37094152-37094580 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 204-663 |
| Cow position: | chr8:5649887-5650316 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 204-663 |
| Cow position: | chr8:21978326-21977892 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 205-670 |
| Cow position: | chr8:9077182-9076736 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 84 |
| Conread position: | 206-468 |
| Cow position: | chr8:12515347-12515602 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 102, 126 |
| Conread position: | 206-532 |
| Cow position: | chr8:49454429-49454754 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 206-567 |
| Cow position: | chr8:59234312-59234659 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 206-662 |
| Cow position: | chr8:8573450-8573897 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 5 |
| Conread position: | 206-663 |
| Cow position: | chr8:18951362-18950931 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 206-663 |
| Cow position: | chr8:58150167-58150613 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 206-668 |
| Cow position: | chr8:12524555-12525003 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 207-361 |
| Cow position: | chr8:59039610-59039765 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 207-578 |
| Cow position: | chr8:53043860-53044219 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 132 |
| Conread position: | 207-628 |
| Cow position: | chr8:36296015-36296420 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 131 |
| Conread position: | 207-663 |
| Cow position: | chr8:39940005-39940454 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 207-668 |
| Cow position: | chr8:61169106-61168651 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 207-670 |
| Cow position: | chr8:45965901-45966361 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 209-672 |
| Cow position: | chr8:7419395-7418947 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 211-663 |
| Cow position: | chr8:21986674-21986254 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 212-650 |
| Cow position: | chr8:46750951-46751389 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 49 |
| Conread position: | 212-660 |
| Cow position: | chr8:23704256-23704716 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 220-659 |
| Cow position: | chr8:1103275-1102853 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 222-670 |
| Cow position: | chr8:12567472-12567896 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 228-672 |
| Cow position: | chr8:29240359-29240802 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 157 |
| Conread position: | 231-656 |
| Cow position: | chr8:25585301-25584905 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 258-670 |
| Cow position: | chr8:40113990-40113589 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 262-693 |
| Cow position: | chr8:12576526-12576935 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 294-663 |
| Cow position: | chr8:48707401-48707751 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 362-660 |
| Cow position: | chr8:47801947-47802239 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 378-668 |
| Cow position: | chr8:1365774-1365488 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 385-672 |
| Cow position: | chr8:33777264-33777547 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 112 |
| Conread position: | 397-663 |
| Cow position: | chr8:30549388-30549640 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 243, 83 |
| Conread position: | 406-670 |
| Cow position: | chr8:26079804-26079546 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 413-663 |
| Cow position: | chr8:19396446-19396215 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 414-670 |
| Cow position: | chr8:36295280-36295024 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 418-670 |
| Cow position: | chr8:10097554-10097309 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 418-670 |
| Cow position: | chr8:24566366-24566113 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 418-670 |
| Cow position: | chr8:52145843-52145593 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 421-663 |
| Cow position: | chr8:21896674-21896898 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 424-666 |
| Cow position: | chr8:45343885-45344129 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 424-671 |
| Cow position: | chr8:26828986-26828755 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 427-670 |
| Cow position: | chr8:49451095-49451350 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 476-671 |
| Cow position: | chr8:9519058-9519251 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 36 |
Show alignments to all cow chromosomes.