Cow genome map

Conread name: Ss1.1-Thy1-THY010064A03.5

Conread position: 41-800
Cow position: chr19:3089433-3088685 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 46-411
Cow position: chr19:5730730-5731079 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 73

Conread position: 46-719
Cow position: chr19:16129256-16129914 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 5

Conread position: 53-492
Cow position: chr19:33595894-33595481 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 296
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 319, 64

Conread position: 53-637
Cow position: chr19:174156-174719 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 68

Conread position: 53-715
Cow position: chr19:33639985-33640635 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 66

Conread position: 53-753
Cow position: chr19:437446-436746 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 74

Conread position: 54-235
Cow position: chr19:28796314-28796139 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 54-237
Cow position: chr19:891741-891564 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 54-375
Cow position: chr19:7343965-7344264 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 54-484
Cow position: chr19:3175263-3175660 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 289
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 319, 53

Conread position: 54-510
Cow position: chr19:30453461-30453023 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 154

Conread position: 54-510
Cow position: chr19:52149784-52149346 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-623
Cow position: chr19:4302168-4302711 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 377
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 321, 16

Conread position: 54-691
Cow position: chr19:20106624-20107253 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-717
Cow position: chr19:774502-775173 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 66

Conread position: 54-717
Cow position: chr19:2272222-2271566 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 67

Conread position: 54-752
Cow position: chr19:166232-165533 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 25

Conread position: 54-784
Cow position: chr19:40246-40954 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 174

Conread position: 54-784
Cow position: chr19:1587339-1586634 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 68

Conread position: 54-784
Cow position: chr19:4387498-4388201 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 63

Conread position: 54-784
Cow position: chr19:15445966-15445244 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position: chr19:33875309-33876036 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-790
Cow position: chr19:22511877-22511149 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-800
Cow position: chr19:27035757-27035028 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 95

Conread position: 54-800
Cow position: chr19:39183646-39182902 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position: chr19:39392407-39393148 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-802
Cow position: chr19:21338949-21338204 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 65

Conread position: 54-804
Cow position: chr19:375825-375046 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 509
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 196, 65

Conread position: 54-804
Cow position: chr19:33943465-33944210 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 65

Conread position: 55-800
Cow position: chr19:39666652-39665914 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 55

Conread position: 56-796
Cow position: chr19:30560085-30560799 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 61

Conread position: 59-667
Cow position: chr19:343151-343743 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 29

Conread position: 61-246
Cow position: chr19:48859855-48859680 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 61-692
Cow position: chr19:5899605-5898981 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 61

Conread position: 61-784
Cow position: chr19:5782610-5781897 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 72

Conread position: 61-784
Cow position: chr19:40835364-40834643 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 61

Conread position: 61-784
Cow position: chr19:40885837-40885125 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 56

Conread position: 61-787
Cow position: chr19:5248884-5248161 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 58

Conread position: 62-235
Cow position: chr19:36417926-36418095 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 116, 58

Conread position: 62-790
Cow position: chr19:43146563-43147301 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 172

Conread position: 62-798
Cow position: chr19:9706272-9705550 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 54

Conread position: 63-468
Cow position: chr19:1584161-1584547 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 56

Conread position: 65-237
Cow position: chr19:1489163-1488995 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 65-493
Cow position: chr19:1660583-1660987 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 291
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 307, 31

Conread position: 66-798
Cow position: chr19:257219-257945 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 56

Conread position: 67-491
Cow position: chr19:10508544-10508147 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 305, 53

Conread position: 67-745
Cow position: chr19:33904972-33905650 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 40

Conread position: 72-499
Cow position: chr19:265563-265971 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 111

Conread position: 73-354
Cow position: chr19:51068825-51068562 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 49, 0

Conread position: 88-784
Cow position: chr19:7490027-7490719 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 28

Conread position: 91-787
Cow position: chr19:16318679-16317985 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 5

Conread position: 93-800
Cow position: chr19:206436-207141 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 26

Conread position: 96-784
Cow position: chr19:12775057-12775744 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 20

Conread position: 116-764
Cow position: chr19:40850527-40849886 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 20

Conread position: 123-796
Cow position: chr19:42582322-42581649 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 102

Conread position: 124-510
Cow position: chr19:26543863-26544235 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 252
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 251, 68

Conread position: 124-796
Cow position: chr19:28579712-28579067 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 102

Conread position: 128-784
Cow position: chr19:23075851-23076487 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 415
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 51, 9

Conread position: 132-453
Cow position: chr19:36187562-36187868 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 218, 94

Conread position: 132-790
Cow position: chr19:28718488-28719141 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 420
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 186, 94

Conread position: 148-620
Cow position: chr19:36148625-36149094 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 318
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 79

Conread position: 150-510
Cow position: chr19:28328403-28328737 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 331, 56

Conread position: 155-782
Cow position: chr19:28404571-28403951 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 421
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 57, 76

Conread position: 172-510
Cow position: chr19:8514059-8513724 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 200, 54

Conread position: 174-800
Cow position: chr19:35383138-35382517 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 40

Conread position: 198-784
Cow position: chr19:7481912-7481316 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 28

Conread position: 237-614
Cow position: chr19:190627-191011 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 7, 175

Conread position: 249-406
Cow position: chr19:14212251-14212093 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 34

Conread position: 249-452
Cow position: chr19:40805765-40805964 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 125, 161

Conread position: 249-532
Cow position: chr19:336765-336480 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 146, 89

Conread position: 249-615
Cow position: chr19:134485-134122 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 131, 25

Conread position: 249-655
Cow position: chr19:789662-790096 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 290
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 310

Conread position: 249-670
Cow position: chr19:891162-890733 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 34

Conread position: 249-710
Cow position: chr19:28789939-28789474 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 305
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 96, 170

Conread position: 249-784
Cow position: chr19:34657425-34656908 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 342
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 288, 128

Conread position: 252-411
Cow position: chr19:42723497-42723657 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 95, 82

Conread position: 262-492
Cow position: chr19:12677490-12677264 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 14

Conread position: 284-764
Cow position: chr19:5717517-5717041 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 111, 64

Conread position: 288-670
Cow position: chr19:13459953-13459560 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 251
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 64

Conread position: 297-508
Cow position: chr19:3015018-3014807 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 77, 113

Conread position: 304-617
Cow position: chr19:43949242-43948922 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 213
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 48

Conread position: 305-790
Cow position: chr19:20610458-20610959 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 105

Conread position: 306-629
Cow position: chr19:1488991-1488663 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 123

Conread position: 322-755
Cow position: chr19:42305514-42305078 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 281
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 34, 86

Conread position: 370-779
Cow position: chr19:5731700-5732121 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 275
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 13

Conread position: 373-780
Cow position: chr19:3141814-3142249 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 285
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 180

Conread position: 412-800
Cow position: chr19:33649961-33649549 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 142

Conread position: 420-800
Cow position: chr19:42297871-42297488 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 254
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 97, 10

Conread position: 501-801
Cow position: chr19:24727346-24727042 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 125, 38

Show alignments to all cow chromosomes.