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Cow genome map

           
Conread name:
           
Ss1.1-Thy1-THY010064A03.5
        

               
Conread position:
               
46-796
               

               
Cow position:
               
chr11:42310938-42310205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
48-785
               

               
Cow position:
               
chr11:21470302-21471029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
50-677
               

               
Cow position:
               
chr11:14261724-14261110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 68
               

               
Conread position:
               
50-800
               

               
Cow position:
               
chr11:15126287-15127063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
800
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
52-394
               

               
Cow position:
               
chr11:25182270-25182590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
52-528
               

               
Cow position:
               
chr11:25393699-25394165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
224, 63
               

               
Conread position:
               
52-780
               

               
Cow position:
               
chr11:10957315-10958046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 165
               

               
Conread position:
               
53-246
               

               
Cow position:
               
chr11:32453343-32453530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
53-364
               

               
Cow position:
               
chr11:1488667-1488376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
238, 67
               

               
Conread position:
               
53-664
               

               
Cow position:
               
chr11:31863598-31864183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 69
               

               
Conread position:
               
53-717
               

               
Cow position:
               
chr11:42371320-42371977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 69
               

               
Conread position:
               
53-780
               

               
Cow position:
               
chr11:19100980-19100256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 66
               

               
Conread position:
               
53-781
               

               
Cow position:
               
chr11:4054824-4054071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
53-790
               

               
Cow position:
               
chr11:9733171-9732439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 67
               

               
Conread position:
               
53-800
               

               
Cow position:
               
chr11:53430521-53429776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 66
               

               
Conread position:
               
54-201
               

               
Cow position:
               
chr11:67452005-67452145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-237
               

               
Cow position:
               
chr11:44094109-44093932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-237
               

               
Cow position:
               
chr11:53285664-53285486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
54-276
               

               
Cow position:
               
chr11:44517353-44517136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
54-335
               

               
Cow position:
               
chr11:72309527-72309263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
54-352
               

               
Cow position:
               
chr11:9224072-9223793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
54-406
               

               
Cow position:
               
chr11:10848950-10849286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-406
               

               
Cow position:
               
chr11:44581830-44581497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-410
               

               
Cow position:
               
chr11:67155189-67155524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
340, 68
               

               
Conread position:
               
54-411
               

               
Cow position:
               
chr11:26549038-26549379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-451
               

               
Cow position:
               
chr11:86876371-86875996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 66
               

               
Conread position:
               
54-453
               

               
Cow position:
               
chr11:27657949-27658330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 68
               

               
Conread position:
               
54-453
               

               
Cow position:
               
chr11:61399592-61399201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 63
               

               
Conread position:
               
54-463
               

               
Cow position:
               
chr11:17118836-17118446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 64
               

               
Conread position:
               
54-484
               

               
Cow position:
               
chr11:67845059-67844650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 66
               

               
Conread position:
               
54-503
               

               
Cow position:
               
chr11:50836155-50835724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 83
               

               
Conread position:
               
54-508
               

               
Cow position:
               
chr11:44042220-44042666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 65
               

               
Conread position:
               
54-520
               

               
Cow position:
               
chr11:22725146-22725596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
54-612
               

               
Cow position:
               
chr11:50948800-50948266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 68
               

               
Conread position:
               
54-613
               

               
Cow position:
               
chr11:21446143-21446698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
54-753
               

               
Cow position:
               
chr11:11590479-11591169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 60
               

               
Conread position:
               
54-764
               

               
Cow position:
               
chr11:73134809-73135514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 66
               

               
Conread position:
               
54-777
               

               
Cow position:
               
chr11:35253791-35253069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 71
               

               
Conread position:
               
54-779
               

               
Cow position:
               
chr11:4033897-4033172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
54-779
               

               
Cow position:
               
chr11:4268654-4267921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:419222-418492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 73
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:8445618-8444890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:12356889-12356165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 65
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:15986755-15987486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:19062564-19061845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 66
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:20732721-20731993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 68
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:27726407-27725671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 66
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:27835221-27834518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 65
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:28228256-28227548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 66
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:30253736-30254459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 68
               

               
Conread position:
               
54-784
               

               
Cow position:
               
chr11:37070819-37070118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
54-790
               

