Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Thy1-THY010030C05.5.5
        

               Conread position:
               1-305
               

               Cow position:
               chr6:16316144-16316478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               1-365
               

               Cow position:
               chr6:1371385-1371011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               85, 21
               

               Conread position:
               3-235
               

               Cow position:
               chr6:14850872-14850630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               53, 206
               

               Conread position:
               3-265
               

               Cow position:
               chr6:54140655-54140911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 50
               

               Conread position:
               3-294
               

               Cow position:
               chr6:56843001-56843298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               120, 78
               

               Conread position:
               3-296
               

               Cow position:
               chr6:38218514-38218819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               53, 76
               

               Conread position:
               3-319
               

               Cow position:
               chr6:6343268-6343605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 88
               

               Conread position:
               3-375
               

               Cow position:
               chr6:29484932-29485313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               51, 81
               

               Conread position:
               3-378
               

               Cow position:
               chr6:34475712-34475325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 93
               

               Conread position:
               3-396
               

               Cow position:
               chr6:36202670-36203073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 81
               

               Conread position:
               3-419
               

               Cow position:
               chr6:13687969-13687545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               289
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               59, 40
               

               Conread position:
               4-375
               

               Cow position:
               chr6:28156302-28155943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               5-314
               

               Cow position:
               chr6:59069784-59069451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               242
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               40, 91
               

               Conread position:
               5-360
               

               Cow position:
               chr6:54991158-54990786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               40, 64
               

               Conread position:
               5-371
               

               Cow position:
               chr6:12337828-12338216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 318
               

               Conread position:
               5-371
               

               Cow position:
               chr6:46860324-46859944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               40, 96
               

               Conread position:
               6-268
               

               Cow position:
               chr6:23248118-23247849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               36, 88
               

               Conread position:
               6-378
               

               Cow position:
               chr6:17345214-17345576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               9, 166
               

               Conread position:
               6-381
               

               Cow position:
               chr6:31535726-31535337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               39, 88
               

               Conread position:
               7-352
               

               Cow position:
               chr6:17817139-17816785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               74, 34
               

               Conread position:
               8-378
               

               Cow position:
               chr6:9736793-9736412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               272
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               182, 51
               

               Conread position:
               9-202
               

               Cow position:
               chr6:60456679-60456880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               34, 62
               

               Conread position:
               9-208
               

               Cow position:
               chr6:12629872-12630078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               61, 162
               

               Conread position:
               9-253
               

               Cow position:
               chr6:639667-639916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               113, 43
               

               Conread position:
               9-378
               

               Cow position:
               chr6:6400796-6401198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               280
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               26, 85
               

               Conread position:
               10-192
               

               Cow position:
               chr6:20230977-20230785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               77, 42
               

               Conread position:
               10-197
               

               Cow position:
               chr6:21311909-21311712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 152
               

               Conread position:
               10-250
               

               Cow position:
               chr6:67968765-67968511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               32, 78
               

               Conread position:
               10-268
               

               Cow position:
               chr6:8788188-8787920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 82
               

               Conread position:
               10-309
               

               Cow position:
               chr6:528428-528117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               10-319
               

               Cow position:
               chr6:16764793-16764470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               244
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               119, 42
               

               Conread position:
               10-326
               

               Cow position:
               chr6:31635836-31635512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               101, 42
               

               Conread position:
               10-365
               

               Cow position:
               chr6:35990374-35990020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 47
               

               Conread position:
               10-375
               

               Cow position:
               chr6:58732465-58732070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 157
               

               Conread position:
               10-378
               

               Cow position:
               chr6:54490891-54490513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 37
               

               Conread position:
               10-382
               

               Cow position:
               chr6:37149042-37149419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 46
               

               Conread position:
               10-408
               

               Cow position:
               chr6:8562565-8562980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 84
               

               Conread position:
               11-160
               

               Cow position:
               chr6:24327288-24327135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               11-195
               

               Cow position:
               chr6:24515343-24515154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               11-219
               

               Cow position:
               chr6:9839012-9839240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               11-266
               

               Cow position:
               chr6:35539657-35539394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               48, 204
               

               Conread position:
               11-301
               

               Cow position:
               chr6:12551116-12551416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 83
               

               Conread position:
               11-306
               

               Cow position:
               chr6:65259618-65259330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               158, 40
               

               Conread position:
               11-378
               

               Cow position:
               chr6:9219123-9219496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               275
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               41, 80
               

               Conread position:
               11-398
               

               Cow position:
               chr6:58073898-58074307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               44, 81
               

               Conread position:
               12-115
               

               Cow position:
               chr6:17067969-17067863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               91
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-130
               

               Cow position:
               chr6:7694504-7694378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-135
               

               Cow position:
               chr6:55607955-55607837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-153
               

               Cow position:
               chr6:52705866-52705723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 79
               

               Conread position:
               12-156
               

               Cow position:
               chr6:61575454-61575611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-160
               

               Cow position:
               chr6:39994610-39994456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               12-168
               

               Cow position:
               chr6:33276888-33277057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-170
               

               Cow position:
               chr6:52025803-52025636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-197
               

               Cow position:
               chr6:21812581-21812783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               44, 72
               

               Conread position:
               12-198
               

               Cow position:
               chr6:32335657-32335848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               72, 25
               

               Conread position:
               12-199
               

               Cow position:
               chr6:5462198-5462010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 39
               

               Conread position:
               12-199
               

               Cow position:
               chr6:54293962-54294150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               111, 41
               

               Conread position:
               12-199
               

               Cow position:
               chr6:58076075-58076278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               12-200
               

               Cow position:
               chr6:45160441-45160249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               42, 78
               

               Conread position:
               12-203
               

               Cow position:
               chr6:5958172-5957976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               12-203
               

               Cow position:
               chr6:16737871-16738071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-203
               

               Cow position:
               chr6:49604533-49604728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               86, 29
               

               Conread position:
               12-203
               

               Cow position:
               chr6:50119936-50119730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               12-206
               

               Cow position:
               chr6:54287931-54288126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               113, 26
               

               Conread position:
               12-207
               

               Cow position:
               chr6:47540377-47540587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               23, 84
               

               Conread position:
               12-207
               

               Cow position:
               chr6:53710967-53711171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               12-208
               

               Cow position:
               chr6:53731372-53731581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               12-208
               

               Cow position:
               chr6:61137222-61137432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-211
               

               Cow position:
               chr6:16411046-16411251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               97, 46
               

               Conread position:
               12-218
               

               Cow position:
               chr6:36928502-36928728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 82
               

               Conread position:
               12-218
               

               Cow position:
               chr6:47989036-47989239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               32, 68
               

               Conread position:
               12-218
               

               Cow position:
               chr6:49685436-49685649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               44, 63
               

               Conread position:
               12-218
               

               Cow position:
               chr6:49694226-49694446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               12-218
               

               Cow position:
               chr6:60239541-60239328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               29, 82
               

               Conread position:
               12-219
               

               Cow position:
               chr6:642726-642502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               26, 150
               

               Conread position:
               12-219
               

               Cow position:
               chr6:5445474-5445691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               29, 81
               

               Conread position:
               12-219
               

               Cow position:
               chr6:28148694-28148903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               109, 24
               

               Conread position:
               12-220
               

               Cow position:
               chr6:24652331-24652125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               138, 38
               

               Conread position:
               12-223
               

               Cow position:
               chr6:37603374-37603572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               12-228
               

               Cow position:
               chr6:50445912-50445691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               42, 162
               

               Conread position:
               12-230
               

               Cow position:
               chr6:415945-416187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               12-231
               

               Cow position:
               chr6:21542171-21542403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               12-236
               

               Cow position:
               chr6:44098935-44099171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               184
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               44, 224
               

               Conread position:
               12-238
               

               Cow position:
               chr6:14839179-14838937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               33, 95
               

               Conread position:
               12-241
               

               Cow position:
               chr6:242665-242891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               12-241
               

               Cow position:
               chr6:607113-607353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               12-244
               

               Cow position:
               chr6:24961996-24962238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               24, 76
               

