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Cow genome map

           
Conread name:
           
Ss1.1-Thy1-THY010030C05.5.5
        

               
Conread position:
               
1-197
               

               
Cow position:
               
chr9:11198113-11198320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr9:52637929-52638337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr9:17518264-17518594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 305
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr9:18342950-18342626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr9:17676894-17677260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr9:64091915-64091526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
3-378
               

               
Cow position:
               
chr9:51620663-51620280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr9:51011314-51011514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr9:30162389-30162123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr9:63153589-63153941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr9:3410994-3410758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr9:53211272-53211535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr9:28354743-28354418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
7-376
               

               
Cow position:
               
chr9:16811436-16811818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr9:17799852-17799471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr9:1879597-1879397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr9:59053898-59053622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
9-313
               

               
Cow position:
               
chr9:10308787-10309097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr9:6840232-6839842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr9:33218731-33219122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
10-162
               

               
Cow position:
               
chr9:38875354-38875515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr9:30749365-30749587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr9:50702892-50703128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
10-297
               

               
Cow position:
               
chr9:38961218-38961512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
10-319
               

               
Cow position:
               
chr9:11319412-11319741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr9:28948072-28947713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
10-365
               

               
Cow position:
               
chr9:33119662-33120042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr9:31347174-31346791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 223
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chr9:11123272-11123644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chr9:35128714-35128312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
10-378
               

               
Cow position:
               
chr9:56453552-56453182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chr9:54681722-54681354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 78
               

               
Conread position:
               
11-218
               

               
Cow position:
               
chr9:30195432-30195216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
11-358
               

               
Cow position:
               
chr9:9552306-9551949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr9:30402201-30402580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
11-403
               

               
Cow position:
               
chr9:23042995-23042614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
44, 66
               

               
Conread position:
               
12-117
               

               
Cow position:
               
chr9:37141446-37141342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
12-156
               

               
Cow position:
               
chr9:42585406-42585564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
12-161
               

               
Cow position:
               
chr9:36623234-36623383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
12-168
               

               
Cow position:
               
chr9:41995932-41995763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
12-188
               

               
Cow position:
               
chr9:49403970-49403792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
12-190
               

               
Cow position:
               
chr9:51891709-51891521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chr9:32812566-32812375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chr9:50667642-50667447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
12-196
               

               
Cow position:
               
chr9:18002731-18002930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr9:1909168-1909358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr9:35305902-35306095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr9:58439563-58439759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr9:39971257-39971069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr9:53602631-53602449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
12-199
               

               
Cow position:
               
chr9:30664560-30664759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 171
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr9:22227868-22228060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
100, 69
               

               
Conread position:
               
12-202
               

               
Cow position:
               
chr9:58734593-58734386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr9:6117929-6118132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 138
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr9:27077033-27077225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr9:34000398-34000603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr9:36999843-37000044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr9:57951111-57951304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
12-208
               

               
Cow position:
               
chr9:26390986-26390781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
12-211
               

               
Cow position:
               
chr9:29034821-29035027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
12-212
               

               
Cow position:
               
chr9:1712266-1712468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 42
               

               
Conread position:
               
12-216
               

               
Cow position:
               
chr9:10092175-10092390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr9:5399937-5399732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr9:5532171-5531937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr9:35359884-35360109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
12-227
               

               
Cow position:
               
chr9:32711150-32710922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
12-230
               

               
Cow position:
               
chr9:18162937-18163170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr9:20961070-20961291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr9:29108756-29108524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr9:33038240-33038473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 206
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr9:8868918-8869157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr9:26115680-26115922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
44, 210
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr9:3371797-3371546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr9:25958633-25958396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
12-247
               

               
Cow position:
               
chr9:34742510-34742751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
12-247
               

               
Cow position:
               
chr9:35533733-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
12-250
               

               
Cow position:
               
chr9:38344112-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
12-257
               

               
Cow position:
               
chr9:35850117-35849867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
12-260
               

               
Cow position:
               
chr9:20989236-20989498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
44, 140
               

               
Conread position:
               
12-263
               

               
Cow position:
               
chr9:38184260-38184509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
12-264
               

               
Cow position:
               
chr9:6339020-6338749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-264
               

               
Cow position:
               
chr9:7363245-7362984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
33, 225
               

               
Conread position:
               
12-264
               

               
Cow position:
               
chr9:17928990-17928713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:5319847-5319575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:6879988-6879732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:11192949-11193223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:35904533-35904792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:63194826-63194560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr9:32371543-32371799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr9:44914877-44915145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:6089315-6089040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:22114415-22114684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:25964606-25964882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:31077460-31077719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:31640100-31640374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:35375642-35375377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:44833747-44834012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 164
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:49982879-49983138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
33, 152
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr9:61493245-61492983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
12-270
               

               
Cow position:
               
chr9:5161848-5162100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
12-270
               

               
Cow position:
               
chr9:8534465-8534740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-270
               

               
Cow position:
               
chr9:39577952-39577689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr9:54611013-54611289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
12-279
               

               
Cow position:
               
chr9:11313289-11313569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:5763412-5763700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-297
               

               
Cow position:
               
chr9:5218961-5219256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
12-297
               

               
Cow position:
               
chr9:19714287-19713996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
12-301
               

               
Cow position:
               
chr9:45756578-45756275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
12-301
               

               
Cow position:
               
chr9:52001226-52000931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 156
               

               
Conread position:
               
12-308
               

               
Cow position:
               
chr9:8338248-8337933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-310
               

               
Cow position:
               
chr9:17410966-17411291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
12-311
               

               
Cow position:
               
chr9:5246067-5245753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
12-311
               

               
Cow position:
               
chr9:14796560-14796869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr9:26434849-26435158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr9:55074917-55075227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr9:64155638-64155949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr9:1950138-1949823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr9:50139499-50139183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr9:61997377-61997703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-315
               