               
Cow position:
               
chr11:32479308-32478577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 68
               

               
Conread position:
               
54-792
               

               
Cow position:
               
chr11:8265028-8265766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 56
               

               
Conread position:
               
54-800
               

               
Cow position:
               
chr11:23881535-23882256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 65
               

               
Conread position:
               
54-800
               

               
Cow position:
               
chr11:24394824-24395561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-800
               

               
Cow position:
               
chr11:44253583-44254322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-804
               

               
Cow position:
               
chr11:26123410-26122668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 65
               

               
Conread position:
               
54-804
               

               
Cow position:
               
chr11:47738035-47737292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 66
               

               
Conread position:
               
54-804
               

               
Cow position:
               
chr11:49238450-49237704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 68
               

               
Conread position:
               
55-671
               

               
Cow position:
               
chr11:66860976-66860365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 10
               

               
Conread position:
               
55-712
               

               
Cow position:
               
chr11:7317426-7318074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
294, 71
               

               
Conread position:
               
55-765
               

               
Cow position:
               
chr11:26069532-26068849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 67
               

               
Conread position:
               
55-800
               

               
Cow position:
               
chr11:3227258-3227982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
147, 10
               

               
Conread position:
               
56-492
               

               
Cow position:
               
chr11:60032724-60032314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
56-784
               

               
Cow position:
               
chr11:17106174-17105452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 64
               

               
Conread position:
               
58-639
               

               
Cow position:
               
chr11:12318502-12317932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 61
               

               
Conread position:
               
59-319
               

               
Cow position:
               
chr11:73468378-73468137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
59-659
               

               
Cow position:
               
chr11:85732527-85731929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
193, 155
               

               
Conread position:
               
59-750
               

               
Cow position:
               
chr11:20753266-20752587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
59-779
               

               
Cow position:
               
chr11:26784767-26785480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 67
               

               
Conread position:
               
59-784
               

               
Cow position:
               
chr11:7117928-7118643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 51
               

               
Conread position:
               
60-237
               

               
Cow position:
               
chr11:18127954-18127783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
61-311
               

               
Cow position:
               
chr11:30189244-30189475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
217, 62
               

               
Conread position:
               
61-392
               

               
Cow position:
               
chr11:40405534-40405221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
311, 61
               

               
Conread position:
               
61-498
               

               
Cow position:
               
chr11:51042841-51043263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
61-507
               

               
Cow position:
               
chr11:30208657-30209091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
61-639
               

               
Cow position:
               
chr11:58137928-58138497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
61-685
               

               
Cow position:
               
chr11:43513110-43512505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 58
               

               
Conread position:
               
61-724
               

               
Cow position:
               
chr11:47758762-47758090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
61-753
               

               
Cow position:
               
chr11:9204352-9203678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
61-764
               

               
Cow position:
               
chr11:29667075-29666378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 66
               

               
Conread position:
               
61-781
               

               
Cow position:
               
chr11:3494509-3495211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 59
               

               
Conread position:
               
61-784
               

               
Cow position:
               
chr11:17547676-17548389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 55
               

               
Conread position:
               
61-784
               

               
Cow position:
               
chr11:85392314-85391594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 58
               

               
Conread position:
               
61-800
               

               
Cow position:
               
chr11:24291979-24292702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 49
               

               
Conread position:
               
61-801
               

               
Cow position:
               
chr11:13064456-13063738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 36
               

               
Conread position:
               
62-497
               

               
Cow position:
               
chr11:46779342-46778929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 61
               

               
Conread position:
               
62-659
               

               
Cow position:
               
chr11:3262004-3262597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
147, 65
               

               
Conread position:
               
62-689
               

               
Cow position:
               
chr11:49557756-49557153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
310, 21
               

               
Conread position:
               
62-795
               

               
Cow position:
               
chr11:49038861-49038150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
62-798
               

               
Cow position:
               
chr11:27668235-27667517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 70
               

               
Conread position:
               
62-800
               

               
Cow position:
               
chr11:55271038-55270300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
63-800
               

               
Cow position:
               
chr11:32079266-32078534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
63-800
               

               
Cow position:
               
chr11:41169185-41168449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 56
               

               
Conread position:
               
