Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 50-623 |
| Cow position: | chr23:2342886-2343441 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 53-489 |
| Cow position: | chr23:16701022-16701452 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 54-236 |
| Cow position: | chr23:4818816-4818990 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 54-237 |
| Cow position: | chr23:964707-964529 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 54-237 |
| Cow position: | chr23:4638802-4638624 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 54-237 |
| Cow position: | chr23:7314706-7314884 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 54-354 |
| Cow position: | chr23:28219230-28219509 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-386 |
| Cow position: | chr23:21821533-21821219 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 54-401 |
| Cow position: | chr23:3418005-3418336 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-412 |
| Cow position: | chr23:15659983-15659653 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 54-508 |
| Cow position: | chr23:10874807-10874368 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 54-617 |
| Cow position: | chr23:1400413-1399884 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 52 |
| Conread position: | 54-620 |
| Cow position: | chr23:617683-617132 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 65 |
| Conread position: | 54-689 |
| Cow position: | chr23:31164597-31165247 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 65 |
| Conread position: | 54-704 |
| Cow position: | chr23:32350966-32350327 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-712 |
| Cow position: | chr23:28304711-28305374 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 65 |
| Conread position: | 54-753 |
| Cow position: | chr23:13512871-13513549 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 19 |
| Conread position: | 54-764 |
| Cow position: | chr23:22145510-22144806 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-779 |
| Cow position: | chr23:4890478-4891204 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 54-784 |
| Cow position: | chr23:1050738-1050009 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 65 |
| Conread position: | 54-784 |
| Cow position: | chr23:2025285-2024569 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-784 |
| Cow position: | chr23:5872776-5872048 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 72 |
| Conread position: | 54-784 |
| Cow position: | chr23:11714070-11713343 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 67 |
| Conread position: | 54-784 |
| Cow position: | chr23:38579467-38580175 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 68 |
| Conread position: | 54-790 |
| Cow position: | chr23:942757-943499 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 54-800 |
| Cow position: | chr23:2759694-2760431 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-800 |
| Cow position: | chr23:3879290-3878559 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-800 |
| Cow position: | chr23:4309376-4308645 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 17 |
| Conread position: | 54-800 |
| Cow position: | chr23:15178859-15179599 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-800 |
| Cow position: | chr23:15527376-15528118 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 54-800 |
| Cow position: | chr23:19491346-19492089 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-800 |
| Cow position: | chr23:30238066-30238795 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 48 |
| Conread position: | 55-321 |
| Cow position: | chr23:2577421-2577672 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 60-800 |
| Cow position: | chr23:16497452-16496737 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 60 |
| Conread position: | 61-484 |
| Cow position: | chr23:25677157-25676756 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 217, 50 |
| Conread position: | 61-688 |
| Cow position: | chr23:7357040-7357649 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 71 |
| Conread position: | 61-717 |
| Cow position: | chr23:17844685-17845332 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 49 |
| Conread position: | 61-784 |
| Cow position: | chr23:1339999-1339258 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 59 |
| Conread position: | 61-791 |
| Cow position: | chr23:608515-609254 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 59 |
| Conread position: | 61-799 |
| Cow position: | chr23:3708205-3708932 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 65 |
| Conread position: | 61-800 |
| Cow position: | chr23:1957963-1958694 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 55 |
| Conread position: | 61-800 |
| Cow position: | chr23:2439484-2438775 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 493 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 250, 55 |
| Conread position: | 61-800 |
| Cow position: | chr23:14961149-14960419 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 58 |
| Conread position: | 61-800 |
| Cow position: | chr23:14972152-14971416 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 27 |
| Conread position: | 61-800 |
| Cow position: | chr23:20154425-20153690 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 170 |
| Conread position: | 61-800 |
| Cow position: | chr23:36029580-36028849 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 61-800 |
| Cow position: | chr23:37200717-37199986 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 57 |
| Conread position: | 61-804 |
| Cow position: | chr23:4435456-4436193 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 55 |
| Conread position: | 62-784 |
| Cow position: | chr23:29443285-29442582 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 54 |
| Conread position: | 62-800 |
| Cow position: | chr23:11780595-11781327 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 19 |
| Conread position: | 62-803 |
| Cow position: | chr23:16612983-16612263 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 60 |
| Conread position: | 63-492 |
| Cow position: | chr23:18126437-18126034 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 68-510 |
| Cow position: | chr23:23283341-23283760 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 54 |
| Conread position: | 72-784 |
| Cow position: | chr23:16055587-16056260 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 50 |
| Conread position: | 84-494 |
| Cow position: | chr23:22369284-22368884 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 8 |
| Conread position: | 88-698 |
| Cow position: | chr23:34257178-34256573 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 412 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 116-784 |
| Cow position: | chr23:1011983-1011317 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 20 |
| Conread position: | 120-800 |
| Cow position: | chr23:2411782-2411105 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 153-784 |
| Cow position: | chr23:8289288-8289937 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 72 |
| Conread position: | 163-474 |
| Cow position: | chr23:13834587-13834886 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 181, 57 |
| Conread position: | 248-510 |
| Cow position: | chr23:12831081-12831341 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 55 |
| Conread position: | 249-506 |
| Cow position: | chr23:10717614-10717359 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 249-696 |
| Cow position: | chr23:15040606-15040162 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 249-712 |
| Cow position: | chr23:6221618-6222076 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 313 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 249-717 |
| Cow position: | chr23:7043950-7043471 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 249-730 |
| Cow position: | chr23:30635869-30635385 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 131, 161 |
| Conread position: | 249-800 |
| Cow position: | chr23:8099259-8099819 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 161 |
| Conread position: | 252-508 |
| Cow position: | chr23:4102290-4102034 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 122, 158 |
| Conread position: | 288-790 |
| Cow position: | chr23:5625564-5625058 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 298-672 |
| Cow position: | chr23:4638595-4638210 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 112 |
| Conread position: | 298-784 |
| Cow position: | chr23:15568911-15568408 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 112 |
| Conread position: | 299-672 |
| Cow position: | chr23:19985866-19985493 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 183 |
| Conread position: | 303-790 |
| Cow position: | chr23:7314074-7313571 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 107 |
| Conread position: | 307-623 |
| Cow position: | chr23:27699481-27699169 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 123, 204 |
| Conread position: | 308-790 |
| Cow position: | chr23:25350380-25350878 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 320-765 |
| Cow position: | chr23:19441840-19441370 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 305 |
| Conread position: | 323-639 |
| Cow position: | chr23:21792430-21792109 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 329-617 |
| Cow position: | chr23:2578030-2578332 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 349-773 |
| Cow position: | chr23:37651979-37652419 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 358-671 |
| Cow position: | chr23:15216975-15216658 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 358-784 |
| Cow position: | chr23:28220781-28221222 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 392-784 |
| Cow position: | chr23:2792654-2792249 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 149 |
| Conread position: | 405-800 |
| Cow position: | chr23:17877797-17877387 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 159 |
| Conread position: | 561-800 |
| Cow position: | chr23:1799924-1800171 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 202 |
Show alignments to all cow chromosomes.