               
Cow position:
               
chr9:15225072-15225399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
12-318
               

               
Cow position:
               
chr9:5594718-5594396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
12-318
               

               
Cow position:
               
chr9:9461437-9461760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
12-318
               

               
Cow position:
               
chr9:18216882-18217203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-318
               

               
Cow position:
               
chr9:37069351-37069664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
12-318
               

               
Cow position:
               
chr9:59386559-59386869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:1520512-1520846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:17310344-17310667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:22696435-22696116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:44467131-44467447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:51204943-51204625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr9:55084079-55084410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
12-322
               

               
Cow position:
               
chr9:31814160-31814496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr9:21888387-21888060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
12-327
               

               
Cow position:
               
chr9:59795061-59795391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 227
               

               
Conread position:
               
12-329
               

               
Cow position:
               
chr9:4267762-4268100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-329
               

               
Cow position:
               
chr9:8288835-8288502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
12-329
               

               
Cow position:
               
chr9:50080828-50081158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
12-330
               

               
Cow position:
               
chr9:4646110-4646437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr9:824173-823838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr9:9416189-9416517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 41
               

               
Conread position:
               
12-340
               

               
Cow position:
               
chr9:48106902-48107236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
12-341
               

               
Cow position:
               
chr9:22433723-22434057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr9:9443379-9443744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr9:41513837-41513504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr9:42445764-42446128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chr9:20416291-20416653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
12-355
               

               
Cow position:
               
chr9:24726460-24726808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
12-359
               

               
Cow position:
               
chr9:57896907-57897247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
12-360
               

               
Cow position:
               
chr9:8546536-8546193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
12-362
               

               
Cow position:
               
chr9:3186360-3185982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-365
               

               
Cow position:
               
chr9:10144254-10144635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr9:26278955-26279324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr9:29092022-29091619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr9:53257842-53258207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
12-367
               

               
Cow position:
               
chr9:5836380-5835993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
36, 323
               

               
Conread position:
               
12-367
               

               
Cow position:
               
chr9:23388460-23388832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr9:27697512-27697879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr9:11299478-11299829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr9:34468374-34468715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr9:38846131-38846497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 152
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr9:55287676-55288045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr9:56773301-56772905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr9:3070205-3070574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr9:8636870-8636521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr9:13670854-13670479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr9:30477566-30477929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr9:37017102-37016742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:5327472-5327104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 56
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:10011018-10010654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:13169450-13169823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:17871889-17872265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 309
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:18252705-18253078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:20091257-20090902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:20318859-20319205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:25546852-25546499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:25933279-25933640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:27279536-27279148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:33598199-33597815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:34957833-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:41789497-41789144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:52484699-52485070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:52578315-52578696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
12-372
               

               
Cow position:
               
chr9:54716403-54716775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
12-373
               

               
Cow position:
               
chr9:18215691-18216071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:9516552-9516909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:16300352-16300735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:41283245-41282851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 311
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:45285313-45285700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:46981014-46981383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
12-375
               

               
Cow position:
               
chr9:61739135-61738760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:1916505-1916144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:3387909-3387552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:5226946-5227324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 186
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:5433853-5433481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:6933854-6934245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:14974708-14975093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:15805703-15806090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:20406856-20406491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:20942392-20942783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:21459939-21460317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:22151869-22152246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:22318556-22318197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:22638318-22637935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:26344766-26345126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:29825254-29824853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 236
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:33940825-33940433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:35027955-35028331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:36410134-36410514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 235
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:42264439-42264057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:50977028-50977420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 160
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:52689406-52689778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:61544867-61544499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr9:63784705-63785073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
12-379
               

               
Cow position:
               
chr9:10118447-10118832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
12-380
               

               
Cow position:
               
chr9:34374711-34375093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
12-380
               

               
Cow position:
               
chr9:43757741-43757378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:1532114-1532481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:5442214-5441844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 257
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:9573553-9573153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:24887419-24887038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:26086285-26085890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 218
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:30138344-30137956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr9:9595736-9596118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr9:32307018-32307402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
12-383
               

               
Cow position:
               
chr9:28726505-28726898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
12-383
               

               
Cow position:
               
chr9:64106125-64105734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr9:8937366-8936976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr9:55118297-55117910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
12-388
               

               
Cow position:
               
chr9:1729458-1729865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
12-389
               

               
Cow position:
               
chr9:42498047-42497653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 194
               

               
Conread position:
               
12-390
               

               
Cow position:
               
chr9:1614938-1614527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 252
               

               
Conread position:
               
12-390
               

               
Cow position:
               
chr9:5756785-5757153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
12-390
               

               
Cow position:
               
chr9:36490677-36491080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
12-391
               

               
Cow position:
               
chr9:15215463-15215867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
12-391
               

               
Cow position:
               
chr9:17740726-17741116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
12-392
               

               
Cow position:
               
chr9:35167386-35166992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
12-395
               

               
Cow position:
               
chr9:56011715-56011329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
12-396
               

               
Cow position:
               
chr9:7410000-7409589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 308
               

               
Conread position:
               
12-398
               

               
Cow position:
               
chr9:20900912-20901304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
12-398
               

               
Cow position:
               
chr9:32732468-32732843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
12-398
               

               
Cow position:
               
chr9:45141387-45141780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
12-401
               

               
Cow position:
               
chr9:26057220-26057620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 185
               

               
Conread position:
               
12-402
               

               
Cow position:
               
chr9:33823316-33822928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
12-404
               

               
Cow position:
               
chr9:5501069-5500677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
12-405
               

               
Cow position:
               
chr9:9753177-9753593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 40
               

               
Conread position:
               
