Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 52-791 |
| Cow position: | |
| Alignm length: | 752 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 68 |
| Conread position: | 53-781 |
| Cow position: | |
| Alignm length: | 763 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 62 |
| Conread position: | 54-237 |
| Cow position: | |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 54-352 |
| Cow position: | |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 54-393 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-404 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-472 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 179 |
| Conread position: | 54-671 |
| Cow position: | |
| Alignm length: | 635 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-717 |
| Cow position: | |
| Alignm length: | 688 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 69 |
| Conread position: | 54-717 |
| Cow position: | |
| Alignm length: | 691 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-726 |
| Cow position: | |
| Alignm length: | 698 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 62 |
| Conread position: | 54-731 |
| Cow position: | |
| Alignm length: | 705 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 68 |
| Conread position: | 54-764 |
| Cow position: | |
| Alignm length: | 734 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 56 |
| Conread position: | 54-766 |
| Cow position: | |
| Alignm length: | 730 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 760 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 742 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-784 |
| Cow position: | |
| Alignm length: | 757 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 66 |
| Conread position: | 54-790 |
| Cow position: | |
| Alignm length: | 752 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 68 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 783 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 65 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 773 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 65 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 778 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 68 |
| Conread position: | 54-800 |
| Cow position: | |
| Alignm length: | 770 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 65 |
| Conread position: | 59-330 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 59-784 |
| Cow position: | |
| Alignm length: | 746 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 60 |
| Conread position: | 61-237 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 61-348 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-492 |
| Cow position: | |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 292, 44 |
| Conread position: | 61-784 |
| Cow position: | |
| Alignm length: | 754 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 58 |
| Conread position: | 61-800 |
| Cow position: | |
| Alignm length: | 758 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 41 |
| Conread position: | 61-803 |
| Cow position: | |
| Alignm length: | 769 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 62-354 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 163, 31 |
| Conread position: | 64-800 |
| Cow position: | |
| Alignm length: | 760 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 55 |
| Conread position: | 64-804 |
| Cow position: | |
| Alignm length: | 759 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 55 |
| Conread position: | 65-498 |
| Cow position: | |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 307, 67 |
| Conread position: | 65-693 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 401 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 427, 77 |
| Conread position: | 67-784 |
| Cow position: | |
| Alignm length: | 748 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 78-784 |
| Cow position: | |
| Alignm length: | 732 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 42 |
| Conread position: | 88-652 |
| Cow position: | |
| Alignm length: | 582 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 34 |
| Conread position: | 90-747 |
| Cow position: | |
| Alignm length: | 675 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 30 |
| Conread position: | 98-484 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 22 |
| Conread position: | 123-629 |
| Cow position: | |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 219, 44 |
| Conread position: | 124-614 |
| Cow position: | |
| Alignm length: | 505 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 55 |
| Conread position: | 126-790 |
| Cow position: | |
| Alignm length: | 694 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 100 |
| Conread position: | 130-416 |
| Cow position: | |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 244, 42 |
| Conread position: | 136-793 |
| Cow position: | |
| Alignm length: | 675 |
| Alignm identity: | 421 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 136, 43 |
| Conread position: | 153-784 |
| Cow position: | |
| Alignm length: | 657 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 88 |
| Conread position: | 248-697 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 249-782 |
| Cow position: | |
| Alignm length: | 552 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 249-790 |
| Cow position: | |
| Alignm length: | 556 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 161 |
| Conread position: | 251-484 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 130, 64 |
| Conread position: | 255-510 |
| Cow position: | |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 272-416 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 283-731 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 89, 64 |
| Conread position: | 288-671 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 296-776 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 298-800 |
| Cow position: | |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 112 |
| Conread position: | 319-790 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 323-790 |
| Cow position: | |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 339-752 |
| Cow position: | |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 388-764 |
| Cow position: | |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 436-781 |
| Cow position: | |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 436-784 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 445-784 |
| Cow position: | |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 446-801 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 548-779 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 128, 71 |
| Conread position: | 599-800 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 20 |
Show alignments to all cow chromosomes.