               Conread position:
               12-248
               

               Cow position:
               chr6:62925142-62924899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 43
               

               Conread position:
               12-249
               

               Cow position:
               chr6:59108793-59109043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               12-256
               

               Cow position:
               chr6:52248284-52248025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               36, 82
               

               Conread position:
               12-257
               

               Cow position:
               chr6:561469-561733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               36, 83
               

               Conread position:
               12-258
               

               Cow position:
               chr6:64449240-64449484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               44, 189
               

               Conread position:
               12-260
               

               Cow position:
               chr6:3929170-3929427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               12-260
               

               Cow position:
               chr6:25008565-25008828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               12-260
               

               Cow position:
               chr6:26910018-26909764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               21, 202
               

               Conread position:
               12-264
               

               Cow position:
               chr6:4864689-4864434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               199
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               113, 21
               

               Conread position:
               12-264
               

               Cow position:
               chr6:14696521-14696252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               12-264
               

               Cow position:
               chr6:22503072-22502798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-264
               

               Cow position:
               chr6:38614675-38614925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               44, 31
               

               Conread position:
               12-266
               

               Cow position:
               chr6:54701391-54701656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 82
               

               Conread position:
               12-267
               

               Cow position:
               chr6:130314-130047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               28, 76
               

               Conread position:
               12-267
               

               Cow position:
               chr6:12543082-12542814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 72
               

               Conread position:
               12-267
               

               Cow position:
               chr6:37634640-37634912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               106, 40
               

               Conread position:
               12-267
               

               Cow position:
               chr6:55763705-55763969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 211
               

               Conread position:
               12-267
               

               Cow position:
               chr6:58590125-58590389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 89
               

               Conread position:
               12-267
               

               Cow position:
               chr6:63272763-63272496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               33, 260
               

               Conread position:
               12-268
               

               Cow position:
               chr6:10695718-10695977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               12-268
               

               Cow position:
               chr6:16423550-16423818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               12-268
               

               Cow position:
               chr6:16625798-16626066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               12-268
               

               Cow position:
               chr6:27815618-27815353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               44, 59
               

               Conread position:
               12-268
               

               Cow position:
               chr6:35613563-35613300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               12-268
               

               Cow position:
               chr6:60350448-60350175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               37, 82
               

               Conread position:
               12-269
               

               Cow position:
               chr6:14201549-14201807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               33, 163
               

               Conread position:
               12-269
               

               Cow position:
               chr6:19329903-19329649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               38, 145
               

               Conread position:
               12-269
               

               Cow position:
               chr6:60473986-60474248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               42, 101
               

               Conread position:
               12-269
               

               Cow position:
               chr6:65711678-65711933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               33, 103
               

               Conread position:
               12-284
               

               Cow position:
               chr6:42961516-42961230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               29, 210
               

               Conread position:
               12-289
               

               Cow position:
               chr6:899439-899155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               12-297
               

               Cow position:
               chr6:16706858-16707165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               114, 21
               

               Conread position:
               12-297
               

               Cow position:
               chr6:47339497-47339203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 40
               

               Conread position:
               12-297
               

               Cow position:
               chr6:49002874-49002597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               107, 23
               

               Conread position:
               12-297
               

               Cow position:
               chr6:60442269-60442560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               44, 55
               

               Conread position:
               12-297
               

               Cow position:
               chr6:63047427-63047745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               12-298
               

               Cow position:
               chr6:11169554-11169856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               8, 85
               

               Conread position:
               12-299
               

               Cow position:
               chr6:28977178-28976885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               221
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               142, 41
               

               Conread position:
               12-299
               

               Cow position:
               chr6:52901092-52901393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               113, 8
               

               Conread position:
               12-305
               

               Cow position:
               chr6:42565536-42565848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 73
               

               Conread position:
               12-306
               

               Cow position:
               chr6:60057805-60057496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               12-311
               

               Cow position:
               chr6:21110821-21111113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               275, 50
               

               Conread position:
               12-312
               

               Cow position:
               chr6:14958498-14958177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               12-312
               

               Cow position:
               chr6:21869794-21869480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               110, 77
               

               Conread position:
               12-314
               

               Cow position:
               chr6:30973892-30974207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 83
               

               Conread position:
               12-314
               

               Cow position:
               chr6:37199688-37199365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               249
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 219
               

               Conread position:
               12-317
               

               Cow position:
               chr6:51674769-51675080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 29
               

               Conread position:
               12-318
               

               Cow position:
               chr6:7989565-7989249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               33, 137
               

               Conread position:
               12-319
               

               Cow position:
               chr6:7131020-7130704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               145, 26
               

               Conread position:
               12-320
               

               Cow position:
               chr6:9751189-9750882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 40
               

               Conread position:
               12-320
               

               Cow position:
               chr6:54864816-54864483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               111, 41
               

               Conread position:
               12-321
               

               Cow position:
               chr6:67214592-67214926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 12
               

               Conread position:
               12-324
               

               Cow position:
               chr6:14949630-14949304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               39, 81
               

               Conread position:
               12-325
               

               Cow position:
               chr6:68049286-68049599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 134
               

               Conread position:
               12-326
               

               Cow position:
               chr6:53651892-53652221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               12-331
               

               Cow position:
               chr6:53519772-53519437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 78
               

               Conread position:
               12-332
               

               Cow position:
               chr6:48112055-48112382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               82, 31
               

               Conread position:
               12-341
               

               Cow position:
               chr6:46570969-46571305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               44, 77
               

               Conread position:
               12-343
               

               Cow position:
               chr6:40713651-40713312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 81
               

               Conread position:
               12-347
               

               Cow position:
               chr6:8637126-8637478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               42, 81
               

               Conread position:
               12-348
               

               Cow position:
               chr6:6067826-6067502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 30
               

               Conread position:
               12-348
               

               Cow position:
               chr6:67323167-67323508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 82
               

               Conread position:
               12-351
               

               Cow position:
               chr6:37783269-37783604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 120
               

               Conread position:
               12-353
               

               Cow position:
               chr6:23695848-23696206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               97, 75
               

               Conread position:
               12-355
               

               Cow position:
               chr6:6226873-6227220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               38, 101
               

               Conread position:
               12-356
               

               Cow position:
               chr6:32121762-32122105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 83
               

               Conread position:
               12-357
               

               Cow position:
               chr6:2547091-2547466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 84
               

               Conread position:
               12-359
               

               Cow position:
               chr6:16617049-16617399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               43, 70
               

               Conread position:
               12-359
               

               Cow position:
               chr6:19012920-19013278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 46
               

               Conread position:
               12-360
               

               Cow position:
               chr6:120090-120454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               33, 219
               

               Conread position:
               12-360
               

               Cow position:
               chr6:26915181-26915542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               23, 78
               

               Conread position:
               12-360
               

               Cow position:
               chr6:40774497-40774120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               102, 34
               

               Conread position:
               12-360
               

               Cow position:
               chr6:44194694-44194339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               28, 81
               

               Conread position:
               12-360
               

               Cow position:
               chr6:50984075-50984439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               12-362
               

               Cow position:
               chr6:8125183-8125545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 40
               

               Conread position:
               12-362
               

               Cow position:
               chr6:38641349-38641710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 40
               

               Conread position:
               12-365
               

               Cow position:
               chr6:48187730-48187355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               36, 25
               

               Conread position:
               12-365
               

               Cow position:
               chr6:52412705-52413081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               33, 207
               

               Conread position:
               12-365
               

               Cow position:
               chr6:60850539-60850161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               12-366
               

               Cow position:
               chr6:19695657-19696029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 34
               

               Conread position:
               12-366
               

               Cow position:
               chr6:37467688-37467317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               41, 98
               

               Conread position:
               12-366
               

               Cow position:
               chr6:46465679-46466038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               90, 31
               

               Conread position:
               12-366
               

               Cow position:
               chr6:48281846-48282215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 119
               

               Conread position:
               12-366
               

               Cow position:
               chr6:60739866-60740230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               12-367
               

               Cow position:
               chr6:35842508-35842882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 17
               