12-405
               

               
Cow position:
               
chr9:33681902-33681451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr9:8724014-8723605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr9:34697077-34697494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr9:49710062-49709648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
12-406
               

               
Cow position:
               
chr9:58979619-58979214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr9:18381077-18380675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr9:49764874-49764452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
12-408
               

               
Cow position:
               
chr9:23541200-23541594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
12-408
               

               
Cow position:
               
chr9:47869225-47868835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-409
               

               
Cow position:
               
chr9:24997296-24997697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
12-409
               

               
Cow position:
               
chr9:53762919-53762504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
12-409
               

               
Cow position:
               
chr9:62724764-62724347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
14, 235
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr9:9723662-9724076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
12-411
               

               
Cow position:
               
chr9:28747304-28747713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
12-413
               

               
Cow position:
               
chr9:388797-389194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
69, 138
               

               
Conread position:
               
12-420
               

               
Cow position:
               
chr9:12428288-12428708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 204
               

               
Conread position:
               
12-433
               

               
Cow position:
               
chr9:20321898-20322312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
12-437
               

               
Cow position:
               
chr9:6192241-6192681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
13-165
               

               
Cow position:
               
chr9:41416568-41416408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
13-300
               

               
Cow position:
               
chr9:36445840-36445539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
13-311
               

               
Cow position:
               
chr9:60110450-60110149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
13-319
               

               
Cow position:
               
chr9:1938343-1938017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
13-327
               

               
Cow position:
               
chr9:55890026-55889698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 220
               

               
Conread position:
               
13-357
               

               
Cow position:
               
chr9:5509941-5509592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chr9:32676903-32676529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 278
               

               
Conread position:
               
13-365
               

               
Cow position:
               
chr9:43623477-43623115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 155
               

               
Conread position:
               
13-368
               

               
Cow position:
               
chr9:647993-647620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
13-372
               

               
Cow position:
               
chr9:29184916-29185298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
13-378
               

               
Cow position:
               
chr9:32815855-32815488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
13-378
               

               
Cow position:
               
chr9:50606736-50607094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
112, 40
               

               
Conread position:
               
13-378
               

               
Cow position:
               
chr9:51566269-51566662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
13-378
               

               
Cow position:
               
chr9:52407387-52407006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 271
               

               
Conread position:
               
13-410
               

               
Cow position:
               
chr9:43207156-43207575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
14-167
               

               
Cow position:
               
chr9:9491009-9490847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
14-197
               

               
Cow position:
               
chr9:23028010-23027827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr9:20738918-20738708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr9:40604166-40603956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
14-225
               

               
Cow position:
               
chr9:1997354-1997131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
14-226
               

               
Cow position:
               
chr9:4128568-4128787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chr9:6225236-6225468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr9:28735694-28735463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chr9:8317246-8317490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
14-266
               

               
Cow position:
               
chr9:58972275-58972540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 244
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr9:58204882-58204625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr9:214251-214510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 21
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr9:21030532-21030258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
14-306
               

               
Cow position:
               
chr9:64050340-64050655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
14-314
               

               
Cow position:
               
chr9:766934-767250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
14-319
               

               
Cow position:
               
chr9:1973158-1972841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
14-319
               

               
Cow position:
               
chr9:53413036-53413345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
14-319
               

               
Cow position:
               
chr9:58133806-58134113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr9:43444011-43443692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
14-330
               

               
Cow position:
               
chr9:9199568-9199900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr9:29841103-29840786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
27, 169
               

               
Conread position:
               
14-340
               

               
Cow position:
               
chr9:33093170-33092832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
14-372
               

               
Cow position:
               
chr9:20681190-20681560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
14-372
               

               
Cow position:
               
chr9:56032112-56032475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
14-381
               

               
Cow position:
               
chr9:1751550-1751162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
14-381
               

               
Cow position:
               
chr9:5393267-5392906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
14-381
               

               
Cow position:
               
chr9:61846934-61847282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
14-382
               

               
Cow position:
               
chr9:26404005-26403627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
14-405
               

               
Cow position:
               
chr9:31626365-31625939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
14-406
               

               
Cow position:
               
chr9:42062332-42061900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
14-423
               

               
Cow position:
               
chr9:8998571-8998144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
15-238
               

               
Cow position:
               
chr9:1952054-1952288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
15-312
               

               
Cow position:
               
chr9:46316573-46316869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
15-327
               

               
Cow position:
               
chr9:19493244-19493569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
15-419
               

               
Cow position:
               
chr9:38793233-38792808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
16-185
               

               
Cow position:
               
chr9:29578458-29578281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
16-255
               

               
Cow position:
               
chr9:32625212-32624972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
16-270
               

               
Cow position:
               
chr9:44552961-44552697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
16-327
               

               
Cow position:
               
chr9:35101081-35100775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
16-376
               

               
Cow position:
               
chr9:52131235-52130850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
16-382
               

               
Cow position:
               
chr9:28983395-28983032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
16-402
               

               
Cow position:
               
chr9:34287009-34286612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
16-405
               

               
Cow position:
               
chr9:19539311-19538906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
17-180
               

               
Cow position:
               
chr9:42998254-42998431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
17-219
               

               
Cow position:
               
chr9:23527583-23527789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr9:8618005-8617734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
17-303
               

               
Cow position:
               
chr9:63746017-63745724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
17-318
               

               
Cow position:
               
chr9:3379332-3379038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
17-325
               

               
Cow position:
               
chr9:54528728-54528400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
17-338
               

               
Cow position:
               
chr9:28391818-28392156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
17-378
               

               
Cow position:
               
chr9:34901899-34902261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
18-200
               

               
Cow position:
               
chr9:64516883-64517079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
18-218
               

               
Cow position:
               
chr9:34919054-34919258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
18-257
               

               
Cow position:
               
chr9:13221681-13221929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
18-267
               

