Cow genome map

Conread name: Ss1.1-Thy1-THY010064A03.5

Conread position: 51-704
Cow position:
Alignm length: 668
Alignm identity: 426
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 39

Conread position: 52-443
Cow position:
Alignm length: 395
Alignm identity: 263
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 133, 10

Conread position: 52-492
Cow position:
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 7

Conread position: 53-751
Cow position:
Alignm length: 724
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 64

Conread position: 53-800
Cow position:
Alignm length: 768
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 66

Conread position: 53-800
Cow position:
Alignm length: 771
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 66

Conread position: 53-804
Cow position:
Alignm length: 777
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 84

Conread position: 54-182
Cow position:
Alignm length: 129
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 54-232
Cow position:
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 62

Conread position: 54-235
Cow position:
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 54-237
Cow position:
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 54-446
Cow position:
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 57

Conread position: 54-453
Cow position:
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-492
Cow position:
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 66

Conread position: 54-492
Cow position:
Alignm length: 441
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 68

Conread position: 54-510
Cow position:
Alignm length: 462
Alignm identity: 296
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 218, 18

Conread position: 54-590
Cow position:
Alignm length: 547
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 67

Conread position: 54-617
Cow position:
Alignm length: 580
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 41

Conread position: 54-639
Cow position:
Alignm length: 600
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-689
Cow position:
Alignm length: 650
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 66

Conread position: 54-691
Cow position:
Alignm length: 658
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 68

Conread position: 54-724
Cow position:
Alignm length: 692
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 65

Conread position: 54-752
Cow position:
Alignm length: 711
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 59

Conread position: 54-779
Cow position:
Alignm length: 753
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 56

Conread position: 54-779
Cow position:
Alignm length: 755
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 66

Conread position: 54-784
Cow position:
Alignm length: 755
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-784
Cow position:
Alignm length: 757
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 753
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 56

Conread position: 54-784
Cow position:
Alignm length: 757
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 66

Conread position: 54-784
Cow position:
Alignm length: 759
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-784
Cow position:
Alignm length: 761
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 68

Conread position: 54-784
Cow position:
Alignm length: 759
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 66

Conread position: 54-784
Cow position:
Alignm length: 756
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 67

Conread position: 54-784
Cow position:
Alignm length: 749
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 772
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 37

Conread position: 54-800
Cow position:
Alignm length: 765
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 65

Conread position: 54-800
Cow position:
Alignm length: 769
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 771
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 770
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 65

Conread position: 54-800
Cow position:
Alignm length: 774
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 65

Conread position: 54-800
Cow position:
Alignm length: 766
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 65

Conread position: 54-800
Cow position:
Alignm length: 770
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 127

Conread position: 54-800
Cow position:
Alignm length: 781
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 67

Conread position: 54-801
Cow position:
Alignm length: 780
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 55

Conread position: 54-804
Cow position:
Alignm length: 768
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 32

Conread position: 55-494
Cow position:
Alignm length: 443
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 64

Conread position: 55-629
Cow position:
Alignm length: 599
Alignm identity: 351
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 78, 63

Conread position: 55-800
Cow position:
Alignm length: 786
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 63

Conread position: 56-400
Cow position:
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 46

Conread position: 56-804
Cow position:
Alignm length: 766
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 63

Conread position: 57-511
Cow position:
Alignm length: 460
Alignm identity: 300
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 121, 62

Conread position: 58-652
Cow position:
Alignm length: 609
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 79

Conread position: 59-190
Cow position:
Alignm length: 132
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 59-411
Cow position:
Alignm length: 369
Alignm identity: 263
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 180, 44

Conread position: 59-800
Cow position:
Alignm length: 774
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 60-800
Cow position:
Alignm length: 761
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 50

Conread position: 61-332
Cow position:
Alignm length: 272
Alignm identity: 195
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 61-411
Cow position:
Alignm length: 353
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 59

Conread position: 61-472
Cow position:
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 55

Conread position: 61-473
Cow position:
Alignm length: 415
Alignm identity: 274
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 311, 71

Conread position: 61-693
Cow position:
Alignm length: 651
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 61

Conread position: 61-784
Cow position:
Alignm length: 766
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 20

Conread position: 61-784
Cow position:
Alignm length: 758
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 175

Conread position: 61-784
Cow position:
Alignm length: 747
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 36

Conread position: 61-799
Cow position:
Alignm length: 768
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 62

Conread position: 61-800
Cow position:
Alignm length: 768
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 58

Conread position: 62-199
Cow position:
Alignm length: 138
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 64-696
Cow position:
Alignm length: 651
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 59

Conread position: 65-691
Cow position:
Alignm length: 651
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 53