               Conread position:
               12-369
               

               Cow position:
               chr6:4692133-4691742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 84
               

               Conread position:
               12-370
               

               Cow position:
               chr6:47305190-47305567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 79
               

               Conread position:
               12-371
               

               Cow position:
               chr6:5114196-5113821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               12-371
               

               Cow position:
               chr6:8965940-8966314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 196
               

               Conread position:
               12-371
               

               Cow position:
               chr6:21587570-21587208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               12-372
               

               Cow position:
               chr6:323458-323075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 86
               

               Conread position:
               12-372
               

               Cow position:
               chr6:1703665-1704021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 84
               

               Conread position:
               12-372
               

               Cow position:
               chr6:7103385-7103012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               32, 156
               

               Conread position:
               12-372
               

               Cow position:
               chr6:7539425-7539800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 63
               

               Conread position:
               12-372
               

               Cow position:
               chr6:10106145-10105756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               277
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 64
               

               Conread position:
               12-372
               

               Cow position:
               chr6:15938002-15937625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               12-372
               

               Cow position:
               chr6:21534910-21535267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               12-372
               

               Cow position:
               chr6:23532514-23532873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               24, 57
               

               Conread position:
               12-372
               

               Cow position:
               chr6:34196297-34195935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 24
               

               Conread position:
               12-372
               

               Cow position:
               chr6:47574756-47575118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               12-372
               

               Cow position:
               chr6:52478576-52478184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               29, 314
               

               Conread position:
               12-372
               

               Cow position:
               chr6:54132669-54133038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               265
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               43, 18
               

               Conread position:
               12-372
               

               Cow position:
               chr6:54430670-54431063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               12-372
               

               Cow position:
               chr6:59015710-59015352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               43, 51
               

               Conread position:
               12-372
               

               Cow position:
               chr6:67950810-67951184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               12-373
               

               Cow position:
               chr6:41733478-41733863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               42, 136
               

               Conread position:
               12-373
               

               Cow position:
               chr6:51835251-51835626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               12-374
               

               Cow position:
               chr6:12092133-12091757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               12-375
               

               Cow position:
               chr6:15243102-15243491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               14, 84
               

               Conread position:
               12-375
               

               Cow position:
               chr6:36652270-36652629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               44, 70
               

               Conread position:
               12-375
               

               Cow position:
               chr6:38771145-38771501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 34
               

               Conread position:
               12-375
               

               Cow position:
               chr6:39093595-39093975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               107, 37
               

               Conread position:
               12-375
               

               Cow position:
               chr6:51581406-51581025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 76
               

               Conread position:
               12-376
               

               Cow position:
               chr6:5095699-5095311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 41
               

               Conread position:
               12-376
               

               Cow position:
               chr6:66433799-66434185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 40
               

               Conread position:
               12-378
               

               Cow position:
               chr6:611412-611776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 81
               

               Conread position:
               12-378
               

               Cow position:
               chr6:1770348-1769961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               270
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 83
               

               Conread position:
               12-378
               

               Cow position:
               chr6:3595645-3596027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               74, 43
               

               Conread position:
               12-378
               

               Cow position:
               chr6:7128549-7128171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               44, 96
               

               Conread position:
               12-378
               

               Cow position:
               chr6:10332245-10331865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               33, 63
               

               Conread position:
               12-378
               

               Cow position:
               chr6:10612717-10613063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               141, 27
               

               Conread position:
               12-378
               

               Cow position:
               chr6:11246615-11247001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               12-378
               

               Cow position:
               chr6:12500711-12501062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               33, 73
               

               Conread position:
               12-378
               

               Cow position:
               chr6:15300966-15300607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               12-378
               

               Cow position:
               chr6:18447658-18447282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 146
               

               Conread position:
               12-378
               

               Cow position:
               chr6:18988067-18988424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 68
               

               Conread position:
               12-378
               

               Cow position:
               chr6:19401713-19402078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               12-378
               

               Cow position:
               chr6:24468546-24468166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 166
               

               Conread position:
               12-378
               

               Cow position:
               chr6:31847369-31847011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               12-378
               

               Cow position:
               chr6:32867355-32866988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               43, 85
               

               Conread position:
               12-378
               

               Cow position:
               chr6:33302263-33302629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 41
               

               Conread position:
               12-378
               

               Cow position:
               chr6:37246579-37246206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 131
               

               Conread position:
               12-378
               

               Cow position:
               chr6:38441033-38441413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 62
               

               Conread position:
               12-378
               

               Cow position:
               chr6:45690742-45690386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               261
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               17, 84
               

               Conread position:
               12-378
               

               Cow position:
               chr6:46865742-46865352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               42, 366
               

               Conread position:
               12-378
               

               Cow position:
               chr6:47355675-47356059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 80
               

               Conread position:
               12-378
               

               Cow position:
               chr6:48567491-48567127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               56, 169
               

               Conread position:
               12-378
               

               Cow position:
               chr6:50090492-50090878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               37, 83
               

               Conread position:
               12-378
               

               Cow position:
               chr6:53139078-53138705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               37, 155
               

               Conread position:
               12-378
               

               Cow position:
               chr6:56376499-56376138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               12-378
               

               Cow position:
               chr6:60859455-60859065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 163
               

               Conread position:
               12-378
               

               Cow position:
               chr6:61515347-61514965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 197
               

               Conread position:
               12-378
               

               Cow position:
               chr6:61631762-61631375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 83
               

               Conread position:
               12-378
               

               Cow position:
               chr6:62324842-62325225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               42, 203
               

               Conread position:
               12-380
               

               Cow position:
               chr6:19292663-19293034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 25
               

               Conread position:
               12-380
               

               Cow position:
               chr6:47026332-47026694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               251
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               43, 80
               

               Conread position:
               12-380
               

               Cow position:
               chr6:65676108-65676479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 103
               

               Conread position:
               12-380
               

               Cow position:
               chr6:65870875-65871266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               32, 263
               

               Conread position:
               12-381
               

               Cow position:
               chr6:6098431-6098013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               306
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               12-381
               

               Cow position:
               chr6:10400044-10399672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 42
               

               Conread position:
               12-381
               

               Cow position:
               chr6:20157176-20157571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               33, 71
               

               Conread position:
               12-381
               

               Cow position:
               chr6:39358490-39358107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               42, 74
               

               Conread position:
               12-381
               

               Cow position:
               chr6:49421928-49421560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               49, 26
               

               Conread position:
               12-382
               

               Cow position:
               chr6:57405274-57404899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               12-383
               

               Cow position:
               chr6:36470712-36470340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 33
               

               Conread position:
               12-384
               

               Cow position:
               chr6:66131159-66131559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               291
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               12-386
               

               Cow position:
               chr6:49398765-49398387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               21, 80
               

               Conread position:
               12-389
               

               Cow position:
               chr6:24004398-24004763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 40
               

               Conread position:
               12-389
               

               Cow position:
               chr6:38207645-38207241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 84
               

               Conread position:
               12-390
               

               Cow position:
               chr6:18080661-18080268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               12-390
               

               Cow position:
               chr6:19446111-19446498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               12-390
               

               Cow position:
               chr6:21231387-21231760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 31
               

               Conread position:
               12-390
               

               Cow position:
               chr6:24031226-24031608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               33, 83
               

               Conread position:
               12-390
               

               Cow position:
               chr6:53460721-53460325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 72
               

               Conread position:
               12-390
               

               Cow position:
               chr6:63252072-63251675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 85
               

               Conread position:
               12-392
               

               Cow position:
               chr6:28148102-28148511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 62
               

               Conread position:
               12-397
               

               Cow position:
               chr6:17997464-17997067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 79
               

               Conread position:
               12-397
               

               Cow position:
               chr6:35435855-35436240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 44
               

               Conread position:
               12-398
               

               Cow position:
               chr6:26450168-26450550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               12-398
               

               Cow position:
               chr6:29210352-29210729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               15, 47
               

               Conread position:
               12-399
               

               Cow position:
               chr6:19264649-19264247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               277
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               23, 84
               