               
Cow position:
               
chr9:30652496-30652756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
18-366
               

               
Cow position:
               
chr9:15982866-15983226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
18-372
               

               
Cow position:
               
chr9:20318366-20318732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr9:7866278-7865907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
18-378
               

               
Cow position:
               
chr9:44710037-44709669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
19-266
               

               
Cow position:
               
chr9:32238589-32238335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
19-268
               

               
Cow position:
               
chr9:11068255-11068519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
19-299
               

               
Cow position:
               
chr9:25922034-25921737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr9:32816924-32817176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
20-257
               

               
Cow position:
               
chr9:5531813-5531562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr9:38614750-38615006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 223
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr9:49417197-49416939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
20-270
               

               
Cow position:
               
chr9:29684353-29684094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
20-362
               

               
Cow position:
               
chr9:4512701-4512334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
25, 212
               

               
Conread position:
               
20-372
               

               
Cow position:
               
chr9:49847404-49847058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
20-372
               

               
Cow position:
               
chr9:54677438-54677099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 58
               

               
Conread position:
               
20-389
               

               
Cow position:
               
chr9:34689399-34689780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
20-412
               

               
Cow position:
               
chr9:52505093-52505507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 149
               

               
Conread position:
               
21-355
               

               
Cow position:
               
chr9:64559678-64560028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
21-371
               

               
Cow position:
               
chr9:8920207-8919847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
22-376
               

               
Cow position:
               
chr9:6397569-6397948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
22-378
               

               
Cow position:
               
chr9:23970714-23971057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
22-389
               

               
Cow position:
               
chr9:4580212-4580559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr9:63905397-63905779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
24-203
               

               
Cow position:
               
chr9:3847874-3847685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
24-366
               

               
Cow position:
               
chr9:19903266-19902941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 19
               

               
Conread position:
               
24-375
               

               
Cow position:
               
chr9:22443417-22443784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr9:5209784-5209498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr9:8548019-8547645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr9:59078832-59078576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
26-372
               

               
Cow position:
               
chr9:25805038-25804670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
27-203
               

               
Cow position:
               
chr9:14358365-14358180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
27-257
               

               
Cow position:
               
chr9:41518418-41518663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
27-375
               

               
Cow position:
               
chr9:9815616-9815252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
27-377
               

               
Cow position:
               
chr9:53138928-53139298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 146
               

               
Conread position:
               
27-404
               

               
Cow position:
               
chr9:55321832-55321462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
28-372
               

               
Cow position:
               
chr9:31557526-31557888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
28-378
               

               
Cow position:
               
chr9:47500001-47500364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
29-299
               

               
Cow position:
               
chr9:50076263-50075978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
29-370
               

               
Cow position:
               
chr9:61303204-61302847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr9:56087870-56088242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
29-380
               

               
Cow position:
               
chr9:32019133-32019493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
100, 179
               

               
Conread position:
               
29-381
               

               
Cow position:
               
chr9:4340969-4341323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
29-405
               

               
Cow position:
               
chr9:58447922-58448318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
30-270
               

               
Cow position:
               
chr9:11201785-11201540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
30-304
               

               
Cow position:
               
chr9:62656997-62656712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chr9:40542319-40542040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
30-313
               

               
Cow position:
               
chr9:3738022-3738325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr9:37678087-37677788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
30-376
               

               
Cow position:
               
chr9:10650105-10650450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
30-378
               

               
Cow position:
               
chr9:19637442-19637783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
30-378
               

               
Cow position:
               
chr9:39428600-39428945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
30-382
               

               
Cow position:
               
chr9:4861588-4861228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr9:50543221-50543534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
31-340
               

               
Cow position:
               
chr9:48118498-48118810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr9:17634636-17634989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 140
               

               
Conread position:
               
31-405
               

               
Cow position:
               
chr9:40302930-40303326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
32-314
               

               
Cow position:
               
chr9:62668450-62668148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
32-318
               

               
Cow position:
               
chr9:39681551-39681234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
33-268
               

               
Cow position:
               
chr9:60027392-60027149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
33-353
               

               
Cow position:
               
chr9:47906083-47906428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
33-383
               

               
Cow position:
               
chr9:41679942-41679593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr9:4858738-4858485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
34-297
               

               
Cow position:
               
chr9:43871175-43870891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
34-380
               

               
Cow position:
               
chr9:6340505-6340852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
38-267
               

               
Cow position:
               
chr9:24873020-24872789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
38-374
               

               
Cow position:
               
chr9:3959248-3958911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
38-389
               

               
Cow position:
               
chr9:30124112-30123755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
39-372
               

               
Cow position:
               
chr9:1371123-1370777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 244
               

               
Conread position:
               
39-378
               

               
Cow position:
               
chr9:41728446-41728096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
39-381
               

               
Cow position:
               
chr9:19067968-19067602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
39-381
               

               
Cow position:
               
chr9:20579421-20579755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
40-353
               

               
Cow position:
               
chr9:26507315-26506976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 126
               

               
Conread position:
               
41-379
               

               
Cow position:
               
chr9:12225798-12226150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
42-401
               

               
Cow position:
               
chr9:56065736-56065380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
43-221
               

               
Cow position:
               
chr9:8525021-8524841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr9:31270964-31270775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
43-270
               

               
Cow position:
               
chr9:3774350-3774115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
43-326
               

               
Cow position:
               
chr9:9823319-9823615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
43-340
               

               
Cow position:
               
chr9:29191532-29191237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
44-344
               

               
Cow position:
               
chr9:23261615-23261302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
46-355
               

               
Cow position:
               
chr9:63896714-63896406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
49-359
               

               
Cow position:
               
chr9:44388829-44389140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
53-275
               

               
Cow position:
               
chr9:49292970-49293200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr9:31638467-31638764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
53-348
               