Conread position: 65-726
Cow position:
Alignm length: 688
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 43

Conread position: 65-800
Cow position:
Alignm length: 755
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 43

Conread position: 67-600
Cow position:
Alignm length: 544
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 167

Conread position: 79-416
Cow position:
Alignm length: 342
Alignm identity: 242
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 5, 14

Conread position: 103-411
Cow position:
Alignm length: 311
Alignm identity: 222
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 269, 19

Conread position: 103-777
Cow position:
Alignm length: 702
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 33

Conread position: 110-661
Cow position:
Alignm length: 576
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 17

Conread position: 123-787
Cow position:
Alignm length: 695
Alignm identity: 447
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 185, 12

Conread position: 124-688
Cow position:
Alignm length: 583
Alignm identity: 366
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 97

Conread position: 126-784
Cow position:
Alignm length: 683
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 100

Conread position: 130-469
Cow position:
Alignm length: 344
Alignm identity: 225
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 201, 7

Conread position: 146-790
Cow position:
Alignm length: 662
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 80

Conread position: 149-787
Cow position:
Alignm length: 657
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 77

Conread position: 150-484
Cow position:
Alignm length: 337
Alignm identity: 232
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 227, 18

Conread position: 150-764
Cow position:
Alignm length: 636
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 76

Conread position: 151-784
Cow position:
Alignm length: 658
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 76

Conread position: 153-784
Cow position:
Alignm length: 645
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 50

Conread position: 156-796
Cow position:
Alignm length: 664
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 69

Conread position: 157-507
Cow position:
Alignm length: 357
Alignm identity: 241
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 215, 69

Conread position: 158-453
Cow position:
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 236, 68

Conread position: 158-800
Cow position:
Alignm length: 674
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 57

Conread position: 167-411
Cow position:
Alignm length: 248
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 59

Conread position: 210-510
Cow position:
Alignm length: 306
Alignm identity: 211
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 164, 41

Conread position: 237-781
Cow position:
Alignm length: 561
Alignm identity: 362
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 24, 166

Conread position: 248-790
Cow position:
Alignm length: 563
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 167

Conread position: 249-492
Cow position:
Alignm length: 247
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 92

Conread position: 249-510
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 155

Conread position: 249-611
Cow position:
Alignm length: 374
Alignm identity: 239
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 247

Conread position: 249-759
Cow position:
Alignm length: 535
Alignm identity: 344
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 34

Conread position: 249-784
Cow position:
Alignm length: 561
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 161

Conread position: 251-714
Cow position:
Alignm length: 486
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 32

Conread position: 251-762
Cow position:
Alignm length: 534
Alignm identity: 347
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 53, 74

Conread position: 252-492
Cow position:
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 119, 140

Conread position: 252-656
Cow position:
Alignm length: 409
Alignm identity: 277
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 65, 45

Conread position: 262-492
Cow position:
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 112, 148

Conread position: 265-800
Cow position:
Alignm length: 544
Alignm identity: 354
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 107, 145

Conread position: 271-479
Cow position:
Alignm length: 213
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 139

Conread position: 279-784
Cow position:
Alignm length: 526
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 136

Conread position: 281-613
Cow position:
Alignm length: 347
Alignm identity: 233
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 8, 57

Conread position: 288-689
Cow position:
Alignm length: 412
Alignm identity: 266
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 82, 19

Conread position: 297-800
Cow position:
Alignm length: 534
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 56

Conread position: 298-784
Cow position:
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 300-784
Cow position:
Alignm length: 505
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 110

Conread position: 302-784
Cow position:
Alignm length: 512
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 114

Conread position: 304-778
Cow position:
Alignm length: 486
Alignm identity: 313
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 82, 29

Conread position: 305-799
Cow position:
Alignm length: 524
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 315-784
Cow position:
Alignm length: 491
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 95

Conread position: 316-501
Cow position:
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 31

Conread position: 322-503
Cow position:
Alignm length: 185
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 88

Conread position: 328-784
Cow position:
Alignm length: 481
Alignm identity: 315
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 82

Conread position: 330-784
Cow position:
Alignm length: 489
Alignm identity: 322
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 44, 80

Conread position: 372-797
Cow position:
Alignm length: 444
Alignm identity: 283
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 45

Conread position: 379-800
Cow position:
Alignm length: 442
Alignm identity: 286
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 115, 34

Conread position: 387-790
Cow position:
Alignm length: 428
Alignm identity: 282
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 8, 27

Conread position: 470-795
Cow position:
Alignm length: 340
Alignm identity: 226
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 30, 24

Conread position: 497-800
Cow position:
Alignm length: 315
Alignm identity: 208
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 33

Conread position: 510-784
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 20

Show alignments to all cow chromosomes.