               Conread position:
               12-399
               

               Cow position:
               chr6:67574258-67574644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               282
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               39, 77
               

               Conread position:
               12-400
               

               Cow position:
               chr6:26728676-26728288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               12-402
               

               Cow position:
               chr6:6060706-6060319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 53
               

               Conread position:
               12-403
               

               Cow position:
               chr6:6264496-6264912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               295
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               12-403
               

               Cow position:
               chr6:7190268-7189875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 61
               

               Conread position:
               12-403
               

               Cow position:
               chr6:24781713-24781289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 228
               

               Conread position:
               12-404
               

               Cow position:
               chr6:13040304-13040712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               12-406
               

               Cow position:
               chr6:6201292-6201696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 105
               

               Conread position:
               12-406
               

               Cow position:
               chr6:35181402-35180992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 39
               

               Conread position:
               12-406
               

               Cow position:
               chr6:53932997-53932581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 80
               

               Conread position:
               12-408
               

               Cow position:
               chr6:57546365-57545963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               21, 86
               

               Conread position:
               12-408
               

               Cow position:
               chr6:64431790-64432196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 80
               

               Conread position:
               12-409
               

               Cow position:
               chr6:46557907-46558319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               12-410
               

               Cow position:
               chr6:55475097-55475501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               42, 279
               

               Conread position:
               12-416
               

               Cow position:
               chr6:56849869-56850286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               293
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               44, 23
               

               Conread position:
               12-417
               

               Cow position:
               chr6:9008760-9008354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 155
               

               Conread position:
               12-420
               

               Cow position:
               chr6:17414600-17414175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               42, 12
               

               Conread position:
               13-216
               

               Cow position:
               chr6:53345648-53345855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               43, 81
               

               Conread position:
               13-264
               

               Cow position:
               chr6:61608359-61608625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               13-270
               

               Cow position:
               chr6:54369048-54368785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               13-313
               

               Cow position:
               chr6:63299174-63298868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               106, 36
               

               Conread position:
               13-319
               

               Cow position:
               chr6:35993429-35993759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               13-319
               

               Cow position:
               chr6:54867362-54867691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 81
               

               Conread position:
               13-319
               

               Cow position:
               chr6:65904416-65904109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               41, 71
               

               Conread position:
               13-320
               

               Cow position:
               chr6:25407540-25407215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               13-333
               

               Cow position:
               chr6:47640585-47640254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               13-372
               

               Cow position:
               chr6:14914387-14914007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 22
               

               Conread position:
               13-378
               

               Cow position:
               chr6:53024942-53024578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 76
               

               Conread position:
               13-378
               

               Cow position:
               chr6:54036283-54035907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               258
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               43, 77
               

               Conread position:
               13-389
               

               Cow position:
               chr6:65903765-65903382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 78
               

               Conread position:
               13-404
               

               Cow position:
               chr6:17313582-17313998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               13-412
               

               Cow position:
               chr6:46283146-46282731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               290
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               42, 75
               

               Conread position:
               14-160
               

               Cow position:
               chr6:32987145-32986992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               37, 76
               

               Conread position:
               14-197
               

               Cow position:
               chr6:18968922-18968734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               40, 24
               

               Conread position:
               14-203
               

               Cow position:
               chr6:62479313-62479108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               31, 71
               

               Conread position:
               14-217
               

               Cow position:
               chr6:57298873-57299081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               40, 24
               

               Conread position:
               14-218
               

               Cow position:
               chr6:34075872-34076096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               14-240
               

               Cow position:
               chr6:44984179-44984421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               14-264
               

               Cow position:
               chr6:20098111-20097846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 76
               

               Conread position:
               14-269
               

               Cow position:
               chr6:457039-457293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               42, 91
               

               Conread position:
               14-278
               

               Cow position:
               chr6:24545470-24545740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               91, 75
               

               Conread position:
               14-340
               

               Cow position:
               chr6:57571326-57571672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               14-354
               

               Cow position:
               chr6:27888201-27888555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 299
               

               Conread position:
               14-359
               

               Cow position:
               chr6:445164-445541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               14-368
               

               Cow position:
               chr6:27851852-27851486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               255
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               102, 77
               

               Conread position:
               14-372
               

               Cow position:
               chr6:15447355-15446966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 82
               

               Conread position:
               14-375
               

               Cow position:
               chr6:5609587-5609212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               40, 76
               

               Conread position:
               14-375
               

               Cow position:
               chr6:44078374-44078745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 206
               

               Conread position:
               14-378
               

               Cow position:
               chr6:8804675-8804310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               40, 74
               

               Conread position:
               14-378
               

               Cow position:
               chr6:10176450-10176066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 168
               

               Conread position:
               14-378
               

               Cow position:
               chr6:65264682-65264318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 30
               

               Conread position:
               14-381
               

               Cow position:
               chr6:15242685-15243075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 85
               

               Conread position:
               14-382
               

               Cow position:
               chr6:16103349-16102954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               279
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               22, 223
               

               Conread position:
               14-405
               

               Cow position:
               chr6:3952375-3952785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 66
               

               Conread position:
               14-406
               

               Cow position:
               chr6:59104461-59104867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               291
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               14-411
               

               Cow position:
               chr6:16700112-16700530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 166
               

               Conread position:
               15-197
               

               Cow position:
               chr6:29266059-29266250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               15-211
               

               Cow position:
               chr6:40834619-40834408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               30, 80
               

               Conread position:
               15-257
               

               Cow position:
               chr6:31260841-31261100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 164
               

               Conread position:
               15-268
               

               Cow position:
               chr6:28318263-28318514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               86, 30
               

               Conread position:
               15-378
               

               Cow position:
               chr6:34251433-34251065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               260
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               72, 31
               

               Conread position:
               16-191
               

               Cow position:
               chr6:602948-603136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               39, 66
               

               Conread position:
               16-196
               

               Cow position:
               chr6:19351299-19351111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               40, 74
               

               Conread position:
               16-203
               

               Cow position:
               chr6:67304656-67304857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               16-234
               

               Cow position:
               chr6:3118342-3118110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               23, 78
               

               Conread position:
               16-270
               

               Cow position:
               chr6:51387617-51387868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               149, 59
               

               Conread position:
               16-294
               

               Cow position:
               chr6:57164282-57164575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               16-297
               

               Cow position:
               chr6:19681672-19681372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 67
               

               Conread position:
               16-310
               

               Cow position:
               chr6:582412-582106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 37
               

               Conread position:
               16-364
               

               Cow position:
               chr6:46292483-46292137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               251
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 19
               

               Conread position:
               16-372
               

               Cow position:
               chr6:17090450-17090808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               16-378
               

               Cow position:
               chr6:60819370-60819748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               16-390
               

               Cow position:
               chr6:19755222-19754834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               39, 146
               

               Conread position:
               16-397
               

               Cow position:
               chr6:36196069-36196454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               40, 68
               

               Conread position:
               16-417
               

               Cow position:
               chr6:2582729-2583133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 145
               

               Conread position:
               17-270
               

               Cow position:
               chr6:35415666-35415397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               39, 257
               

               Conread position:
               17-310
               

               Cow position:
               chr6:16191522-16191838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               28, 8
               

               Conread position:
               17-346
               

               Cow position:
               chr6:17334201-17333850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-370
               

               Cow position:
               chr6:54365472-54365104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 71
               

               Conread position:
               17-378
               

               Cow position:
               chr6:40032045-40032412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 77
               

               Conread position:
               18-253
               

               Cow position:
               chr6:48169802-48170040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               18-254
               

               Cow position:
               chr6:24934773-24934523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               41, 77
               

               Conread position:
               18-264
               

               Cow position:
               chr6:51893648-51893387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               35, 80
               

               Conread position:
               18-269
               

               Cow position:
               chr6:32518016-32517762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               67, 28
               

               Conread position:
               18-372
               

               Cow position:
               chr6:13367150-13367509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 70
               

               Conread position:
               18-378
               

               Cow position:
               chr6:2607470-2607841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               260
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               27, 74
               

               Conread position:
               18-378
               

               Cow position:
               chr6:12668964-12669331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 36
               

