Cow genome map

Conread name: Ss1.1-Thy1-THY010064A03.5

Conread position: 36-800
Cow position:
Alignm length: 785
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 46-735
Cow position:
Alignm length: 714
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 73

Conread position: 46-753
Cow position:
Alignm length: 733
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 74

Conread position: 46-787
Cow position:
Alignm length: 763
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 73

Conread position: 46-800
Cow position:
Alignm length: 779
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 73

Conread position: 52-412
Cow position:
Alignm length: 363
Alignm identity: 236
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 320, 29

Conread position: 53-800
Cow position:
Alignm length: 780
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 69

Conread position: 53-800
Cow position:
Alignm length: 774
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 68

Conread position: 54-224
Cow position:
Alignm length: 171
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 54-316
Cow position:
Alignm length: 264
Alignm identity: 187
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 206, 66

Conread position: 54-354
Cow position:
Alignm length: 301
Alignm identity: 217
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 54-375
Cow position:
Alignm length: 324
Alignm identity: 226
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 288, 15

Conread position: 54-452
Cow position:
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 54-453
Cow position:
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-453
Cow position:
Alignm length: 402
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 62

Conread position: 54-480
Cow position:
Alignm length: 429
Alignm identity: 285
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 318, 68

Conread position: 54-508
Cow position:
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 67

Conread position: 54-508
Cow position:
Alignm length: 461
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 42

Conread position: 54-510
Cow position:
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-629
Cow position:
Alignm length: 600
Alignm identity: 390
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 320, 56

Conread position: 54-639
Cow position:
Alignm length: 603
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-667
Cow position:
Alignm length: 629
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-719
Cow position:
Alignm length: 689
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 68

Conread position: 54-748
Cow position:
Alignm length: 717
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 56

Conread position: 54-764
Cow position:
Alignm length: 732
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 761
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 66

Conread position: 54-784
Cow position:
Alignm length: 756
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 752
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-784
Cow position:
Alignm length: 756
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-784
Cow position:
Alignm length: 771
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 184

Conread position: 54-784
Cow position:
Alignm length: 758
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-784
Cow position:
Alignm length: 756
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-790
Cow position:
Alignm length: 763
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 44

Conread position: 54-790
Cow position:
Alignm length: 765
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 66

Conread position: 54-797
Cow position:
Alignm length: 772
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 155

Conread position: 54-800
Cow position:
Alignm length: 769
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 772
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 775
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 766
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 766
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-800
Cow position:
Alignm length: 771
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-801
Cow position:
Alignm length: 775
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 65

Conread position: 54-804
Cow position:
Alignm length: 775
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 65

Conread position: 54-804
Cow position:
Alignm length: 769
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 69

Conread position: 54-804
Cow position:
Alignm length: 779
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 66

Conread position: 55-753
Cow position:
Alignm length: 722
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 60

Conread position: 55-784
Cow position:
Alignm length: 767
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 65

Conread position: 56-689
Cow position:
Alignm length: 651
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 42

Conread position: 56-784
Cow position:
Alignm length: 747
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 46

Conread position: 58-751
Cow position:
Alignm length: 726
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 62

Conread position: 59-400
Cow position:
Alignm length: 345
Alignm identity: 236
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 297, 53

Conread position: 59-403
Cow position:
Alignm length: 350
Alignm identity: 241
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 66

Conread position: 59-411
Cow position:
Alignm length: 355
Alignm identity: 242
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 313, 63

Conread position: 59-639
Cow position:
Alignm length: 596
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 51

Conread position: 59-795
Cow position:
Alignm length: 761
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 60

Conread position: 60-614
Cow position:
Alignm length: 584
Alignm identity: 387
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 79, 132

Conread position: 61-411
Cow position:
Alignm length: 352
Alignm identity: 246
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 315, 61

Conread position: 61-510
Cow position:
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 61

Conread position: 61-636
Cow position:
Alignm length: 587
Alignm identity: 373
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 61, 46

Conread position: 61-639
Cow position:
Alignm length: 593
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 65

Conread position: 61-764
Cow position:
Alignm length: 726
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 28

Conread position: 61-779
Cow position:
Alignm length: 734
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 61

Conread position: 61-784
Cow position:
Alignm length: 745
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 65

Conread position: 61-784
Cow position:
Alignm length: 747
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 52

Conread position: 61-784
Cow position:
Alignm length: 761
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 61

Conread position: 62-783
Cow position:
Alignm length: 745
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 48

Conread position: 62-804
Cow position:
Alignm length: 788
Alignm identity: 512
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 60

Conread position: 63-722
Cow position:
Alignm length: 685
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 44