               
Cow position:
               
chr9:11168904-11168603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr9:8901050-8901393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr9:25557139-25556816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
103, 34
               

               
Conread position:
               
53-406
               

               
Cow position:
               
chr9:40215417-40215059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 178
               

               
Conread position:
               
54-269
               

               
Cow position:
               
chr9:27029531-27029754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
54-404
               

               
Cow position:
               
chr9:47590806-47591170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
12, 344
               

               
Conread position:
               
55-203
               

               
Cow position:
               
chr9:4323986-4324140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
55-381
               

               
Cow position:
               
chr9:16121340-16121006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
55-381
               

               
Cow position:
               
chr9:60394879-60395216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 260
               

               
Conread position:
               
56-372
               

               
Cow position:
               
chr9:6851897-6852209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
56-376
               

               
Cow position:
               
chr9:26477387-26477050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
56-378
               

               
Cow position:
               
chr9:39011306-39011631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr9:50202739-50202386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
58-398
               

               
Cow position:
               
chr9:48564251-48563894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
58-398
               

               
Cow position:
               
chr9:51720733-51721071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr9:12281137-12280809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 247
               

               
Conread position:
               
60-353
               

               
Cow position:
               
chr9:49374356-49374048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 152
               

               
Conread position:
               
60-375
               

               
Cow position:
               
chr9:1755975-1756312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
60-378
               

               
Cow position:
               
chr9:36857744-36857412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
60-378
               

               
Cow position:
               
chr9:62940874-62941185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 67
               

               
Conread position:
               
61-359
               

               
Cow position:
               
chr9:41394489-41394794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr9:11310027-11309664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
64-378
               

               
Cow position:
               
chr9:27345448-27345753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
206, 25
               

               
Conread position:
               
64-390
               

               
Cow position:
               
chr9:5456011-5456349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
20, 244
               

               
Conread position:
               
64-409
               

               
Cow position:
               
chr9:19034503-19034159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
65-270
               

               
Cow position:
               
chr9:3220300-3220086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
65-372
               

               
Cow position:
               
chr9:36843949-36843625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
66-264
               

               
Cow position:
               
chr9:10905653-10905861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
66-366
               

               
Cow position:
               
chr9:11303917-11304241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
66-378
               

               
Cow position:
               
chr9:27356081-27355754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
66-378
               

               
Cow position:
               
chr9:27358867-27358540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr9:31216249-31215912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
68-389
               

               
Cow position:
               
chr9:54493283-54492963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr9:52267599-52267896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
71-372
               

               
Cow position:
               
chr9:33114501-33114181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr9:22408896-22408593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
76-500
               

               
Cow position:
               
chr9:1867604-1867192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
78-392
               

               
Cow position:
               
chr9:52513302-52513641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 317
               

               
Conread position:
               
79-305
               

               
Cow position:
               
chr9:52839737-52839972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
80-196
               

               
Cow position:
               
chr9:5069212-5069090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr9:64064218-64064467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
80-371
               

               
Cow position:
               
chr9:4262944-4263246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
39, 134
               

               
Conread position:
               
80-376
               

               
Cow position:
               
chr9:18426066-18425747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
80-378
               

               
Cow position:
               
chr9:38624481-38624788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 292
               

               
Conread position:
               
81-314
               

               
Cow position:
               
chr9:26310650-26310417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
77, 196
               

               
Conread position:
               
81-319
               

               
Cow position:
               
chr9:28686539-28686280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-367
               

               
Cow position:
               
chr9:34284095-34283801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
81-420
               

               
Cow position:
               
chr9:48730575-48730222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 164
               

               
Conread position:
               
82-268
               

               
Cow position:
               
chr9:51557352-51557534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
82-376
               

               
Cow position:
               
chr9:52754720-52755014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
82-378
               

               
Cow position:
               
chr9:8628776-8629076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
82-382
               

               
Cow position:
               
chr9:64637691-64637384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
83-318
               

               
Cow position:
               
chr9:35105645-35105896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr9:2977008-2976772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
83-366
               

               
Cow position:
               
chr9:5399280-5399003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 197
               

               
Conread position:
               
83-371
               

               
Cow position:
               
chr9:63700633-63700922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
50, 178
               

               
Conread position:
               
83-372
               

               
Cow position:
               
chr9:32669802-32670104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
46, 273
               

               
Conread position:
               
84-268
               

               
Cow position:
               
chr9:43937084-43936897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
84-299
               

               
Cow position:
               
chr9:33697173-33696950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
85-303
               

               
Cow position:
               
chr9:10819689-10819919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
85-376
               

               
Cow position:
               
chr9:32348678-32348985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
85-378
               

               
Cow position:
               
chr9:40507470-40507757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
187, 24
               

               
Conread position:
               
86-378
               

               
Cow position:
               
chr9:3573612-3573300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 178
               

               
Conread position:
               
87-264
               

               
Cow position:
               
chr9:8306993-8306810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
90-245
               

               
Cow position:
               
chr9:35592145-35591986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
90-256
               

               
Cow position:
               
chr9:43013862-43013686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
90-269
               

               
Cow position:
               
chr9:23788571-23788390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
92-360
               

               
Cow position:
               
chr9:40005612-40005329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 215
               

               
Conread position:
               
93-404
               

               
Cow position:
               
chr9:13743797-13744123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
93-406
               

               
Cow position:
               
chr9:44396795-44396462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
99-305
               

               
Cow position:
               
chr9:28379095-28378875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
5, 95
               

               
Conread position:
               
99-309
               

               
Cow position:
               
chr9:52598599-52598818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
99-378
               

               
Cow position:
               
chr9:23955860-23956141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
99-406
               

               
Cow position:
               
chr9:4630234-4629916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
107-377
               

