Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 41-800 |
| Cow position: | |
| Alignm length: | 785 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 46-411 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 73 |
| Conread position: | 46-719 |
| Cow position: | |
| Alignm length: | 689 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 53-492 |
| Cow position: | |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 319, 64 |
| Conread position: | 53-637 |
| Cow position: | |
| Alignm length: | 591 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 68 |
| Conread position: | 53-715 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 66 |
| Conread position: | 53-753 |
| Cow position: | |
| Alignm length: | 724 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 74 |
| Conread position: | 54-235 |
| Cow position: | |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 54-237 |
| Cow position: | |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 54-375 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-484 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 319, 53 |
| Conread position: | 54-510 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 154 |
| Conread position: | 54-510 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-623 |
| Cow position: | |
| Alignm length: | 581 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 321, 16 |
| Conread position: | 54-691 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-717 |
| Cow position: | |
| Alignm length: | 697 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 66 |
| Conread position: | 54-717 |
| Cow position: | |
| Alignm length: | 685 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 67 |
| Conread position: | 54-752 |
| Cow position: | |
| Alignm length: | 724 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 741 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 174 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 748 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 68 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 744 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 63 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 751 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 757 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-790 |
| Cow position: | |
| Alignm length: | 759 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 762 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 95 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 771 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 771 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-802 |
| Cow position: | |
| Alignm length: | 773 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 65 |
| Conread position: | 54-804 |
| Cow position: | |
| Alignm length: | 802 |
| Alignm identity: | 509 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 196, 65 |
| Conread position: | 54-804 |
| Cow position: | |
| Alignm length: | 777 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 65 |
| Conread position: | 55-800 |
| Cow position: | |
| Alignm length: | 773 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 55 |
| Conread position: | 56-796 |
| Cow position: | |
| Alignm length: | 759 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 61 |
| Conread position: | 59-667 |
| Cow position: | |
| Alignm length: | 623 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 29 |
| Conread position: | 61-246 |
| Cow position: | |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 61-692 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 61 |
| Conread position: | 61-784 |
| Cow position: | |
| Alignm length: | 747 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 72 |
| Conread position: | 61-784 |
| Cow position: | |
| Alignm length: | 747 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 61 |
| Conread position: | 61-784 |
| Cow position: | |
| Alignm length: | 748 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 56 |
| Conread position: | 61-787 |
| Cow position: | |
| Alignm length: | 754 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 58 |
| Conread position: | 62-235 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 62-790 |
| Cow position: | |
| Alignm length: | 762 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 172 |
| Conread position: | 62-798 |
| Cow position: | |
| Alignm length: | 759 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 54 |
| Conread position: | 63-468 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 56 |
| Conread position: | 65-237 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 65-493 |
| Cow position: | |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 307, 31 |
| Conread position: | 66-798 |
| Cow position: | |
| Alignm length: | 759 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 56 |
| Conread position: | 67-491 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 305, 53 |
| Conread position: | 67-745 |
| Cow position: | |
| Alignm length: | 710 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 40 |
| Conread position: | 72-499 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 111 |
| Conread position: | 73-354 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 88-784 |
| Cow position: | |
| Alignm length: | 722 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 28 |
| Conread position: | 91-787 |
| Cow position: | |
| Alignm length: | 722 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 5 |
| Conread position: | 93-800 |
| Cow position: | |
| Alignm length: | 736 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 26 |
| Conread position: | 96-784 |
| Cow position: | |
| Alignm length: | 718 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 20 |
| Conread position: | 116-764 |
| Cow position: | |
| Alignm length: | 672 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 20 |
| Conread position: | 123-796 |
| Cow position: | |
| Alignm length: | 702 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 102 |
| Conread position: | 124-510 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 251, 68 |
| Conread position: | 124-796 |
| Cow position: | |
| Alignm length: | 686 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 102 |
| Conread position: | 128-784 |
| Cow position: | |
| Alignm length: | 673 |
| Alignm identity: | 415 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 132-453 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 218, 94 |
| Conread position: | 132-790 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 420 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 186, 94 |
| Conread position: | 148-620 |
| Cow position: | |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 150-510 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 331, 56 |
| Conread position: | 155-782 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 421 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 172-510 |
| Cow position: | |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 200, 54 |
| Conread position: | 174-800 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 40 |
| Conread position: | 198-784 |
| Cow position: | |
| Alignm length: | 608 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 28 |
| Conread position: | 237-614 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 7, 175 |
| Conread position: | 249-406 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 249-452 |
| Cow position: | |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 125, 161 |
| Conread position: | 249-532 |
| Cow position: | |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 146, 89 |
| Conread position: | 249-615 |
| Cow position: | |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 249-655 |
| Cow position: | |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 310 |
| Conread position: | 249-670 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 249-710 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 170 |
| Conread position: | 249-784 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 288, 128 |
| Conread position: | 252-411 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 82 |
| Conread position: | 262-492 |
| Cow position: | |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 284-764 |
| Cow position: | |
| Alignm length: | 500 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 64 |
| Conread position: | 288-670 |
| Cow position: | |
| Alignm length: | 399 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 64 |
| Conread position: | 297-508 |
| Cow position: | |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 113 |
| Conread position: | 304-617 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 305-790 |
| Cow position: | |
| Alignm length: | 510 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 105 |
| Conread position: | 306-629 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 123 |
| Conread position: | 322-755 |
| Cow position: | |
| Alignm length: | 450 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 370-779 |
| Cow position: | |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 373-780 |
| Cow position: | |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 180 |
| Conread position: | 412-800 |
| Cow position: | |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 420-800 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 501-801 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 125, 38 |
Show alignments to all cow chromosomes.