Cow genome map
| Conread name: | Ss1.1-Thy1-THY010064A03.5 |
| Conread position: | 53-217 |
| Cow position: | chr27:23293339-23293497 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 54-224 |
| Cow position: | chr27:15274268-15274109 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 54-237 |
| Cow position: | chr27:3233722-3233548 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 54-334 |
| Cow position: | chr27:31270670-31270934 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 262, 68 |
| Conread position: | 54-355 |
| Cow position: | chr27:10377540-10377824 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 54-411 |
| Cow position: | chr27:797766-797426 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 66 |
| Conread position: | 54-624 |
| Cow position: | chr27:4333249-4332685 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 87 |
| Conread position: | 54-629 |
| Cow position: | chr27:1676772-1676211 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 25 |
| Conread position: | 54-637 |
| Cow position: | chr27:1211157-1211727 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 56 |
| Conread position: | 54-654 |
| Cow position: | chr27:6016225-6016817 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 62 |
| Conread position: | 54-764 |
| Cow position: | chr27:5912712-5913432 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 65 |
| Conread position: | 54-779 |
| Cow position: | chr27:4981170-4981888 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 54-784 |
| Cow position: | chr27:167127-166400 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 56 |
| Conread position: | 54-784 |
| Cow position: | chr27:9331542-9332262 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 67 |
| Conread position: | 54-784 |
| Cow position: | chr27:15035308-15034579 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 48 |
| Conread position: | 54-784 |
| Cow position: | chr27:16032603-16031884 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 24 |
| Conread position: | 54-784 |
| Cow position: | chr27:26553644-26552909 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 498 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 137 |
| Conread position: | 54-800 |
| Cow position: | chr27:8590876-8591600 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 68 |
| Conread position: | 54-800 |
| Cow position: | chr27:12748838-12749562 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 65 |
| Conread position: | 54-800 |
| Cow position: | chr27:15635542-15634803 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 65 |
| Conread position: | 54-800 |
| Cow position: | chr27:26326862-26327591 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 65 |
| Conread position: | 54-800 |
| Cow position: | chr27:27664793-27665540 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 62 |
| Conread position: | 56-715 |
| Cow position: | chr27:5984639-5985307 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 180 |
| Conread position: | 59-800 |
| Cow position: | chr27:27194550-27193822 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 473 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 282, 57 |
| Conread position: | 61-410 |
| Cow position: | chr27:160789-161121 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 29 |
| Conread position: | 61-410 |
| Cow position: | chr27:28893412-28893734 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 211, 46 |
| Conread position: | 61-800 |
| Cow position: | chr27:9991408-9990682 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 58 |
| Conread position: | 61-800 |
| Cow position: | chr27:27288303-27289030 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 56 |
| Conread position: | 62-796 |
| Cow position: | chr27:21285385-21284664 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 54 |
| Conread position: | 62-804 |
| Cow position: | chr27:22743586-22742849 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 58 |
| Conread position: | 63-321 |
| Cow position: | chr27:25802885-25802645 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 63-623 |
| Cow position: | chr27:6375450-6374920 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 292, 53 |
| Conread position: | 63-639 |
| Cow position: | chr27:24574291-24573731 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 61 |
| Conread position: | 65-800 |
| Cow position: | chr27:15373656-15374360 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 66-510 |
| Cow position: | chr27:16426561-16426973 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 306, 54 |
| Conread position: | 72-712 |
| Cow position: | chr27:11432939-11433570 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 51 |
| Conread position: | 88-508 |
| Cow position: | chr27:27889689-27890086 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 290, 31 |
| Conread position: | 93-491 |
| Cow position: | chr27:26032033-26031650 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 293, 30 |
| Conread position: | 111-452 |
| Cow position: | chr27:28081255-28081582 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 261, 114 |
| Conread position: | 136-800 |
| Cow position: | chr27:19524845-19524183 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 94 |
| Conread position: | 146-787 |
| Cow position: | chr27:25059014-25059635 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 428 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 149-664 |
| Cow position: | chr27:66928-66415 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 77 |
| Conread position: | 159-784 |
| Cow position: | chr27:15274197-15273558 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 160-616 |
| Cow position: | chr27:21453318-21453767 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 66 |
| Conread position: | 198-779 |
| Cow position: | chr27:3233608-3233013 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 198-800 |
| Cow position: | chr27:8199724-8200336 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 249-491 |
| Cow position: | chr27:25034458-25034230 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 249-580 |
| Cow position: | chr27:11487604-11487946 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 249-630 |
| Cow position: | chr27:27499720-27500092 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 145, 93 |
| Conread position: | 249-664 |
| Cow position: | chr27:25786833-25786417 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 80, 173 |
| Conread position: | 249-706 |
| Cow position: | chr27:30034114-30034601 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 305 |
| Conread position: | 249-784 |
| Cow position: | chr27:13352279-13352810 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 172 |
| Conread position: | 249-800 |
| Cow position: | chr27:13899868-13900426 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 161 |
| Conread position: | 252-401 |
| Cow position: | chr27:25988196-25988343 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 255-779 |
| Cow position: | chr27:22013386-22012850 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 265-491 |
| Cow position: | chr27:22814659-22814881 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 107, 145 |
| Conread position: | 281-617 |
| Cow position: | chr27:4803191-4802849 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 281-800 |
| Cow position: | chr27:3991003-3991543 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 129 |
| Conread position: | 288-589 |
| Cow position: | chr27:10325112-10324805 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 107, 121 |
| Conread position: | 297-510 |
| Cow position: | chr27:21496408-21496619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 80, 112 |
| Conread position: | 298-674 |
| Cow position: | chr27:25884897-25884502 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 341-800 |
| Cow position: | chr27:10377992-10378462 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 342-766 |
| Cow position: | chr27:3995840-3995394 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 203 |
| Conread position: | 376-667 |
| Cow position: | chr27:23293660-23293953 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 384-800 |
| Cow position: | chr27:28294756-28294332 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 497-784 |
| Cow position: | chr27:20809633-20809928 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 503-784 |
| Cow position: | chr27:1535418-1535699 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 504-804 |
| Cow position: | chr27:17567360-17567650 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 36 |
Show alignments to all cow chromosomes.