               
Cow position:
               
chr9:9358929-9358655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
5, 95
               

               
Conread position:
               
107-389
               

               
Cow position:
               
chr9:31648331-31648038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chr9:9311974-9311701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 217
               

               
Conread position:
               
110-378
               

               
Cow position:
               
chr9:37934124-37934403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
110-378
               

               
Cow position:
               
chr9:50125481-50125764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
110-378
               

               
Cow position:
               
chr9:60081018-60080729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
111-310
               

               
Cow position:
               
chr9:38645231-38645442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
111-318
               

               
Cow position:
               
chr9:53326639-53326848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
111-319
               

               
Cow position:
               
chr9:10877785-10877995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
111-319
               

               
Cow position:
               
chr9:46664933-46664718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
111-359
               

               
Cow position:
               
chr9:3353462-3353223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
111-364
               

               
Cow position:
               
chr9:20755644-20755908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
48, 136
               

               
Conread position:
               
111-370
               

               
Cow position:
               
chr9:29339213-29339468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
111-370
               

               
Cow position:
               
chr9:31359712-31359449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 91
               

               
Conread position:
               
111-372
               

               
Cow position:
               
chr9:11969299-11969028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 250
               

               
Conread position:
               
111-375
               

               
Cow position:
               
chr9:1877896-1878159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr9:25583942-25583667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr9:33584571-33584848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr9:34410284-34410557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
52, 192
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr9:45728890-45728613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
111-398
               

               
Cow position:
               
chr9:6189260-6189546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
160, 65
               

               
Conread position:
               
111-400
               

               
Cow position:
               
chr9:5899850-5900142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 78
               

               
Conread position:
               
111-405
               

               
Cow position:
               
chr9:38941320-38941628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
111-408
               

               
Cow position:
               
chr9:33411465-33411761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
155, 50
               

               
Conread position:
               
112-371
               

               
Cow position:
               
chr9:50310663-50310920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chr9:58131854-58132138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chr9:63853312-63853012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
115-313
               

               
Cow position:
               
chr9:55532922-55532724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
115-338
               

               
Cow position:
               
chr9:45171111-45171346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 207
               

               
Conread position:
               
116-371
               

               
Cow position:
               
chr9:21383848-21384099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
116-378
               

               
Cow position:
               
chr9:49863444-49863720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
120-267
               

               
Cow position:
               
chr9:23295225-23295372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
121-365
               

               
Cow position:
               
chr9:46930556-46930310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
121-373
               

               
Cow position:
               
chr9:29194921-29195191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
121-386
               

               
Cow position:
               
chr9:37139145-37138867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
122-366
               

               
Cow position:
               
chr9:56262007-56262260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 55
               

               
Conread position:
               
123-372
               

               
Cow position:
               
chr9:5163885-5164143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
123-373
               

               
Cow position:
               
chr9:25400097-25400346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
125-310
               

               
Cow position:
               
chr9:23797334-23797139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
126-267
               

               
Cow position:
               
chr9:13761199-13761052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
126-268
               

               
Cow position:
               
chr9:42298280-42298144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr9:41781750-41781555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
126-314
               

               
Cow position:
               
chr9:48100894-48100701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 183
               

               
Conread position:
               
126-378
               

               
Cow position:
               
chr9:9460072-9459825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
127-272
               

               
Cow position:
               
chr9:40776893-40776746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
127-375
               

               
Cow position:
               
chr9:17840579-17840840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
127-378
               

               
Cow position:
               
chr9:16217069-16216814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
127-378
               

               
Cow position:
               
chr9:39709940-39709689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr9:34278959-34279226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
127-406
               

               
Cow position:
               
chr9:6954151-6954446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
128-312
               

               
Cow position:
               
chr9:9503174-9502991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
128-313
               

               
Cow position:
               
chr9:18827960-18828153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 174
               

               
Conread position:
               
128-314
               

               
Cow position:
               
chr9:43342424-43342229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr9:28263612-28263358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr9:37199218-37198969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
141, 35
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr9:35547366-35547101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr9:45445259-45444995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr9:52511209-52510951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
129-360
               

               
Cow position:
               
chr9:35832522-35832762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
129-373
               

               
Cow position:
               
chr9:5469956-5469710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
129-382
               

               
Cow position:
               
chr9:23632566-23632830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 58
               

               
Conread position:
               
129-417
               

               
Cow position:
               
chr9:5342158-5342451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
130-369
               

               
Cow position:
               
chr9:8834037-8834285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
131-268
               

               
Cow position:
               
chr9:38289233-38289370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
131-306
               

               
Cow position:
               
chr9:42478390-42478576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
131-372
               

               
Cow position:
               
chr9:26102815-26102574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
132-378
               

               
Cow position:
               
chr9:58662329-58662079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
132-393
               

               
Cow position:
               
chr9:5649882-5650140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
133-382
               

               
Cow position:
               
chr9:29819805-29819558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
135-378
               

               
Cow position:
               
chr9:5110947-5110692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
136-294
               

               
Cow position:
               
chr9:47469999-47469839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
136-302
               

               
Cow position:
               
chr9:3343835-3343659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
136-378
               

               
Cow position:
               
chr9:63170056-63169805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
137-356
               

               
Cow position:
               
chr9:33542142-33541911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
139-373
               

               
Cow position:
               
chr9:33838227-33838467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
139-383
               

               
Cow position:
               
chr9:7805879-7806123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
18, 150
               

               
Conread position:
               
144-378
               

               
Cow position:
               
chr9:41785290-41785057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
145-355
               

               
Cow position:
               
chr9:52030554-52030336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
147-378
               

               
Cow position:
               
chr9:47517273-47517033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
150-310
               

               
Cow position:
               
chr9:32991340-32991183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr9:32955614-32955852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 201
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr9:50382260-50382476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
151-378
               

