Cow genome map

Conread name: Ss1.1-Thy1-THY010064A03.5

Conread position: 41-443
Cow position:
Alignm length: 405
Alignm identity: 274
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 336, 49

Conread position: 46-801
Cow position:
Alignm length: 793
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 179

Conread position: 52-784
Cow position:
Alignm length: 761
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 70

Conread position: 53-224
Cow position:
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 101

Conread position: 53-672
Cow position:
Alignm length: 638
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 66

Conread position: 54-246
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 54-335
Cow position:
Alignm length: 282
Alignm identity: 196
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 0

Conread position: 54-345
Cow position:
Alignm length: 293
Alignm identity: 193
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 7, 69

Conread position: 54-353
Cow position:
Alignm length: 300
Alignm identity: 214
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 54-365
Cow position:
Alignm length: 312
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 44, 0

Conread position: 54-406
Cow position:
Alignm length: 354
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 69

Conread position: 54-408
Cow position:
Alignm length: 357
Alignm identity: 250
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 318, 56

Conread position: 54-462
Cow position:
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 172

Conread position: 54-479
Cow position:
Alignm length: 434
Alignm identity: 289
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 47

Conread position: 54-510
Cow position:
Alignm length: 471
Alignm identity: 304
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 43

Conread position: 54-510
Cow position:
Alignm length: 464
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 68

Conread position: 54-609
Cow position:
Alignm length: 572
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 42

Conread position: 54-647
Cow position:
Alignm length: 608
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 65

Conread position: 54-655
Cow position:
Alignm length: 623
Alignm identity: 412
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 288, 16

Conread position: 54-661
Cow position:
Alignm length: 628
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 42

Conread position: 54-671
Cow position:
Alignm length: 636
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 65

Conread position: 54-675
Cow position:
Alignm length: 636
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 65

Conread position: 54-689
Cow position:
Alignm length: 658
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 62

Conread position: 54-706
Cow position:
Alignm length: 670
Alignm identity: 437
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 318, 68

Conread position: 54-781
Cow position:
Alignm length: 752
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-781
Cow position:
Alignm length: 756
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 749
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 751
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 65

Conread position: 54-784
Cow position:
Alignm length: 757
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 57

Conread position: 54-784
Cow position:
Alignm length: 755
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 755
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 65

Conread position: 54-784
Cow position:
Alignm length: 754
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 68

Conread position: 54-784
Cow position:
Alignm length: 748
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 753
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 68

Conread position: 54-800
Cow position:
Alignm length: 775
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 64

Conread position: 54-800
Cow position:
Alignm length: 770
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 768
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 65

Conread position: 54-800
Cow position:
Alignm length: 769
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 65

Conread position: 54-804
Cow position:
Alignm length: 773
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 61

Conread position: 55-689
Cow position:
Alignm length: 657
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 10

Conread position: 56-443
Cow position:
Alignm length: 394
Alignm identity: 266
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 80, 8

Conread position: 56-667
Cow position:
Alignm length: 634
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 170

Conread position: 56-790
Cow position:
Alignm length: 749
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 65

Conread position: 60-800
Cow position:
Alignm length: 764
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 59

Conread position: 61-236
Cow position:
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 61-437
Cow position:
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 20

Conread position: 61-671
Cow position:
Alignm length: 632
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 61

Conread position: 61-746
Cow position:
Alignm length: 702
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 58

Conread position: 61-755
Cow position:
Alignm length: 721
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 61

Conread position: 61-764
Cow position:
Alignm length: 725
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 58

Conread position: 61-784
Cow position:
Alignm length: 751
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 49

Conread position: 61-784
Cow position:
Alignm length: 751
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 59

Conread position: 61-784
Cow position:
Alignm length: 753
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 166

Conread position: 61-800
Cow position:
Alignm length: 763
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 165

Conread position: 61-800
Cow position:
Alignm length: 757
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 61

Conread position: 61-800
Cow position:
Alignm length: 762
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 58

Conread position: 62-388
Cow position:
Alignm length: 341
Alignm identity: 234
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 49, 177

Conread position: 62-614
Cow position:
Alignm length: 554
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 58

Conread position: 62-790
Cow position:
Alignm length: 757
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 169

Conread position: 62-800
Cow position:
Alignm length: 754
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 64-403
Cow position:
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 55

Conread position: 64-621
Cow position:
Alignm length: 571
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 7

Conread position: 66-671
Cow position:
Alignm length: 622
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 56

Conread position: 67-787
Cow position:
Alignm length: 749
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 29

Conread position: 68-393
Cow position:
Alignm length: 327
Alignm identity: 224
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 315, 49

Conread position: 73-493
Cow position:
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 56