               Conread position:
               18-378
               

               Cow position:
               chr6:19996477-19996848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 64
               

               Conread position:
               18-378
               

               Cow position:
               chr6:24902285-24901922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 136
               

               Conread position:
               18-378
               

               Cow position:
               chr6:59620526-59620889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               36, 140
               

               Conread position:
               19-141
               

               Cow position:
               chr6:50509536-50509663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               37, 74
               

               Conread position:
               19-198
               

               Cow position:
               chr6:48344190-48344380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               7, 14
               

               Conread position:
               19-419
               

               Cow position:
               chr6:38609826-38610253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               20-362
               

               Cow position:
               chr6:16746195-16746562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               20-372
               

               Cow position:
               chr6:47833259-47832888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               25, 112
               

               Conread position:
               20-378
               

               Cow position:
               chr6:4468614-4468999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 190
               

               Conread position:
               20-378
               

               Cow position:
               chr6:58304308-58304645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               245, 29
               

               Conread position:
               20-378
               

               Cow position:
               chr6:67187544-67187911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               20-379
               

               Cow position:
               chr6:45596679-45596312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               20-409
               

               Cow position:
               chr6:31564474-31564093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               106, 35
               

               Conread position:
               22-372
               

               Cow position:
               chr6:18049169-18048795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               22-378
               

               Cow position:
               chr6:32125933-32126285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 10
               

               Conread position:
               23-372
               

               Cow position:
               chr6:43135082-43134714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 292
               

               Conread position:
               23-410
               

               Cow position:
               chr6:55209418-55209829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               284
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               19, 137
               

               Conread position:
               24-208
               

               Cow position:
               chr6:25773518-25773328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               24-375
               

               Cow position:
               chr6:55282427-55282062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               17, 50
               

               Conread position:
               24-378
               

               Cow position:
               chr6:48988300-48988667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               261
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               32, 144
               

               Conread position:
               25-264
               

               Cow position:
               chr6:54936442-54936692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               25-312
               

               Cow position:
               chr6:21234909-21235212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               31, 5
               

               Conread position:
               25-363
               

               Cow position:
               chr6:67618090-67617730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               31, 8
               

               Conread position:
               25-365
               

               Cow position:
               chr6:22332528-22332176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               25-366
               

               Cow position:
               chr6:29000057-28999737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               205, 5
               

               Conread position:
               25-368
               

               Cow position:
               chr6:45388195-45388543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               31, 5
               

               Conread position:
               25-390
               

               Cow position:
               chr6:21737019-21736651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               41, 8
               

               Conread position:
               25-390
               

               Cow position:
               chr6:60118010-60118388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 134
               

               Conread position:
               25-402
               

               Cow position:
               chr6:38640096-38640489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               26-206
               

               Cow position:
               chr6:21052641-21052452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               26-318
               

               Cow position:
               chr6:47799159-47799468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               228
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               29, 13
               

               Conread position:
               26-372
               

               Cow position:
               chr6:21399892-21399527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               19, 118
               

               Conread position:
               26-378
               

               Cow position:
               chr6:53673728-53674075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               28-383
               

               Cow position:
               chr6:63720062-63720428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               28, 62
               

               Conread position:
               29-372
               

               Cow position:
               chr6:62669742-62670098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 56
               

               Conread position:
               30-241
               

               Cow position:
               chr6:12829353-12829135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               25, 39
               

               Conread position:
               30-375
               

               Cow position:
               chr6:53841630-53841273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 138
               

               Conread position:
               30-375
               

               Cow position:
               chr6:67456582-67456969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               26, 149
               

               Conread position:
               30-377
               

               Cow position:
               chr6:78039-77705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               25, 59
               

               Conread position:
               30-383
               

               Cow position:
               chr6:20255519-20255187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               238
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               25, 62
               

               Conread position:
               30-409
               

               Cow position:
               chr6:28084142-28083767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               25, 63
               

               Conread position:
               30-410
               

               Cow position:
               chr6:21004537-21004944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 391
               

               Conread position:
               31-260
               

               Cow position:
               chr6:20206146-20206384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               31-305
               

               Cow position:
               chr6:60667291-60667571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 135
               

               Conread position:
               31-390
               

               Cow position:
               chr6:48803767-48803395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               277
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               25, 62
               

               Conread position:
               33-378
               

               Cow position:
               chr6:28477050-28477382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 59
               

               Conread position:
               33-382
               

               Cow position:
               chr6:21062020-21061654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               272
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               22, 197
               

               Conread position:
               34-268
               

               Cow position:
               chr6:377006-377242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               94, 24
               

               Conread position:
               34-268
               

               Cow position:
               chr6:66874224-66874468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               18, 39
               

               Conread position:
               34-378
               

               Cow position:
               chr6:45065141-45064802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               22, 245
               

               Conread position:
               34-406
               

               Cow position:
               chr6:10225766-10225388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               22, 58
               

               Conread position:
               34-420
               

               Cow position:
               chr6:25615227-25614818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               20, 30
               

               Conread position:
               35-218
               

               Cow position:
               chr6:38233834-38234026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               21, 53
               

               Conread position:
               35-270
               

               Cow position:
               chr6:31814863-31814630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               21, 125
               

               Conread position:
               35-378
               

               Cow position:
               chr6:16266597-16266962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               51, 18
               

               Conread position:
               35-405
               

               Cow position:
               chr6:23402115-23401737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 205
               

               Conread position:
               37-349
               

               Cow position:
               chr6:36189573-36189903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               239
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               19, 55
               

               Conread position:
               38-269
               

               Cow position:
               chr6:54600232-54600466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               11, 52
               

               Conread position:
               38-378
               

               Cow position:
               chr6:50467012-50467371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               39-196
               

               Cow position:
               chr6:358010-357841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               39-318
               

               Cow position:
               chr6:66531940-66531647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               84, 35
               

               Conread position:
               39-350
               

               Cow position:
               chr6:21590571-21590907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               17, 42
               

               Conread position:
               39-366
               

               Cow position:
               chr6:33206630-33206949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               100, 17
               

               Conread position:
               39-378
               

               Cow position:
               chr6:5302530-5302169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               39-407
               

               Cow position:
               chr6:44566296-44566688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               15, 50
               

               Conread position:
               39-412
               

               Cow position:
               chr6:35725973-35726354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               17, 55
               

               Conread position:
               40-372
               

               Cow position:
               chr6:16261665-16262008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               46, 119
               

               Conread position:
               42-376
               

               Cow position:
               chr6:51526374-51526722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               43-227
               

               Cow position:
               chr6:46998262-46998063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               43-378
               

               Cow position:
               chr6:62437301-62437650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               57, 6
               

               Conread position:
               43-389
               

               Cow position:
               chr6:32268994-32268643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               22, 112
               

               Conread position:
               43-403
               

               Cow position:
               chr6:29239823-29240190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               10, 49
               

               Conread position:
               44-268
               

               Cow position:
               chr6:12845262-12845492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               12, 131
               

               Conread position:
               44-408
               

               Cow position:
               chr6:54854132-54854510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               50-381
               

               Cow position:
               chr6:26043644-26043971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               83, 39
               

               Conread position:
               52-378
               

               Cow position:
               chr6:36645282-36645607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               106, 91
               

               Conread position:
               53-298
               

               Cow position:
               chr6:54573138-54573413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               64, 35
               

               Conread position:
               53-306
               

               Cow position:
               chr6:5413714-5413973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               12, 234
               

               Conread position:
               53-309
               

               Cow position:
               chr6:35103440-35103164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               53-314
               

               Cow position:
               chr6:51968964-51969241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               73, 15
               

               Conread position:
               53-349
               

               Cow position:
               chr6:21514724-21514403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               28, 304
               

               Conread position:
               53-357
               

               Cow position:
               chr6:61168670-61168976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               217, 34
               

               Conread position:
               53-372
               

               Cow position:
               chr6:10039616-10039953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               53-372
               

               Cow position:
               chr6:17557276-17557602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               54, 37
               

