Cow genome map
| Conread name: | Ss1.1-Thy1-THY010055G04.5.135 |
| Conread position: | 25-185 |
| Cow position: | chr23:21262998-21263154 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 25-188 |
| Cow position: | chr23:21236046-21236209 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-185 |
| Cow position: | chr23:22948008-22948151 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 37-186 |
| Cow position: | chr23:21278710-21278856 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 44-185 |
| Cow position: | chr23:5385292-5385432 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 183-424 |
| Cow position: | chr23:5449025-5448784 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-465 |
| Cow position: | chr23:5390957-5391241 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 233 |
| Conread position: | 183-467 |
| Cow position: | chr23:21283947-21284234 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 186-464 |
| Cow position: | chr23:21242343-21242621 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-464 |
| Cow position: | chr23:22932422-22932700 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 215-424 |
| Cow position: | chr23:5464267-5464058 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-741 |
| Cow position: | chr23:5398918-5399202 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-739 |
| Cow position: | chr23:5446513-5446235 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-741 |
| Cow position: | chr23:21267650-21267923 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 461-741 |
| Cow position: | chr23:22907855-22908132 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 461-757 |
| Cow position: | chr23:21244789-21245086 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 461-757 |
| Cow position: | chr23:22934740-22935037 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 461-757 |
| Cow position: | chr23:22957047-22957344 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 470-741 |
| Cow position: | chr23:5463567-5463296 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 741-852 |
| Cow position: | chr23:21245812-21245923 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 741-852 |
| Cow position: | chr23:21268654-21268765 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 741-852 |
| Cow position: | chr23:22908834-22908945 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 741-852 |
| Cow position: | chr23:22958043-22958154 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 743-852 |
| Cow position: | chr23:22936840-22936949 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 847-1238 |
| Cow position: | chr23:22937697-22938065 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 873-1232 |
| Cow position: | chr23:21269560-21269891 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 167, 37 |
| Conread position: | 873-1238 |
| Cow position: | chr23:21246706-21247067 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 37 |
Show alignments to all cow chromosomes.