Conread position: 74-411
Cow position:
Alignm length: 341
Alignm identity: 237
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 130, 49

Conread position: 79-482
Cow position:
Alignm length: 412
Alignm identity: 273
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 43, 147

Conread position: 81-652
Cow position:
Alignm length: 589
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 41

Conread position: 88-801
Cow position:
Alignm length: 748
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 32

Conread position: 91-667
Cow position:
Alignm length: 607
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Conread position: 92-590
Cow position:
Alignm length: 516
Alignm identity: 343
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 289, 19

Conread position: 123-648
Cow position:
Alignm length: 548
Alignm identity: 359
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 12, 105

Conread position: 123-764
Cow position:
Alignm length: 678
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 103

Conread position: 124-800
Cow position:
Alignm length: 688
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 25

Conread position: 125-669
Cow position:
Alignm length: 566
Alignm identity: 352
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 39

Conread position: 129-610
Cow position:
Alignm length: 497
Alignm identity: 319
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 177, 19

Conread position: 129-800
Cow position:
Alignm length: 689
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 91

Conread position: 130-507
Cow position:
Alignm length: 383
Alignm identity: 264
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 64, 97

Conread position: 131-467
Cow position:
Alignm length: 344
Alignm identity: 239
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 241, 48

Conread position: 136-484
Cow position:
Alignm length: 354
Alignm identity: 232
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 238, 12

Conread position: 136-800
Cow position:
Alignm length: 695
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 89

Conread position: 137-784
Cow position:
Alignm length: 674
Alignm identity: 430
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 242, 89

Conread position: 137-800
Cow position:
Alignm length: 692
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 89

Conread position: 138-784
Cow position:
Alignm length: 670
Alignm identity: 434
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 234, 22

Conread position: 146-616
Cow position:
Alignm length: 476
Alignm identity: 304
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 226, 13

Conread position: 148-784
Cow position:
Alignm length: 663
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 78

Conread position: 152-376
Cow position:
Alignm length: 225
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 154-752
Cow position:
Alignm length: 634
Alignm identity: 409
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 126, 66

Conread position: 158-790
Cow position:
Alignm length: 650
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 45

Conread position: 160-779
Cow position:
Alignm length: 659
Alignm identity: 423
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 83, 66

Conread position: 162-756
Cow position:
Alignm length: 632
Alignm identity: 409
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 12, 73

Conread position: 163-800
Cow position:
Alignm length: 661
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 41

Conread position: 166-452
Cow position:
Alignm length: 289
Alignm identity: 191
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 189, 60

Conread position: 168-472
Cow position:
Alignm length: 309
Alignm identity: 210
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 174, 47

Conread position: 172-790
Cow position:
Alignm length: 650
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 54

Conread position: 182-781
Cow position:
Alignm length: 631
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 242-510
Cow position:
Alignm length: 275
Alignm identity: 191
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 166

Conread position: 249-629
Cow position:
Alignm length: 394
Alignm identity: 260
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 123, 147

Conread position: 249-664
Cow position:
Alignm length: 429
Alignm identity: 285
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 123, 93

Conread position: 252-529
Cow position:
Alignm length: 286
Alignm identity: 194
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 120, 22

Conread position: 252-800
Cow position:
Alignm length: 570
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 293

Conread position: 254-790
Cow position:
Alignm length: 563
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 156

Conread position: 263-784
Cow position:
Alignm length: 548
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 96

Conread position: 263-784
Cow position:
Alignm length: 539
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 147

Conread position: 277-801
Cow position:
Alignm length: 552
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 276

Conread position: 281-804
Cow position:
Alignm length: 549
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 129

Conread position: 288-784
Cow position:
Alignm length: 524
Alignm identity: 346
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 68

Conread position: 298-671
Cow position:
Alignm length: 390
Alignm identity: 265
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 44, 126

Conread position: 300-790
Cow position:
Alignm length: 513
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 111

Conread position: 303-796
Cow position:
Alignm length: 513
Alignm identity: 322
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 10, 146

Conread position: 335-717
Cow position:
Alignm length: 406
Alignm identity: 272
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 81

Conread position: 340-780
Cow position:
Alignm length: 469
Alignm identity: 301
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 12, 19

Conread position: 353-755
Cow position:
Alignm length: 426
Alignm identity: 279
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 26

Conread position: 413-784
Cow position:
Alignm length: 394
Alignm identity: 261
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 79, 11

Conread position: 446-784
Cow position:
Alignm length: 360
Alignm identity: 240
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 104

Conread position: 497-800
Cow position:
Alignm length: 315
Alignm identity: 210
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 34

Conread position: 501-754
Cow position:
Alignm length: 257
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 156, 37

Conread position: 571-800
Cow position:
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 194

Show alignments to all cow chromosomes.