64-482
               

               
Cow position:
               
chr11:4026089-4025696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 55
               

               
Conread position:
               
65-784
               

               
Cow position:
               
chr11:40774504-40773800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 45
               

               
Conread position:
               
65-800
               

               
Cow position:
               
chr11:33603114-33602384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 27
               

               
Conread position:
               
68-800
               

               
Cow position:
               
chr11:31927677-31928418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
73-597
               

               
Cow position:
               
chr11:87143113-87143627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
275, 46
               

               
Conread position:
               
75-410
               

               
Cow position:
               
chr11:86542554-86542231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
281, 28
               

               
Conread position:
               
78-479
               

               
Cow position:
               
chr11:28713875-28714256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 42
               

               
Conread position:
               
81-492
               

               
Cow position:
               
chr11:82147246-82146858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
84-784
               

               
Cow position:
               
chr11:32453593-32454291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 36
               

               
Conread position:
               
85-726
               

               
Cow position:
               
chr11:13048252-13047634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 52
               

               
Conread position:
               
86-508
               

               
Cow position:
               
chr11:63653771-63653363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 140
               

               
Conread position:
               
88-753
               

               
Cow position:
               
chr11:52421008-52421669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 32
               

               
Conread position:
               
88-784
               

               
Cow position:
               
chr11:7720844-7720157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 22
               

               
Conread position:
               
96-411
               

               
Cow position:
               
chr11:63647609-63647907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
279, 23
               

               
Conread position:
               
99-800
               

               
Cow position:
               
chr11:44232023-44232690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
257, 23
               

               
Conread position:
               
103-800
               

               
Cow position:
               
chr11:36764202-36764918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 132
               

               
Conread position:
               
104-753
               

               
Cow position:
               
chr11:54482952-54482308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 28
               

               
Conread position:
               
116-784
               

               
Cow position:
               
chr11:71331065-71331732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
123-800
               

               
Cow position:
               
chr11:38833893-38833227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 20
               

               
Conread position:
               
124-784
               

               
Cow position:
               
chr11:63391909-63391246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 102
               

               
Conread position:
               
148-624
               

               
Cow position:
               
chr11:22938287-22937825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
345, 82
               

               
Conread position:
               
151-787
               

               
Cow position:
               
chr11:81339797-81339154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 68
               

               
Conread position:
               
153-800
               

               
Cow position:
               
chr11:66730767-66731402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
230, 73
               

               
Conread position:
               
158-492
               

               
Cow position:
               
chr11:31754390-31754076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
158-629
               

               
Cow position:
               
chr11:27056950-27056488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
214, 69
               

               
Conread position:
               
158-629
               

               
Cow position:
               
chr11:56480959-56480501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
229, 68
               

               
Conread position:
               
159-453
               

               
Cow position:
               
chr11:11133245-11133537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
160-540
               

               
Cow position:
               
chr11:56651376-56651744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
166-492
               

               
Cow position:
               
chr11:37288387-37288706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
214, 53
               

               
Conread position:
               
171-781
               

               
Cow position:
               
chr11:35571952-35571350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
175, 24
               

               
Conread position:
               
205-764
               

               
Cow position:
               
chr11:9249586-9249014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
235-752
               

               
Cow position:
               
chr11:30121978-30121447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 291
               

               
Conread position:
               
248-411
               

               
Cow position:
               
chr11:57651927-57651770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 103
               

               
Conread position:
               
248-492
               

               
Cow position:
               
chr11:53309250-53309492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
108, 161
               

               
Conread position:
               
248-800
               

               
Cow position:
               
chr11:10092356-10092920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
249-377
               

               
Cow position:
               
chr11:11577892-11577764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-489
               

               
Cow position:
               
chr11:87170546-87170314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
249-498
               

               
Cow position:
               
chr11:8533756-8533997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 57
               

               
Conread position:
               
249-597
               

               
Cow position:
               
chr11:23248793-23248431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 200
               

               
Conread position:
               
249-617
               

               
Cow position:
               
chr11:60700852-60701207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
249-672
               

               
Cow position:
               
chr11:87136957-87137396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 109
               

               
Conread position:
               
249-752
               

               
Cow position:
               
chr11:45106529-45107054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
249-780
               