               
Cow position:
               
chr9:12337973-12337736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 165
               

               
Conread position:
               
151-382
               

               
Cow position:
               
chr9:54664923-54664680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
152-369
               

               
Cow position:
               
chr9:47214478-47214704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
153-362
               

               
Cow position:
               
chr9:54411091-54411308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
154-319
               

               
Cow position:
               
chr9:39758583-39758409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
154-363
               

               
Cow position:
               
chr9:24652470-24652251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
154-372
               

               
Cow position:
               
chr9:48017711-48017925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
147, 8
               

               
Conread position:
               
157-309
               

               
Cow position:
               
chr9:5072775-5072929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
157-354
               

               
Cow position:
               
chr9:64629301-64629502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
157-373
               

               
Cow position:
               
chr9:31513877-31514094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
157-398
               

               
Cow position:
               
chr9:29984528-29984277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
158-372
               

               
Cow position:
               
chr9:34484657-34484432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
159-305
               

               
Cow position:
               
chr9:34973650-34973804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
159-364
               

               
Cow position:
               
chr9:58368936-58369142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
159-376
               

               
Cow position:
               
chr9:54986094-54986323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
159-448
               

               
Cow position:
               
chr9:52763699-52763987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
110, 125
               

               
Conread position:
               
160-351
               

               
Cow position:
               
chr9:52258006-52258202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
160-369
               

               
Cow position:
               
chr9:44584652-44584447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
160-409
               

               
Cow position:
               
chr9:42586496-42586739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
231, 114
               

               
Conread position:
               
161-378
               

               
Cow position:
               
chr9:35049532-35049316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
184, 133
               

               
Conread position:
               
161-381
               

               
Cow position:
               
chr9:57131554-57131331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 139
               

               
Conread position:
               
162-378
               

               
Cow position:
               
chr9:44758874-44759091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
163-287
               

               
Cow position:
               
chr9:40619821-40619691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
163-287
               

               
Cow position:
               
chr9:42242210-42242080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
163-319
               

               
Cow position:
               
chr9:8562877-8562715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
107, 63
               

               
Conread position:
               
163-368
               

               
Cow position:
               
chr9:55494929-55495142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
163-375
               

               
Cow position:
               
chr9:45749498-45749271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
163-378
               

               
Cow position:
               
chr9:8992122-8992343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
108, 146
               

               
Conread position:
               
163-378
               

               
Cow position:
               
chr9:33347433-33347645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
148, 109
               

               
Conread position:
               
163-378
               

               
Cow position:
               
chr9:48017038-48016825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
163-381
               

               
Cow position:
               
chr9:34024756-34024532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
107, 146
               

               
Conread position:
               
163-387
               

               
Cow position:
               
chr9:55529852-55529630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 58
               

               
Conread position:
               
164-308
               

               
Cow position:
               
chr9:31098828-31098981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
164-369
               

               
Cow position:
               
chr9:56827537-56827318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
164-372
               

               
Cow position:
               
chr9:41964679-41964890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
105, 88
               

               
Conread position:
               
165-372
               

               
Cow position:
               
chr9:14738304-14738094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 135
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr9:904248-904401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
166-354
               

               
Cow position:
               
chr9:4181495-4181691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
166-378
               

               
Cow position:
               
chr9:28156747-28156536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 100
               

               
Conread position:
               
167-378
               

               
Cow position:
               
chr9:25375683-25375897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
168-373
               

               
Cow position:
               
chr9:7101495-7101275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
169-390
               

               
Cow position:
               
chr9:21292356-21292583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
170-370
               

               
Cow position:
               
chr9:7859587-7859794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
170-410
               

               
Cow position:
               
chr9:39135578-39135814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
171-319
               

               
Cow position:
               
chr9:54051823-54051669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
171-378
               

               
Cow position:
               
chr9:12786424-12786640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
171-378
               

               
Cow position:
               
chr9:16121572-16121366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
122, 95
               

               
Conread position:
               
171-378
               

               
Cow position:
               
chr9:44822275-44822486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
100, 137
               

               
Conread position:
               
171-401
               

               
Cow position:
               
chr9:38865934-38866166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
172-378
               

               
Cow position:
               
chr9:41644702-41644917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
172-421
               

               
Cow position:
               
chr9:11030232-11029985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
173-366
               

               
Cow position:
               
chr9:53124135-53123935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 5
               

               
Conread position:
               
173-378
               

               
Cow position:
               
chr9:32858585-32858808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
173-409
               

               
Cow position:
               
chr9:39149126-39148887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
173-414
               

               
Cow position:
               
chr9:44527153-44526907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 48
               

               
Conread position:
               
174-390
               

               
Cow position:
               
chr9:34423668-34423442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr9:48115725-48115527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 123
               

               
Conread position:
               
175-375
               

               
Cow position:
               
chr9:60355167-60355361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
192, 97
               

               
Conread position:
               
177-372
               

               
Cow position:
               
chr9:22165670-22165875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
177-378
               

               
Cow position:
               
chr9:36458044-36457832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
178-366
               

               
Cow position:
               
chr9:20637415-20637224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
178-386
               

               
Cow position:
               
chr9:42687719-42687917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
190, 24
               

               
Conread position:
               
179-371
               

               
Cow position:
               
chr9:3924484-3924299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
189, 53
               

               
Conread position:
               
179-378
               

               
Cow position:
               
chr9:7805815-7805620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
180-376
               

               
Cow position:
               
chr9:8767375-8767577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 135
               

               
Conread position:
               
180-399
               

               
Cow position:
               
chr9:34034295-34034085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
187, 49
               

               
Conread position:
               
182-378
               

               
Cow position:
               
chr9:8613173-8613377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 175
               

               
Conread position:
               
183-350
               

               
Cow position:
               
chr9:44093047-44093220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
183-399
               