               Conread position:
               53-372
               

               Cow position:
               chr6:59603312-59602988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               54, 34
               

               Conread position:
               53-378
               

               Cow position:
               chr6:62371286-62370954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               53-382
               

               Cow position:
               chr6:59718691-59719048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 34
               

               Conread position:
               53-390
               

               Cow position:
               chr6:46173363-46173011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               54-264
               

               Cow position:
               chr6:54208243-54208022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               32, 22
               

               Conread position:
               54-312
               

               Cow position:
               chr6:58597608-58597337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               80, 33
               

               Conread position:
               54-368
               

               Cow position:
               chr6:7119714-7119408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 33
               

               Conread position:
               54-372
               

               Cow position:
               chr6:22850349-22850025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               217, 34
               

               Conread position:
               54-378
               

               Cow position:
               chr6:43345550-43345207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               55-378
               

               Cow position:
               chr6:17704716-17705067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               55-378
               

               Cow position:
               chr6:60274109-60273778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               55-381
               

               Cow position:
               chr6:17549084-17548732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               66, 32
               

               Conread position:
               55-382
               

               Cow position:
               chr6:58370650-58370984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               255
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               56-366
               

               Cow position:
               chr6:1429537-1429854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               71, 32
               

               Conread position:
               56-390
               

               Cow position:
               chr6:20196395-20196081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               44, 83
               

               Conread position:
               57-328
               

               Cow position:
               chr6:3592300-3592581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               57-367
               

               Cow position:
               chr6:9719025-9718696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               30, 164
               

               Conread position:
               58-409
               

               Cow position:
               chr6:6063391-6063031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               71, 30
               

               Conread position:
               59-379
               

               Cow position:
               chr6:17794855-17794521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 29
               

               Conread position:
               60-366
               

               Cow position:
               chr6:62929398-62929718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               64-398
               

               Cow position:
               chr6:44867635-44867294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               65-297
               

               Cow position:
               chr6:58608538-58608291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               16, 97
               

               Conread position:
               67-307
               

               Cow position:
               chr6:10487496-10487748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               56, 22
               

               Conread position:
               67-378
               

               Cow position:
               chr6:19045533-19045861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 108
               

               Conread position:
               68-268
               

               Cow position:
               chr6:60673479-60673682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               68-365
               

               Cow position:
               chr6:27240098-27239785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               65, 257
               

               Conread position:
               70-224
               

               Cow position:
               chr6:6673014-6673175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               70-398
               

               Cow position:
               chr6:24110196-24110538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 61
               

               Conread position:
               75-319
               

               Cow position:
               chr6:36284162-36284417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               75-381
               

               Cow position:
               chr6:16288137-16287831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 89
               

               Conread position:
               76-347
               

               Cow position:
               chr6:67281812-67282092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 115
               

               Conread position:
               77-372
               

               Cow position:
               chr6:22525250-22525552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               79-318
               

               Cow position:
               chr6:48468935-48469163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               79, 11
               

               Conread position:
               79-361
               

               Cow position:
               chr6:46274209-46273916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 155
               

               Conread position:
               80-347
               

               Cow position:
               chr6:2153671-2153395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               202
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               74, 17
               

               Conread position:
               80-348
               

               Cow position:
               chr6:59301862-59301581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               80-378
               

               Cow position:
               chr6:18139556-18139262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               186, 77
               

               Conread position:
               80-398
               

               Cow position:
               chr6:5330335-5330667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               81-366
               

               Cow position:
               chr6:33509711-33510009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               223
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               40, 154
               

               Conread position:
               81-376
               

               Cow position:
               chr6:28559452-28559771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               82-248
               

               Cow position:
               chr6:54365081-54364895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               82-348
               

               Cow position:
               chr6:2623704-2623969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 108
               

               Conread position:
               82-382
               

               Cow position:
               chr6:37462944-37463242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               228
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               43, 199
               

               Conread position:
               82-425
               

               Cow position:
               chr6:13565006-13565361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 150
               

               Conread position:
               83-279
               

               Cow position:
               chr6:33929626-33929419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               46, 7
               

               Conread position:
               83-366
               

               Cow position:
               chr6:143446-143158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               83-383
               

               Cow position:
               chr6:41375693-41376008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               231
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               36, 158
               

               Conread position:
               83-390
               

               Cow position:
               chr6:22985935-22985617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               26, 107
               

               Conread position:
               84-366
               

               Cow position:
               chr6:694223-693925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 181
               

               Conread position:
               84-371
               

               Cow position:
               chr6:37395483-37395177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               86-219
               

               Cow position:
               chr6:30688686-30688547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               86-398
               

               Cow position:
               chr6:66590014-66590326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 6
               

               Conread position:
               87-378
               

               Cow position:
               chr6:55546250-55545939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               88-366
               

               Cow position:
               chr6:2078885-2078596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               77, 26
               

               Conread position:
               90-329
               

               Cow position:
               chr6:55535813-55535565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               66, 136
               

               Conread position:
               91-268
               

               Cow position:
               chr6:65846188-65846014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               64, 8
               

               Conread position:
               92-269
               

               Cow position:
               chr6:28973097-28972918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               92-318
               

               Cow position:
               chr6:61142628-61142396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               14, 187
               

               Conread position:
               92-399
               

               Cow position:
               chr6:14166768-14166438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               39, 71
               

               Conread position:
               93-378
               

               Cow position:
               chr6:12964792-12965087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               71, 33
               

               Conread position:
               94-382
               

               Cow position:
               chr6:2584883-2585177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               95-275
               

               Cow position:
               chr6:47306197-47306022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               175, 65
               

               Conread position:
               95-360
               

               Cow position:
               chr6:67451431-67451154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               59, 30
               

               Conread position:
               95-376
               

               Cow position:
               chr6:51539142-51538841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               75, 208
               

               Conread position:
               96-369
               

               Cow position:
               chr6:7801452-7801173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               68, 115
               

               Conread position:
               99-362
               

               Cow position:
               chr6:31806990-31806709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               99-378
               

               Cow position:
               chr6:40050013-40050308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 285
               

               Conread position:
               101-408
               

               Cow position:
               chr6:16352401-16352102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               11, 85
               

               Conread position:
               104-378
               

               Cow position:
               chr6:61884211-61883940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               106-383
               

               Cow position:
               chr6:36454640-36454376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               5, 63
               

               Conread position:
               106-392
               

               Cow position:
               chr6:47885069-47884798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               52, 16
               

               Conread position:
               107-414
               

               Cow position:
               chr6:3350971-3351295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               5, 216
               

               Conread position:
               110-299
               

               Cow position:
               chr6:66375374-66375183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               110-372
               

               Cow position:
               chr6:56986689-56986421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 109
               
UCSC Genome Browser
               Conread position:
               110-378
               

               Cow position:
               chr6:17068693-17068422 (view  custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 195
               
UCSC Genome Browser
               
               
               
Conread position: 111-268

               
               
               
Cow position: chr6:68652396-68652234 (view  custom track)

               
               
               
Alignm length: 163

               
               
               
Alignm identity: 127

               
               
               
Alignm E-value: 6e-30

               
               
               
Alignm gaps (pig, cow): 47, 0
UCSC Genome Browser
               
               
               
Conread position: 111-270

               
               
               
Cow position: chr6:17527631-17527470 (view  custom track)

               
               
               
Alignm length: 164

               
               
               
Alignm identity: 125

               
               
               
Alignm E-value: 1e-26

               
               
               
Alignm gaps (pig, cow): 46, 53

               
               
               Conread position:111-328
               
               
               Cow position:chr6:35896383-35896165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:111-347
               
               
               Cow position:chr6:16640715-16640958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:111-367
               
               
               Cow position:chr6:60468194-60468457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 163

               
               
               Conread position:111-371
               
               
               Cow position:chr6:22215511-22215236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:111-372
               
               
               Cow position:chr6:18118095-18117824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 122

               
               
               Conread position:111-378
               
               
               Cow position:chr6:94233-93966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):157, 48

               
               
               Conread position:111-378
               
               
               Cow position:chr6:6724460-6724742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:111-378
               