               
Cow position:
               
chr11:67446561-67446014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 93
               

               
Conread position:
               
249-781
               

               
Cow position:
               
chr11:30202006-30201463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 111
               

               
Conread position:
               
249-781
               

               
Cow position:
               
chr11:76372369-76371828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
249-784
               

               
Cow position:
               
chr11:57626494-57625945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
249-784
               

               
Cow position:
               
chr11:67452331-67452884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
249-800
               

               
Cow position:
               
chr11:9155496-9154942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 161
               

               
Conread position:
               
249-800
               

               
Cow position:
               
chr11:39805411-39805961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
251-801
               

               
Cow position:
               
chr11:12951471-12950901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
252-477
               

               
Cow position:
               
chr11:62419384-62419616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
121, 88
               

               
Conread position:
               
252-617
               

               
Cow position:
               
chr11:35894222-35893847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 87
               

               
Conread position:
               
253-479
               

               
Cow position:
               
chr11:46766640-46766871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 113
               

               
Conread position:
               
253-689
               

               
Cow position:
               
chr11:33043156-33042728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
262-410
               

               
Cow position:
               
chr11:34018610-34018760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 98
               

               
Conread position:
               
262-472
               

               
Cow position:
               
chr11:32057460-32057660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
262-670
               

               
Cow position:
               
chr11:27936829-27937244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
263-731
               

               
Cow position:
               
chr11:5482919-5483398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 148
               

               
Conread position:
               
263-767
               

               
Cow position:
               
chr11:60823510-60824020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
107, 150
               

               
Conread position:
               
266-482
               

               
Cow position:
               
chr11:79087520-79087733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 144
               

               
Conread position:
               
266-790
               

               
Cow position:
               
chr11:75391948-75392488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 144
               

               
Conread position:
               
267-623
               

               
Cow position:
               
chr11:21881053-21880682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 93
               

               
Conread position:
               
269-443
               

               
Cow position:
               
chr11:84961933-84962105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
269-784
               

               
Cow position:
               
chr11:40328176-40327655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
288-499
               

               
Cow position:
               
chr11:23125320-23125114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
291-664
               

               
Cow position:
               
chr11:18127634-18127257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 145
               

               
Conread position:
               
298-784
               

               
Cow position:
               
chr11:84965845-84966347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
299-784
               

               
Cow position:
               
chr11:20806084-20805592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
304-529
               

               
Cow position:
               
chr11:3856898-3857120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
304-726
               

               
Cow position:
               
chr11:78672118-78671680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
305-671
               

               
Cow position:
               
chr11:20422867-20423219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
307-800
               

               
Cow position:
               
chr11:261943-261461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
309-498
               

               
Cow position:
               
chr11:30670778-30670967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
314-639
               

               
Cow position:
               
chr11:1493986-1493653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 97
               

               
Conread position:
               
317-800
               

               
Cow position:
               
chr11:73467679-73467170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 100
               

               
Conread position:
               
333-784
               

               
Cow position:
               
chr11:2349705-2350182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
341-784
               

               
Cow position:
               
chr11:38575712-38575253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
341-784
               

               
Cow position:
               
chr11:67864500-67864044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
367-698
               

               
Cow position:
               
chr11:56918189-56917845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
372-790
               

               
Cow position:
               
chr11:78792262-78791829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
378-751
               

               
Cow position:
               
chr11:60339381-60339765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
383-753
               

               
Cow position:
               
chr11:9223506-9223120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
412-787
               

               
Cow position:
               
chr11:37294233-37293844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
413-800
               

               
Cow position:
               
chr11:10849963-10850366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
415-800
               

               
Cow position:
               
chr11:44581386-44580984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
497-790
               

               
Cow position:
               
chr11:41744495-41744796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 53
               

               
Conread position:
               
497-800
               

               
Cow position:
               
chr11:7228191-7228499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
497-800
               

               
Cow position:
               
chr11:26549437-26549746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
141, 33
               

               
Conread position:
               
550-784
               

               
Cow position:
               
chr11:25183032-25183268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
550-796
               

               
Cow position:
               
chr11:15994151-15994404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 199
               
Show alignments to all cow chromosomes.