               
Cow position:
               
chr9:31693995-31694225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
183-409
               

               
Cow position:
               
chr9:41416370-41416139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 206
               

               
Conread position:
               
184-383
               

               
Cow position:
               
chr9:35466486-35466691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 189
               

               
Conread position:
               
185-372
               

               
Cow position:
               
chr9:37955136-37955332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
185-378
               

               
Cow position:
               
chr9:35306311-35306513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
188-365
               

               
Cow position:
               
chr9:62631639-62631817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
188-378
               

               
Cow position:
               
chr9:11271323-11271507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
188-402
               

               
Cow position:
               
chr9:8537339-8537118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
189-376
               

               
Cow position:
               
chr9:37950869-37951062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
189-378
               

               
Cow position:
               
chr9:30664957-30665164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
189-392
               

               
Cow position:
               
chr9:11427694-11427468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 216
               

               
Conread position:
               
190-372
               

               
Cow position:
               
chr9:34707282-34707468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
80, 64
               

               
Conread position:
               
191-321
               

               
Cow position:
               
chr9:34135745-34135607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr9:5068870-5068679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
191-381
               

               
Cow position:
               
chr9:22803942-22804136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
191-408
               

               
Cow position:
               
chr9:41470069-41470297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
77, 225
               

               
Conread position:
               
192-376
               

               
Cow position:
               
chr9:43680148-43679959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 141
               

               
Conread position:
               
192-378
               

               
Cow position:
               
chr9:9557714-9557519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
192-378
               

               
Cow position:
               
chr9:31344579-31344774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
193-380
               

               
Cow position:
               
chr9:1884103-1884307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chr9:35295717-35295499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
194-372
               

               
Cow position:
               
chr9:3847428-3847237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
194-372
               

               
Cow position:
               
chr9:40603694-40603509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
195-391
               

               
Cow position:
               
chr9:7543234-7543434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
195-398
               

               
Cow position:
               
chr9:34760339-34760551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
196-378
               

               
Cow position:
               
chr9:19718316-19718498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
196-378
               

               
Cow position:
               
chr9:28718736-28718553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
196-408
               

               
Cow position:
               
chr9:48809162-48808952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
197-382
               

               
Cow position:
               
chr9:52648835-52649014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
171, 8
               

               
Conread position:
               
197-406
               

               
Cow position:
               
chr9:53631903-53632114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
200-373
               

               
Cow position:
               
chr9:1712686-1712867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
200-378
               

               
Cow position:
               
chr9:8468079-8467895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
200-378
               

               
Cow position:
               
chr9:12773710-12773530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 105
               

               
Conread position:
               
201-381
               

               
Cow position:
               
chr9:22447276-22447461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
201-406
               

               
Cow position:
               
chr9:24079321-24079116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
202-372
               

               
Cow position:
               
chr9:16115590-16115763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
202-378
               

               
Cow position:
               
chr9:34276192-34276377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
202-391
               

               
Cow position:
               
chr9:13993783-13993585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr9:8645285-8645080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr9:36401647-36401843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
204-406
               

               
Cow position:
               
chr9:20828921-20828711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 7
               

               
Conread position:
               
205-389
               

               
Cow position:
               
chr9:32773228-32773047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
163, 65
               

               
Conread position:
               
205-406
               

               
Cow position:
               
chr9:5772662-5772872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
205-406
               

               
Cow position:
               
chr9:8016887-8016679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 198
               

               
Conread position:
               
207-378
               

               
Cow position:
               
chr9:11447798-11447971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
208-391
               

               
Cow position:
               
chr9:17769329-17769144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
209-372
               

               
Cow position:
               
chr9:44625223-44625061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
210-371
               

               
Cow position:
               
chr9:34362748-34362579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
210-378
               

               
Cow position:
               
chr9:28315439-28315260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
210-378
               

               
Cow position:
               
chr9:34917175-34917341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
210-378
               

               
Cow position:
               
chr9:61286772-61286597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
210-382
               

               
Cow position:
               
chr9:36634517-36634336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
210-396
               

               
Cow position:
               
chr9:1403526-1403722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
210-397
               

               
Cow position:
               
chr9:4256977-4257160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
210-402
               

               
Cow position:
               
chr9:9091095-9091298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chr9:17785556-17785762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 200
               

               
Conread position:
               
210-408
               

               
Cow position:
               
chr9:48282212-48281999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 210
               

               
Conread position:
               
210-409
               

               
Cow position:
               
chr9:40221176-40221379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
213-378
               

               
Cow position:
               
chr9:54598680-54598509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
213-382
               

               
Cow position:
               
chr9:36623918-36624096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
213-402
               

               
Cow position:
               
chr9:34964736-34964929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
213-409
               

               
Cow position:
               
chr9:17027204-17027001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
214-383
               

               
Cow position:
               
chr9:20712842-20712669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 96
               

               
Conread position:
               
214-405
               

               
Cow position:
               
chr9:26388214-26388032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
214-405
               

               
Cow position:
               
chr9:61019356-61019556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
215-421
               

               
Cow position:
               
chr9:6447113-6446897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
217-381
               

               
Cow position:
               
chr9:59897597-59897429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
217-406
               

               
Cow position:
               
chr9:12355789-12355593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
221-378
               

               
Cow position:
               
chr9:26394350-26394512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
227-373
               

               
Cow position:
               
chr9:28342658-28342814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
227-375
               

               
Cow position:
               
chr9:53323791-53323948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
228-378
               

               
Cow position:
               
chr9:35932822-35932978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
228-378
               

               
Cow position:
               
chr9:51891238-51891087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 87
               

               
Conread position:
               
231-399
               

               
Cow position:
               
chr9:60741195-60741370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 76
               
Show alignments to all cow chromosomes.