               
               Cow position:chr6:23025156-23024865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 253

               
               
               Conread position:111-378
               
               
               Cow position:chr6:53145726-53145447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:111-378
               
               
               Cow position:chr6:55417570-55417300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):57, 199

               
               
               Conread position:111-378
               
               
               Cow position:chr6:60144242-60143966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 201

               
               
               Conread position:111-381
               
               
               Cow position:chr6:23353510-23353792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:111-382
               
               
               Cow position:chr6:5845215-5844931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:111-398
               
               
               Cow position:chr6:51530229-51529932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:111-411
               
               
               Cow position:chr6:13510131-13510443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:113-398
               
               
               Cow position:chr6:18955106-18954834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:115-378
               
               
               Cow position:chr6:50269712-50269449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):156, 38

               
               
               Conread position:115-406
               
               
               Cow position:chr6:44623568-44623851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 156

               
               
               Conread position:117-373
               
               
               Cow position:chr6:10189741-10189990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:126-316
               
               
               Cow position:chr6:56715791-56715993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:126-365
               
               
               Cow position:chr6:3329959-3330215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:126-366
               
               
               Cow position:chr6:57287688-57287451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:126-380
               
               
               Cow position:chr6:8094319-8094051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:126-381
               
               
               Cow position:chr6:41656072-41655819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:126-392
               
               
               Cow position:chr6:23298295-23298536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:126-394
               
               
               Cow position:chr6:36921003-36920726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:127-348
               
               
               Cow position:chr6:18144164-18144412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:128-260
               
               
               Cow position:chr6:1929268-1929396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:128-267
               
               
               Cow position:chr6:42505807-42505948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:128-318
               
               
               Cow position:chr6:51086044-51086239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:128-319
               
               
               Cow position:chr6:19131403-19131606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:128-366
               
               
               Cow position:chr6:18608841-18608590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:128-370
               
               
               Cow position:chr6:63065798-63066062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:128-378
               
               
               Cow position:chr6:41015003-41014741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:128-389
               
               
               Cow position:chr6:23453632-23453887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:129-353
               
               
               Cow position:chr6:8731387-8731631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:129-406
               
               
               Cow position:chr6:62056587-62056872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 184

               
               
               Conread position:130-409
               
               
               Cow position:chr6:47540871-47540576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:130-449
               
               
               Cow position:chr6:57089172-57089509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:131-376
               
               
               Cow position:chr6:62683343-62683606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 217

               
               
               Conread position:131-399
               
               
               Cow position:chr6:33450992-33450723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:131-402
               
               
               Cow position:chr6:47958789-47959062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:132-328
               
               
               Cow position:chr6:17527384-17527189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:132-343
               
               
               Cow position:chr6:55502743-55502970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:132-381
               
               
               Cow position:chr6:53546013-53546265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:133-267
               
               
               Cow position:chr6:33346897-33347033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:133-404
               
               
               Cow position:chr6:26155130-26155404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:133-406
               
               
               Cow position:chr6:21293518-21293240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:135-319
               
               
               Cow position:chr6:20605935-20606133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 164

               
               
               Conread position:135-378
               
               
               Cow position:chr6:36809227-36808969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:135-389
               
               
               Cow position:chr6:42567472-42567741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:137-376
               
               
               Cow position:chr6:35319153-35318902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 168

               
               
               Conread position:139-367
               
               
               Cow position:chr6:1103752-1103519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 162

               
               
               Conread position:139-378
               
               
               Cow position:chr6:20219794-20219546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:141-407
               
               
               Cow position:chr6:27219165-27219428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:141-407
               
               
               Cow position:chr6:32453373-32453651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:144-319
               
               
               Cow position:chr6:60451421-60451602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:146-378
               
               
               Cow position:chr6:42483410-42483648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:147-378
               
               
               Cow position:chr6:54831472-54831711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:151-372
               
               
               Cow position:chr6:29775623-29775845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):148, 12

               
               
               Conread position:151-390
               
               
               Cow position:chr6:60777761-60778014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 226

               
               
               Conread position:151-398
               
               
               Cow position:chr6:35727845-35728102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:151-398
               
               
               Cow position:chr6:47245779-47246036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:152-378
               
               
               Cow position:chr6:55548532-55548301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:154-378
               
               
               Cow position:chr6:55297094-55296859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:155-371
               
               
               Cow position:chr6:21467261-21467040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:155-375
               
               
               Cow position:chr6:54846278-54846046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:155-398
               
               
               Cow position:chr6:50810669-50810421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:155-409
               
               
               Cow position:chr6:12928150-12928405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):116, 55

               
               
               Conread position:157-404
               
               
               Cow position:chr6:46462376-46462120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:158-377
               
               
               Cow position:chr6:8369437-8369656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:158-401
               
               
               Cow position:chr6:57079430-57079684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:159-375
               
               
               Cow position:chr6:54127805-54127591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:159-399
               
               
               Cow position:chr6:55404914-55405169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:159-404
               
               
               Cow position:chr6:48435843-48436091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:160-318
               
               
               Cow position:chr6:49096442-49096279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):112, 59

               
               
               Conread position:160-319
               
               
               Cow position:chr6:41937265-41937095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-368
               
               
               Cow position:chr6:62539578-62539386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:160-375
               
               
               Cow position:chr6:48379605-48379381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:160-378
               
               
               Cow position:chr6:14063300-14063055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:160-378
               
               
               Cow position:chr6:16380553-16380781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:160-378
               
               
               Cow position:chr6:21475736-21475958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):111, 156

               
               
               Conread position:160-383
               
               
               Cow position:chr6:43787900-43787670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:160-407
               
               
               Cow position:chr6:26638390-26638656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:161-353
               
               
               Cow position:chr6:9832216-9832409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 139

               
               
               Conread position:161-375
               
               
               Cow position:chr6:1941822-1941604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:161-460
               
               
               Cow position:chr6:30023895-30024196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 146

               
               
               Conread position:162-318
               
               
               Cow position:chr6:23610953-23611111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 141

               
               
               Conread position:162-366
               
               
               Cow position:chr6:1871187-1870977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:162-378
               
               
               Cow position:chr6:19225363-19225159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:163-306
               
               
               Cow position:chr6:67806003-67805854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 145

               
               
               Conread position:163-309
               
               
               Cow position:chr6:7568135-7568289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:163-352
               
               
               Cow position:chr6:69153425-69153618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:163-364
               
               
               Cow position:chr6:21470417-21470214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 113

               
               
               Conread position:163-370
               
               
               Cow position:chr6:61681089-61681303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:163-375
               
               
               Cow position:chr6:35171617-35171844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 89

               
               
               Conread position:163-378
               
               
               Cow position:chr6:24536520-24536293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:163-378
               
               
               Cow position:chr6:67728387-67728611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:163-381
               
               
               Cow position:chr6:1475357-1475573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 172

               
               
               Conread position:163-403
               
               
               Cow position:chr6:37692763-37693010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:163-406
               
               
               Cow position:chr6:42034784-42035031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):74, 67

               
               
               Conread position:164-399
               
               
               Cow position:chr6:30502111-30501870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:165-351
               
               
               Cow position:chr6:31865112-31865300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 37

               
               
               Conread position:165-355
               
               
               Cow position:chr6:68364848-68365028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:165-370
               
               
               Cow position:chr6:65535157-65534943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:165-409
               
               
               Cow position:chr6:50504470-50504727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):105, 143

               
               
               Conread position:167-368
               
               
               Cow position:chr6:66947802-66947601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:169-371
               
               
               Cow position:chr6:39414838-39415050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:169-390
               
               
               Cow position:chr6:50771341-50771114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:169-403
               
               
               Cow position:chr6:42118720-42118951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):198, 103

               
               
               Conread position:170-378
               
               
               Cow position:chr6:28089029-28088814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):100, 159

               
               
               Conread position:171-380
               
               
               Cow position:chr6:62078943-62079153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:171-388
               
               
               Cow position:chr6:33150272-33150051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 127

               
               
               Conread position:173-319
               
               
               Cow position:chr6:21066862-21066707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:173-378
               
