Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 184-663
Cow position: chr9:49420674-49421120 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 27

Conread position: 187-670
Cow position: chr9:22441398-22440940 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 31

Conread position: 189-359
Cow position: chr9:1632485-1632317 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 134

Conread position: 192-521
Cow position: chr9:36602834-36602513 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 114, 147

Conread position: 198-663
Cow position: chr9:6260058-6260534 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 40

Conread position: 199-466
Cow position: chr9:41843064-41843323 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 107, 139

Conread position: 200-669
Cow position: chr9:58569783-58569327 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 68

Conread position: 201-663
Cow position: chr9:25032391-25031942 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 288
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 131, 168

Conread position: 201-680
Cow position: chr9:34047499-34047971 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 17

Conread position: 204-496
Cow position: chr9:17988688-17988968 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 102, 123

Conread position: 204-674
Cow position: chr9:34402876-34402413 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 322
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 102, 178

Conread position: 205-600
Cow position: chr9:30200386-30200002 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 206-459
Cow position: chr9:61128055-61127808 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 140

Conread position: 206-661
Cow position: chr9:5701824-5701381 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 5

Conread position: 206-663
Cow position: chr9:4968705-4968270 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 5

Conread position: 206-670
Cow position: chr9:1383717-1383263 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 207-320
Cow position: chr9:49338990-49339104 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 207-493
Cow position: chr9:54359201-54358923 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 11

Conread position: 207-663
Cow position: chr9:1387513-1387977 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 140

Conread position: 207-668
Cow position: chr9:41026655-41027111 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 142

Conread position: 207-674
Cow position: chr9:1097286-1097743 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 133

Conread position: 208-653
Cow position: chr9:16619404-16618957 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 138

Conread position: 208-672
Cow position: chr9:27385421-27385898 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 140

Conread position: 210-500
Cow position: chr9:34167092-34167390 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 51

Conread position: 210-668
Cow position: chr9:5380706-5381160 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 21

Conread position: 211-396
Cow position: chr9:37289204-37289390 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 48

Conread position: 211-548
Cow position: chr9:44717997-44718319 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 95, 140

Conread position: 211-569
Cow position: chr9:23133783-23133436 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 146, 75

Conread position: 211-608
Cow position: chr9:5479178-5479596 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 32

Conread position: 211-660
Cow position: chr9:7615634-7616072 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 128

Conread position: 211-670
Cow position: chr9:8627631-8627184 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 136

Conread position: 211-670
Cow position: chr9:15992985-15993437 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 125

Conread position: 211-689
Cow position: chr9:42252374-42252843 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 28

Conread position: 211-691
Cow position: chr9:3436351-3435893 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 33

Conread position: 212-602
Cow position: chr9:61574163-61574527 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 94, 115

Conread position: 212-657
Cow position: chr9:25541194-25541643 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 201

Conread position: 213-668
Cow position: chr9:12637921-12638374 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 114

Conread position: 214-615
Cow position: chr9:40441173-40440765 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 280

Conread position: 215-615
Cow position: chr9:8321514-8321108 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 93, 53

Conread position: 221-672
Cow position: chr9:36712446-36712879 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 222-648
Cow position: chr9:63755005-63755409 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 284
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 299, 15

Conread position: 225-533
Cow position: chr9:25436920-25437224 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 102

Conread position: 231-671
Cow position: chr9:44114914-44114483 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 7

Conread position: 232-639
Cow position: chr9:7008634-7009037 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 94

Conread position: 233-663
Cow position: chr9:20605717-20605312 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 287
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 102

Conread position: 234-682
Cow position: chr9:16864029-16863575 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 72

Conread position: 238-682
Cow position: chr9:22726133-22726556 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 59

Conread position: 243-661
Cow position: chr9:8596262-8596661 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 63, 71

Conread position: 362-541
Cow position: chr9:8082972-8083147 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 364-548
Cow position: chr9:48193596-48193777 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 106, 138

Conread position: 374-668
Cow position: chr9:1631255-1630971 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 267, 24

Conread position: 374-669
Cow position: chr9:37289651-37289951 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 424-670
Cow position: chr9:33569608-33569360 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 84

Conread position: 424-671
Cow position: chr9:28536306-28536064 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 438-670
Cow position: chr9:7448273-7448040 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 74

Conread position: 453-659
Cow position: chr9:54462449-54462244 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 47, 60

Show alignments to all cow chromosomes.