Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 43-410 |
| Cow position: | chr12:756959-757304 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 46-472 |
| Cow position: | chr12:25098687-25098280 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 73 |
| Conread position: | 46-672 |
| Cow position: | chr12:14660561-14659950 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 66 |
| Conread position: | 52-796 |
| Cow position: | chr12:3209765-3210513 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 504 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 316, 71 |
| Conread position: | 53-785 |
| Cow position: | chr12:8676291-8675560 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 73 |
| Conread position: | 53-800 |
| Cow position: | chr12:30685530-30686274 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 116 |
| Conread position: | 54-224 |
| Cow position: | chr12:23139375-23139210 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-227 |
| Cow position: | chr12:2283490-2283662 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 54-345 |
| Cow position: | chr12:21429808-21430081 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-406 |
| Cow position: | chr12:25267612-25267276 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-481 |
| Cow position: | chr12:27931108-27930700 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 23 |
| Conread position: | 54-492 |
| Cow position: | chr12:22203912-22203498 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 56 |
| Conread position: | 54-492 |
| Cow position: | chr12:22519181-22518767 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 66 |
| Conread position: | 54-493 |
| Cow position: | chr12:42606451-42606031 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-508 |
| Cow position: | chr12:21427793-21427357 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-726 |
| Cow position: | chr12:15950008-15949347 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 56 |
| Conread position: | 54-784 |
| Cow position: | chr12:11100034-11100761 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 54-784 |
| Cow position: | chr12:32655350-32656068 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 24 |
| Conread position: | 54-784 |
| Cow position: | chr12:34175143-34175870 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-784 |
| Cow position: | chr12:37560803-37561521 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-790 |
| Cow position: | chr12:3362732-3363464 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-800 |
| Cow position: | chr12:27854165-27853418 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 65 |
| Conread position: | 54-800 |
| Cow position: | chr12:42857735-42856997 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 61 |
| Conread position: | 55-451 |
| Cow position: | chr12:19870681-19871070 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 56-794 |
| Cow position: | chr12:23101265-23100527 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 65 |
| Conread position: | 56-800 |
| Cow position: | chr12:21128835-21129567 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 62 |
| Conread position: | 59-796 |
| Cow position: | chr12:29445528-29446248 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 73 |
| Conread position: | 61-474 |
| Cow position: | chr12:6404832-6404440 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 55 |
| Conread position: | 61-671 |
| Cow position: | chr12:20996294-20995696 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 58 |
| Conread position: | 61-784 |
| Cow position: | chr12:21210471-21211188 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 59 |
| Conread position: | 61-784 |
| Cow position: | chr12:25261713-25260999 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 58 |
| Conread position: | 61-800 |
| Cow position: | chr12:20461426-20460692 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 58 |
| Conread position: | 63-461 |
| Cow position: | chr12:486630-487023 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 63-674 |
| Cow position: | chr12:20844686-20845312 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 407 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 65-800 |
| Cow position: | chr12:23161102-23160365 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 483 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 286, 56 |
| Conread position: | 66-784 |
| Cow position: | chr12:21252774-21252065 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 54 |
| Conread position: | 67-781 |
| Cow position: | chr12:43054652-43053973 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 462 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 328, 49 |
| Conread position: | 79-784 |
| Cow position: | chr12:17967627-17968304 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 463 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 297, 43 |
| Conread position: | 84-471 |
| Cow position: | chr12:33043203-33043568 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 38 |
| Conread position: | 84-790 |
| Cow position: | chr12:24994152-24993448 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 38 |
| Conread position: | 96-588 |
| Cow position: | chr12:6618933-6619413 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 99-764 |
| Cow position: | chr12:24031127-24030450 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 20 |
| Conread position: | 111-484 |
| Cow position: | chr12:23257898-23257543 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 25 |
| Conread position: | 116-482 |
| Cow position: | chr12:21200230-21200577 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 30 |
| Conread position: | 116-620 |
| Cow position: | chr12:25144110-25144591 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 256, 86 |
| Conread position: | 121-511 |
| Cow position: | chr12:25072232-25072604 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 121-800 |
| Cow position: | chr12:1406684-1407365 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 15 |
| Conread position: | 124-804 |
| Cow position: | chr12:8138084-8137432 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 435 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 129-800 |
| Cow position: | chr12:3179236-3179901 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 97 |
| Conread position: | 131-485 |
| Cow position: | chr12:21310373-21310045 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 295, 6 |
| Conread position: | 132-784 |
| Cow position: | chr12:21944004-21944632 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 5 |
| Conread position: | 137-717 |
| Cow position: | chr12:21091859-21091291 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 88 |
| Conread position: | 160-492 |
| Cow position: | chr12:39414185-39414499 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 190, 67 |
| Conread position: | 163-506 |
| Cow position: | chr12:5145601-5145930 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 57 |
| Conread position: | 166-717 |
| Cow position: | chr12:14214273-14213723 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 37 |
| Conread position: | 198-510 |
| Cow position: | chr12:35346439-35346760 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 226 |
| Conread position: | 241-753 |
| Cow position: | chr12:21224498-21223978 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 361 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 248-529 |
| Cow position: | chr12:19966103-19965825 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 153 |
| Conread position: | 249-410 |
| Cow position: | chr12:3050879-3050718 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-472 |
| Cow position: | chr12:7862856-7862638 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 81 |
| Conread position: | 249-702 |
| Cow position: | chr12:8844533-8844067 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 249-712 |
| Cow position: | chr12:31332353-31331885 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 161 |
| Conread position: | 249-781 |
| Cow position: | chr12:12294496-12295050 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 142 |
| Conread position: | 249-784 |
| Cow position: | chr12:22570814-22571360 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 161 |
| Conread position: | 249-795 |
| Cow position: | chr12:22565027-22565592 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 251-784 |
| Cow position: | chr12:12756190-12755642 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 90 |
| Conread position: | 252-492 |
| Cow position: | chr12:31197412-31197648 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 158 |
| Conread position: | 252-764 |
| Cow position: | chr12:28765052-28764537 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 347 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 142, 101 |
| Conread position: | 252-784 |
| Cow position: | chr12:2283982-2284517 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 125 |
| Conread position: | 252-800 |
| Cow position: | chr12:24432914-24432363 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 158 |
| Conread position: | 254-632 |
| Cow position: | chr12:22592710-22593099 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 169 |
| Conread position: | 261-529 |
| Cow position: | chr12:16818140-16818405 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 86 |
| Conread position: | 262-801 |
| Cow position: | chr12:41594020-41594581 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 377 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 284-492 |
| Cow position: | chr12:40772611-40772818 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 173 |
| Conread position: | 339-481 |
| Cow position: | chr12:1887317-1887172 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 346-800 |
| Cow position: | chr12:3718200-3717741 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 379-764 |
| Cow position: | chr12:24979783-24980178 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 412-790 |
| Cow position: | chr12:33926397-33926000 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 421-784 |
| Cow position: | chr12:21200879-21201261 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 353 |
| Conread position: | 430-784 |
| Cow position: | chr12:1404416-1404785 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 347 |
| Conread position: | 436-780 |
| Cow position: | chr12:757609-757962 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 102 |
| Conread position: | 436-784 |
| Cow position: | chr12:251688-251326 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 501-753 |
| Cow position: | chr12:27930528-27930270 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 501-800 |
| Cow position: | chr12:18467017-18467322 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 48 |
Show alignments to all cow chromosomes.