Cow genome map

Conread name: Ss1.1-Thy1-THY010064A03.5

Conread position: 1-426
Cow position:
Alignm length: 434
Alignm identity: 273
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 61

Conread position: 1-508
Cow position:
Alignm length: 511
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 7

Conread position: 6-624
Cow position:
Alignm length: 637
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 58

Conread position: 39-764
Cow position:
Alignm length: 747
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 83

Conread position: 40-507
Cow position:
Alignm length: 474
Alignm identity: 313
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 210, 82

Conread position: 46-413
Cow position:
Alignm length: 371
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 151, 19

Conread position: 51-492
Cow position:
Alignm length: 443
Alignm identity: 286
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 53

Conread position: 53-623
Cow position:
Alignm length: 588
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 79

Conread position: 53-723
Cow position:
Alignm length: 696
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 26

Conread position: 53-784
Cow position:
Alignm length: 756
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 53-800
Cow position:
Alignm length: 770
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 66

Conread position: 54-224
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 54-224
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 54-237
Cow position:
Alignm length: 184
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 54-237
Cow position:
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 54-237
Cow position:
Alignm length: 184
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 54-315
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 54-324
Cow position:
Alignm length: 271
Alignm identity: 183
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 54-393
Cow position:
Alignm length: 340
Alignm identity: 237
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 54-451
Cow position:
Alignm length: 401
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-508
Cow position:
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-670
Cow position:
Alignm length: 636
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 68

Conread position: 54-698
Cow position:
Alignm length: 671
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 47

Conread position: 54-717
Cow position:
Alignm length: 683
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 69

Conread position: 54-724
Cow position:
Alignm length: 688
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 65

Conread position: 54-748
Cow position:
Alignm length: 710
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 18

Conread position: 54-779
Cow position:
Alignm length: 755
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 64

Conread position: 54-781
Cow position:
Alignm length: 753
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 751
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 34

Conread position: 54-784
Cow position:
Alignm length: 762
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 68

Conread position: 54-784
Cow position:
Alignm length: 757
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 754
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 42

Conread position: 54-784
Cow position:
Alignm length: 754
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 63

Conread position: 54-784
Cow position:
Alignm length: 753
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 44

Conread position: 54-784
Cow position:
Alignm length: 757
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 66

Conread position: 54-784
Cow position:
Alignm length: 768
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 62

Conread position: 54-790
Cow position:
Alignm length: 760
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 68

Conread position: 54-800
Cow position:
Alignm length: 771
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 772
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 59

Conread position: 54-800
Cow position:
Alignm length: 772
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 768
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 64

Conread position: 54-800
Cow position:
Alignm length: 768
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 65

Conread position: 54-800
Cow position:
Alignm length: 775
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 65

Conread position: 54-800
Cow position:
Alignm length: 763
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 47

Conread position: 54-801
Cow position:
Alignm length: 770
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 55-785
Cow position:
Alignm length: 758
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 174

Conread position: 56-376
Cow position:
Alignm length: 323
Alignm identity: 210
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 174, 66

Conread position: 56-510
Cow position:
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 63

Conread position: 59-409
Cow position:
Alignm length: 353
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 63

Conread position: 59-768
Cow position:
Alignm length: 713
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 20

Conread position: 60-671
Cow position:
Alignm length: 625
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 62

Conread position: 60-750
Cow position:
Alignm length: 711
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 62

Conread position: 61-201
Cow position:
Alignm length: 141
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 61-474
Cow position:
Alignm length: 416
Alignm identity: 285
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 338, 75

Conread position: 61-712
Cow position:
Alignm length: 669
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 36

Conread position: 61-721
Cow position:
Alignm length: 677
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 65

Conread position: 61-767
Cow position:
Alignm length: 735
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 59

Conread position: 61-800
Cow position:
Alignm length: 766
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 58

Conread position: 61-800
Cow position:
Alignm length: 769
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 58

Conread position: 62-443
Cow position:
Alignm length: 389
Alignm identity: 270
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 310, 70

Conread position: 62-447
Cow position:
Alignm length: 386
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 62-800
Cow position:
Alignm length: 759
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 63

Conread position: 64-691
Cow position:
Alignm length: 647
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 60

Conread position: 64-800
Cow position:
Alignm length: 760
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 56

Conread position: 65-212
Cow position:
Alignm length: 151
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 65-784
Cow position:
Alignm length: 731
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 21

Conread position: 66-753
Cow position:
Alignm length: 713
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 60

Conread position: 68-800
Cow position:
Alignm length: 766
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 47

Conread position: 72-784
Cow position:
Alignm length: 738
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 48

Conread position: 83-416
Cow position:
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 37

Conread position: 84-800
Cow position:
Alignm length: 743
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 38

Conread position: 85-438
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 341, 37

Conread position: 96-779
Cow position:
Alignm length: 699
Alignm identity: 434
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 278, 20

Conread position: 104-709
Cow position:
Alignm length: 636
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 106-784
Cow position:
Alignm length: 696
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 120

Conread position: 117-784
Cow position:
Alignm length: 701
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 106

