Cow genome map
| Conread name: | Ss1.1-Thy1-THY010053E03.5 |
| Conread position: | 123-348 |
| Cow position: | chr1:33712899-33713125 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 100, 151 |
| Conread position: | 124-335 |
| Cow position: | chr1:20829716-20829945 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 130-348 |
| Cow position: | chr1:38416699-38416933 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 151-339 |
| Cow position: | chr1:18016102-18016293 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 185 |
| Conread position: | 223-338 |
| Cow position: | chr1:57568867-57568979 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 223-347 |
| Cow position: | chr1:85779514-85779391 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 225-347 |
| Cow position: | chr1:58882849-58882727 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-332 |
| Cow position: | chr1:81863571-81863465 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 64 |
| Conread position: | 226-339 |
| Cow position: | chr1:59209216-59209102 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 226-347 |
| Cow position: | chr1:21999020-21998901 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 226-347 |
| Cow position: | chr1:93855450-93855572 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 231-333 |
| Cow position: | chr1:9259418-9259520 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-333 |
| Cow position: | chr1:30282761-30282659 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-333 |
| Cow position: | chr1:91892179-91892077 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-334 |
| Cow position: | chr1:34693629-34693732 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-336 |
| Cow position: | chr1:73070119-73070014 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-337 |
| Cow position: | chr1:79636042-79635936 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-338 |
| Cow position: | chr1:3934321-3934214 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-338 |
| Cow position: | chr1:67287760-67287867 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-338 |
| Cow position: | chr1:72081706-72081813 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-342 |
| Cow position: | chr1:40054575-40054686 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-344 |
| Cow position: | chr1:25550901-25551014 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:5356066-5356182 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:5502906-5503022 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:6195174-6195290 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:8555268-8555385 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:8825987-8826103 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:12061274-12061158 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:17940858-17940742 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:24443391-24443274 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:25179090-25178973 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:28711831-28711947 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:28874020-28874136 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:29363233-29363349 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:31365158-31365043 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:31397631-31397748 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:33551866-33551982 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:42737397-42737513 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:44044722-44044838 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:48246776-48246892 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:49973248-49973132 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:52358319-52358203 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:53199478-53199594 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 231-347 |
| Cow position: | chr1:55777523-55777639 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:56143397-56143281 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:56193231-56193115 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:57657825-57657943 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:58336777-58336893 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:60340239-60340356 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:61310160-61310276 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:62805241-62805124 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:63604837-63604718 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:65387259-65387375 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:68606602-68606486 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:69921495-69921379 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:71561633-71561517 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:72185942-72185826 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:74285850-74285734 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:76544596-76544480 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:76620744-76620628 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:82653603-82653719 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:86595557-86595441 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:88131713-88131829 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:94660614-94660729 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:99914363-99914481 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 231-347 |
| Cow position: | chr1:102434101-102433985 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-348 |
| Cow position: | chr1:72038630-72038512 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 231-348 |
| Cow position: | chr1:77115763-77115646 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-338 |
| Cow position: | chr1:18241579-18241473 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-347 |
| Cow position: | chr1:26517945-26517832 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 232-347 |
| Cow position: | chr1:30534080-30533965 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-347 |
| Cow position: | chr1:62243703-62243588 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-348 |
| Cow position: | chr1:76703344-76703229 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 103, 109 |
| Conread position: | 238-343 |
| Cow position: | chr1:32566975-32566870 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.