               
               Cow position:chr6:66259751-66259970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:173-381
               
               
               Cow position:chr6:47174005-47173801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):195, 18

               
               
               Conread position:175-370
               
               
               Cow position:chr6:30825742-30825552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):127, 51

               
               
               Conread position:175-378
               
               
               Cow position:chr6:16090927-16091130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 141

               
               
               Conread position:178-378
               
               
               Cow position:chr6:42728672-42728879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 171

               
               
               Conread position:178-379
               
               
               Cow position:chr6:50883651-50883444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:185-353
               
               
               Cow position:chr6:8468699-8468871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:186-370
               
               
               Cow position:chr6:55721655-55721831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):182, 73

               
               
               Conread position:186-407
               
               
               Cow position:chr6:12761314-12761542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:186-427
               
               
               Cow position:chr6:22876896-22876646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):83, 225

               
               
               Conread position:187-378
               
               
               Cow position:chr6:21184187-21183990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):72, 127

               
               
               Conread position:187-429
               
               
               Cow position:chr6:43906648-43906394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:188-372
               
               
               Cow position:chr6:29853028-29852828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:188-378
               
               
               Cow position:chr6:3936821-3937020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:189-386
               
               
               Cow position:chr6:21083503-21083300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:189-401
               
               
               Cow position:chr6:34569445-34569674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:190-365
               
               
               Cow position:chr6:15058415-15058594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:190-372
               
               
               Cow position:chr6:24514507-24514307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:191-360
               
               
               Cow position:chr6:30895953-30895776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:191-371
               
               
               Cow position:chr6:53711442-53711629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:191-378
               
               
               Cow position:chr6:69374793-69374601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:192-373
               
               
               Cow position:chr6:34380774-34380588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:192-378
               
               
               Cow position:chr6:15587554-15587359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:192-378
               
               
               Cow position:chr6:62724596-62724791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:193-370
               
               
               Cow position:chr6:46997754-46997564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:193-378
               
               
               Cow position:chr6:24776180-24776371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:193-402
               
               
               Cow position:chr6:55044600-55044382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:194-341
               
               
               Cow position:chr6:58076436-58076591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:194-375
               
               
               Cow position:chr6:15974477-15974293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:194-378
               
               
               Cow position:chr6:19563441-19563246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:194-378
               
               
               Cow position:chr6:36225151-36225343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:194-393
               
               
               Cow position:chr6:13742031-13742240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:195-390
               
               
               Cow position:chr6:24903532-24903330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:197-408
               
               
               Cow position:chr6:8187144-8186920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):74, 218

               
               
               Conread position:201-371
               
               
               Cow position:chr6:53811632-53811812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:201-378
               
               
               Cow position:chr6:35985087-35984901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:202-366
               
               
               Cow position:chr6:26054854-26054680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:202-372
               
               
               Cow position:chr6:16411662-16411840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:202-378
               
               
               Cow position:chr6:34722054-34721878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:202-378
               
               
               Cow position:chr6:45160007-45159822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:204-408
               
               
               Cow position:chr6:44544096-44543883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:205-378
               
               
               Cow position:chr6:57467650-57467832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:206-373
               
               
               Cow position:chr6:47022615-47022787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:206-378
               
               
               Cow position:chr6:68246779-68246598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:206-382
               
               
               Cow position:chr6:36938921-36939111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:206-398
               
               
               Cow position:chr6:48448879-48449069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:206-410
               
               
               Cow position:chr6:59297107-59297308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:207-398
               
               
               Cow position:chr6:58697576-58697375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:210-373
               
               
               Cow position:chr6:61644800-61644628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:210-378
               
               
               Cow position:chr6:14263832-14263656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:210-378
               
               
               Cow position:chr6:49685877-49686053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:210-399
               
               
               Cow position:chr6:28562110-28561914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:210-399
               
               
               Cow position:chr6:57299817-57300024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:210-407
               
               
               Cow position:chr6:411157-410959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:210-407
               
               
               Cow position:chr6:21052391-21052183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:210-408
               
               
               Cow position:chr6:30983578-30983772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:213-378
               
               
               Cow position:chr6:19936508-19936335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:213-378
               
               
               Cow position:chr6:26408443-26408269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:213-406
               
               
               Cow position:chr6:18440416-18440215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):58, 156

               
               
               Conread position:213-422
               
               
               Cow position:chr6:34076223-34076442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:219-421
               
               
               Cow position:chr6:62224489-62224699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 121

               
               
               Conread position:230-412
               
               
               Cow position:chr6:29851447-29851634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:283-372
               
               
               Cow position:chr6:30688373-30688282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 0
Show alignments to all cow chromosomes.
Conread position:	1-305
Cow position:	chr6:16316144-16316478 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	249
Alignm E-value:	0
Alignm gaps (pig, cow):	11, 0
Conread position:	1-365
Cow position:	chr6:1371385-1371011 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	254
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	85, 21
Conread position:	3-235
Cow position:	chr6:14850872-14850630 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	189
Alignm E-value:	8.00141e-43
Alignm gaps (pig, cow):	53, 206
Conread position:	3-265
Cow position:	chr6:54140655-54140911 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	210
Alignm E-value:	0
Alignm gaps (pig, cow):	38, 50
Conread position:	3-294
Cow position:	chr6:56843001-56843298 (view UCSC Genome Browser custom track)
Alignm length:	305
Alignm identity:	206
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	120, 78
Conread position:	3-296
Cow position:	chr6:38218514-38218819 (view UCSC Genome Browser custom track)
Alignm length:	311
Alignm identity:	226
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	53, 76
Conread position:	3-319
Cow position:	chr6:6343268-6343605 (view UCSC Genome Browser custom track)
Alignm length:	341
Alignm identity:	258
Alignm E-value:	0
Alignm gaps (pig, cow):	53, 88
Conread position:	3-375
Cow position:	chr6:29484932-29485313 (view UCSC Genome Browser custom track)
Alignm length:	387
Alignm identity:	258
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	51, 81
Conread position:	3-378
Cow position:	chr6:34475712-34475325 (view UCSC Genome Browser custom track)
Alignm length:	395
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 93
Conread position:	3-396
Cow position:	chr6:36202670-36203073 (view UCSC Genome Browser custom track)
Alignm length:	415
Alignm identity:	291
Alignm E-value:	0
Alignm gaps (pig, cow):	50, 81
Conread position:	3-419
Cow position:	chr6:13687969-13687545 (view UCSC Genome Browser custom track)
Alignm length:	434
Alignm identity:	289
Alignm E-value:	5e-39
Alignm gaps (pig, cow):	59, 40
Conread position:	4-375
Cow position:	chr6:28156302-28155943 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	268
Alignm E-value:	2.8026e-45
Alignm gaps (pig, cow):	50, 17
Conread position:	5-314
Cow position:	chr6:59069784-59069451 (view UCSC Genome Browser custom track)
Alignm length:	337
Alignm identity:	242
Alignm E-value:	7.00005e-41
Alignm gaps (pig, cow):	40, 91
Conread position:	5-360
Cow position:	chr6:54991158-54990786 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	253
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	40, 64
Conread position:	5-371
Cow position:	chr6:12337828-12338216 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	282
Alignm E-value:	0
Alignm gaps (pig, cow):	51, 318
Conread position:	6-268
Cow position:	chr6:23248118-23247849 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	198
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	36, 88
Conread position:	6-378
Cow position:	chr6:17345214-17345576 (view UCSC Genome Browser custom track)
Alignm length:	380
Alignm identity:	256
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	9, 166
Conread position:	6-381
Cow position:	chr6:31535726-31535337 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	265
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	39, 88
Conread position:	7-352
Cow position:	chr6:17817139-17816785 (view UCSC Genome Browser custom track)
Alignm length:	365
Alignm identity:	260
Alignm E-value:	9.80909e-45
Alignm gaps (pig, cow):	74, 34
Conread position:	8-378
Cow position:	chr6:9736793-9736412 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	272
Alignm E-value:	2.99878e-43
Alignm gaps (pig, cow):	182, 51