Conread position: 119-472
Cow position:
Alignm length: 359
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 18

Conread position: 119-784
Cow position:
Alignm length: 689
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 107

Conread position: 125-800
Cow position:
Alignm length: 705
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 11

Conread position: 128-793
Cow position:
Alignm length: 693
Alignm identity: 433
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 55

Conread position: 129-485
Cow position:
Alignm length: 368
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 143, 90

Conread position: 130-753
Cow position:
Alignm length: 646
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 96

Conread position: 131-510
Cow position:
Alignm length: 393
Alignm identity: 255
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 119, 6

Conread position: 136-675
Cow position:
Alignm length: 550
Alignm identity: 344
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 355, 90

Conread position: 145-449
Cow position:
Alignm length: 307
Alignm identity: 219
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 227, 5

Conread position: 148-614
Cow position:
Alignm length: 470
Alignm identity: 308
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 224, 78

Conread position: 149-410
Cow position:
Alignm length: 264
Alignm identity: 192
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 223, 77

Conread position: 150-480
Cow position:
Alignm length: 335
Alignm identity: 220
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 100, 32

Conread position: 158-497
Cow position:
Alignm length: 346
Alignm identity: 241
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 158, 67

Conread position: 166-800
Cow position:
Alignm length: 671
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 54

Conread position: 182-784
Cow position:
Alignm length: 631
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 23

Conread position: 185-784
Cow position:
Alignm length: 624
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 45

Conread position: 247-730
Cow position:
Alignm length: 498
Alignm identity: 317
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 30

Conread position: 249-438
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 90

Conread position: 249-472
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 123, 93

Conread position: 249-621
Cow position:
Alignm length: 385
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 123, 70

Conread position: 249-623
Cow position:
Alignm length: 388
Alignm identity: 257
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 121, 92

Conread position: 249-714
Cow position:
Alignm length: 490
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 168

Conread position: 249-763
Cow position:
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 161

Conread position: 249-784
Cow position:
Alignm length: 562
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 161

Conread position: 249-793
Cow position:
Alignm length: 569
Alignm identity: 365
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 90, 155

Conread position: 249-800
Cow position:
Alignm length: 574
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 167

Conread position: 249-800
Cow position:
Alignm length: 568
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 85

Conread position: 252-411
Cow position:
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 253-751
Cow position:
Alignm length: 526
Alignm identity: 334
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 155

Conread position: 254-657
Cow position:
Alignm length: 412
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 155

Conread position: 254-790
Cow position:
Alignm length: 561
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 48

Conread position: 263-800
Cow position:
Alignm length: 564
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 147

Conread position: 263-804
Cow position:
Alignm length: 562
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 149

Conread position: 273-753
Cow position:
Alignm length: 505
Alignm identity: 300
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 82, 86

Conread position: 285-462
Cow position:
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 98

Conread position: 297-764
Cow position:
Alignm length: 503
Alignm identity: 331
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 7, 14

Conread position: 298-754
Cow position:
Alignm length: 482
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 39

Conread position: 300-784
Cow position:
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 116

Conread position: 302-712
Cow position:
Alignm length: 422
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 107

Conread position: 304-649
Cow position:
Alignm length: 359
Alignm identity: 236
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 170, 24

Conread position: 304-672
Cow position:
Alignm length: 384
Alignm identity: 246
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 312-597
Cow position:
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 93

Conread position: 312-800
Cow position:
Alignm length: 513
Alignm identity: 347
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 60, 80

Conread position: 322-753
Cow position:
Alignm length: 453
Alignm identity: 301
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 93

Conread position: 326-790
Cow position:
Alignm length: 489
Alignm identity: 324
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 84

Conread position: 327-472
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 100

Conread position: 340-800
Cow position:
Alignm length: 487
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 89

Conread position: 341-784
Cow position:
Alignm length: 468
Alignm identity: 295
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 76

Conread position: 361-509
Cow position:
Alignm length: 156
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 13, 30

Conread position: 374-684
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 21, 51

Conread position: 387-800
Cow position:
Alignm length: 433
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 405-790
Cow position:
Alignm length: 402
Alignm identity: 252
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 14

Conread position: 407-800
Cow position:
Alignm length: 417
Alignm identity: 280
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 23, 14

Conread position: 427-784
Cow position:
Alignm length: 372
Alignm identity: 245
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 59, 306

Conread position: 501-796
Cow position:
Alignm length: 311
Alignm identity: 207
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 30

Conread position: 516-766
Cow position:
Alignm length: 256
Alignm identity: 171
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 14

Conread position: 534-796
Cow position:
Alignm length: 275
Alignm identity: 188
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 75

Conread position: 535-717
Cow position:
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 535-800
Cow position:
Alignm length: 273
Alignm identity: 184
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 191

Conread position: 554-800
Cow position:
Alignm length: 257
Alignm identity: 180
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 71, 153

Conread position: 566-800
Cow position:
Alignm length: 246
Alignm identity: 167
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 65, 205

Show alignments to all cow chromosomes.