Conread position: 63-787
Cow position:
Alignm length: 751
Alignm identity: 466
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 312, 59

Conread position: 63-800
Cow position:
Alignm length: 774
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 56

Conread position: 70-800
Cow position:
Alignm length: 746
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 26

Conread position: 72-484
Cow position:
Alignm length: 414
Alignm identity: 273
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 310, 54

Conread position: 79-411
Cow position:
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 43

Conread position: 83-781
Cow position:
Alignm length: 724
Alignm identity: 451
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 77, 36

Conread position: 123-800
Cow position:
Alignm length: 705
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 125-639
Cow position:
Alignm length: 529
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 54

Conread position: 126-790
Cow position:
Alignm length: 689
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 100

Conread position: 129-784
Cow position:
Alignm length: 680
Alignm identity: 428
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 124, 42

Conread position: 129-800
Cow position:
Alignm length: 694
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 97

Conread position: 131-790
Cow position:
Alignm length: 681
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 12

Conread position: 132-775
Cow position:
Alignm length: 667
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 82

Conread position: 136-383
Cow position:
Alignm length: 250
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 44, 91

Conread position: 136-790
Cow position:
Alignm length: 680
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 90

Conread position: 146-800
Cow position:
Alignm length: 684
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 80

Conread position: 149-463
Cow position:
Alignm length: 319
Alignm identity: 217
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 223, 77

Conread position: 149-731
Cow position:
Alignm length: 602
Alignm identity: 382
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 78

Conread position: 152-784
Cow position:
Alignm length: 653
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 18

Conread position: 153-782
Cow position:
Alignm length: 654
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 73

Conread position: 198-784
Cow position:
Alignm length: 611
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 219

Conread position: 245-784
Cow position:
Alignm length: 559
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 61

Conread position: 249-393
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 123, 69

Conread position: 249-411
Cow position:
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 92

Conread position: 249-443
Cow position:
Alignm length: 197
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 125, 160

Conread position: 249-510
Cow position:
Alignm length: 265
Alignm identity: 179
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 244, 39

Conread position: 249-521
Cow position:
Alignm length: 279
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 162

Conread position: 249-638
Cow position:
Alignm length: 404
Alignm identity: 265
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 104

Conread position: 249-781
Cow position:
Alignm length: 549
Alignm identity: 339
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 242, 91

Conread position: 249-787
Cow position:
Alignm length: 557
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 87

Conread position: 249-800
Cow position:
Alignm length: 580
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 45

Conread position: 252-800
Cow position:
Alignm length: 573
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 158

Conread position: 253-411
Cow position:
Alignm length: 160
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 253-784
Cow position:
Alignm length: 557
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 157

Conread position: 262-463
Cow position:
Alignm length: 213
Alignm identity: 159
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 110, 0

Conread position: 263-474
Cow position:
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 123, 86

Conread position: 263-790
Cow position:
Alignm length: 555
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 268-766
Cow position:
Alignm length: 517
Alignm identity: 341
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 17

Conread position: 269-664
Cow position:
Alignm length: 409
Alignm identity: 269
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 136

Conread position: 272-673
Cow position:
Alignm length: 417
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 93, 140

Conread position: 274-790
Cow position:
Alignm length: 542
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 136

Conread position: 281-800
Cow position:
Alignm length: 536
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 283-492
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 89, 59

Conread position: 285-790
Cow position:
Alignm length: 535
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 288-625
Cow position:
Alignm length: 350
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 86, 122

Conread position: 298-664
Cow position:
Alignm length: 398
Alignm identity: 259
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 14

Conread position: 298-784
Cow position:
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 112

Conread position: 307-784
Cow position:
Alignm length: 502
Alignm identity: 329
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 89

Conread position: 320-753
Cow position:
Alignm length: 460
Alignm identity: 303
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 27

Conread position: 347-784
Cow position:
Alignm length: 463
Alignm identity: 300
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 27, 68

Conread position: 366-703
Cow position:
Alignm length: 358
Alignm identity: 233
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 88

Conread position: 405-690
Cow position:
Alignm length: 302
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 154

Conread position: 406-800
Cow position:
Alignm length: 417
Alignm identity: 270
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 28, 15

Conread position: 413-800
Cow position:
Alignm length: 405
Alignm identity: 264
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 115

Conread position: 426-800
Cow position:
Alignm length: 401
Alignm identity: 260
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 115

Conread position: 449-800
Cow position:
Alignm length: 377
Alignm identity: 252
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 45, 93

Conread position: 497-784
Cow position:
Alignm length: 294
Alignm identity: 195
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 176, 43

Show alignments to all cow chromosomes.