Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 189-467 |
| Cow position: | chrX:47943472-47943740 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 197-613 |
| Cow position: | chrX:29145138-29144750 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 109, 10 |
| Conread position: | 200-656 |
| Cow position: | chrX:44117501-44117040 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 187 |
| Conread position: | 201-687 |
| Cow position: | chrX:34827078-34827535 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 201-694 |
| Cow position: | chrX:24394287-24394755 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 105, 76 |
| Conread position: | 204-535 |
| Cow position: | chrX:28042613-28042295 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-663 |
| Cow position: | chrX:26381764-26381326 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 118 |
| Conread position: | 204-663 |
| Cow position: | chrX:28641413-28641871 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 206-668 |
| Cow position: | chrX:32979122-32978663 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 207-353 |
| Cow position: | chrX:25219319-25219173 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 207-468 |
| Cow position: | chrX:39983224-39983480 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 207-663 |
| Cow position: | chrX:42416669-42417116 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 169 |
| Conread position: | 207-672 |
| Cow position: | chrX:25306945-25306496 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 120 |
| Conread position: | 211-359 |
| Cow position: | chrX:47810263-47810413 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 211-474 |
| Cow position: | chrX:28698572-28698316 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 96, 114 |
| Conread position: | 211-660 |
| Cow position: | chrX:30675074-30675505 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 211-663 |
| Cow position: | chrX:31203689-31204139 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 100, 125 |
| Conread position: | 211-663 |
| Cow position: | chrX:42496668-42497100 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 211-667 |
| Cow position: | chrX:36090214-36090681 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 118 |
| Conread position: | 211-668 |
| Cow position: | chrX:45892784-45893232 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 211-674 |
| Cow position: | chrX:38630873-38630442 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 212-361 |
| Cow position: | chrX:47336569-47336418 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 135 |
| Conread position: | 212-397 |
| Cow position: | chrX:37075209-37075022 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 213-659 |
| Cow position: | chrX:45769927-45769479 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 217-663 |
| Cow position: | chrX:5414303-5414731 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 234-672 |
| Cow position: | chrX:19503204-19503625 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 243-617 |
| Cow position: | chrX:15267480-15267118 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 63 |
| Conread position: | 245-663 |
| Cow position: | chrX:48016270-48015841 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 279-660 |
| Cow position: | chrX:48265301-48264916 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 355-666 |
| Cow position: | chrX:47331779-47331470 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 379-663 |
| Cow position: | chrX:47336346-47336065 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 402-672 |
| Cow position: | chrX:37075038-37074778 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 402-672 |
| Cow position: | chrX:39528432-39528695 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 403-564 |
| Cow position: | chrX:6393174-6393019 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 409-672 |
| Cow position: | chrX:831167-830898 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 412-668 |
| Cow position: | chrX:39861018-39861265 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 413-670 |
| Cow position: | chrX:12649094-12649349 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 418-670 |
| Cow position: | chrX:9515144-9514892 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 424-670 |
| Cow position: | chrX:42570665-42570430 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 76 |
| Conread position: | 425-670 |
| Cow position: | chrX:29919852-29919607 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 428-626 |
| Cow position: | chrX:42467445-42467250 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 437-662 |
| Cow position: | chrX:26411679-26411905 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 437-670 |
| Cow position: | chrX:29149753-29149519 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 437-670 |
| Cow position: | chrX:40598592-40598827 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 441-649 |
| Cow position: | chrX:31859272-31859487 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 441-670 |
| Cow position: | chrX:26887739-26887978 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 442-670 |
| Cow position: | chrX:26463659-26463887 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 442-670 |
| Cow position: | chrX:30035994-30035764 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 450-648 |
| Cow position: | chrX:17791210-17791015 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 475-672 |
| Cow position: | chrX:28698271-28698077 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 492-666 |
| Cow position: | chrX:26803033-26803203 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 19 |
Show alignments to all cow chromosomes.