Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 41-753 |
| Cow position: | chr25:26900103-26900810 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 48-655 |
| Cow position: | chr25:18210350-18209749 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 55 |
| Conread position: | 53-703 |
| Cow position: | chr25:21965827-21966465 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 66 |
| Conread position: | 53-712 |
| Cow position: | chr25:35627605-35626979 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 68 |
| Conread position: | 54-224 |
| Cow position: | chr25:12940825-12940661 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 54-484 |
| Cow position: | chr25:13692820-13692411 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-510 |
| Cow position: | chr25:18178538-18178969 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 64 |
| Conread position: | 54-597 |
| Cow position: | chr25:17587720-17587184 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-624 |
| Cow position: | chr25:22149404-22149953 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 56 |
| Conread position: | 54-712 |
| Cow position: | chr25:27522782-27522130 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 68 |
| Conread position: | 54-730 |
| Cow position: | chr25:25508550-25509217 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-764 |
| Cow position: | chr25:27020750-27020047 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-764 |
| Cow position: | chr25:34506237-34505530 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-778 |
| Cow position: | chr25:17656247-17656943 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 42 |
| Conread position: | 54-781 |
| Cow position: | chr25:16924555-16923831 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 72 |
| Conread position: | 54-784 |
| Cow position: | chr25:11042187-11042924 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 54-784 |
| Cow position: | chr25:11930941-11930236 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 56 |
| Conread position: | 54-784 |
| Cow position: | chr25:19338752-19338011 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-784 |
| Cow position: | chr25:19922388-19923120 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 54-784 |
| Cow position: | chr25:29358607-29359333 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 54-784 |
| Cow position: | chr25:32579052-32578355 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-784 |
| Cow position: | chr25:34495563-34494843 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 54-790 |
| Cow position: | chr25:14538080-14537352 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-790 |
| Cow position: | chr25:18887896-18887159 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 65 |
| Conread position: | 55-410 |
| Cow position: | chr25:35588487-35588158 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 55-784 |
| Cow position: | chr25:28861456-28862173 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 56-629 |
| Cow position: | chr25:9393797-9394345 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 28 |
| Conread position: | 59-751 |
| Cow position: | chr25:30129929-30129248 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 459 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 48 |
| Conread position: | 61-240 |
| Cow position: | chr25:24215647-24215475 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 168, 58 |
| Conread position: | 61-406 |
| Cow position: | chr25:13782902-13783230 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 58 |
| Conread position: | 61-498 |
| Cow position: | chr25:34345150-34344739 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 57 |
| Conread position: | 61-753 |
| Cow position: | chr25:18191801-18191114 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 61 |
| Conread position: | 61-779 |
| Cow position: | chr25:16448809-16448140 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 58 |
| Conread position: | 61-800 |
| Cow position: | chr25:20631478-20632212 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 55 |
| Conread position: | 62-800 |
| Cow position: | chr25:13958663-13959388 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 57 |
| Conread position: | 64-222 |
| Cow position: | chr25:26455343-26455496 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 67-579 |
| Cow position: | chr25:2368850-2369355 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 113 |
| Conread position: | 67-717 |
| Cow position: | chr25:26354203-26354839 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 53 |
| Conread position: | 78-796 |
| Cow position: | chr25:13771682-13770952 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 42 |
| Conread position: | 94-780 |
| Cow position: | chr25:21545824-21546503 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 440 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 111-617 |
| Cow position: | chr25:13793589-13793088 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 116-800 |
| Cow position: | chr25:33261110-33261782 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 62 |
| Conread position: | 127-784 |
| Cow position: | chr25:15365813-15366451 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 93 |
| Conread position: | 131-790 |
| Cow position: | chr25:13351611-13352279 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 149-784 |
| Cow position: | chr25:26280691-26281326 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 81 |
| Conread position: | 150-764 |
| Cow position: | chr25:20773664-20773048 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 70 |
| Conread position: | 198-364 |
| Cow position: | chr25:12940709-12940544 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 221-800 |
| Cow position: | chr25:24215526-24214938 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 249-426 |
| Cow position: | chr25:16431119-16430943 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 249-492 |
| Cow position: | chr25:17613260-17613029 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 249-492 |
| Cow position: | chr25:30267536-30267767 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 249-590 |
| Cow position: | chr25:32897655-32898006 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 123, 147 |
| Conread position: | 249-602 |
| Cow position: | chr25:36635706-36635352 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 128, 54 |
| Conread position: | 249-667 |
| Cow position: | chr25:21949120-21948710 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 181, 80 |
| Conread position: | 249-782 |
| Cow position: | chr25:26929617-26930171 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 249-784 |
| Cow position: | chr25:34511001-34510443 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 110 |
| Conread position: | 249-796 |
| Cow position: | chr25:18324813-18324272 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 249-800 |
| Cow position: | chr25:12835811-12835247 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 375 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 251-646 |
| Cow position: | chr25:7577513-7577114 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 121, 159 |
| Conread position: | 262-801 |
| Cow position: | chr25:26455496-26456020 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 274-784 |
| Cow position: | chr25:29803998-29803475 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 141 |
| Conread position: | 281-497 |
| Cow position: | chr25:10135441-10135660 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 293-796 |
| Cow position: | chr25:35562706-35562192 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 349 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 298-784 |
| Cow position: | chr25:35552491-35552994 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 112 |
| Conread position: | 304-669 |
| Cow position: | chr25:12173311-12172933 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 339-800 |
| Cow position: | chr25:41106289-41106764 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 340-800 |
| Cow position: | chr25:24206555-24206096 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 351-724 |
| Cow position: | chr25:12940315-12939929 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 405-784 |
| Cow position: | chr25:23774295-23773894 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 413-779 |
| Cow position: | chr25:24656519-24656134 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 80, 128 |
| Conread position: | 504-779 |
| Cow position: | chr25:12699993-12700270 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 535-800 |
| Cow position: | chr25:34667681-34667412 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 180 |
Show alignments to all cow chromosomes.