Cow genome map

Conread name: Ss1.1-Thy1-THY010066E12.5

Conread position: 1-367
Cow position:
Alignm length: 370
Alignm identity: 231
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 29

Conread position: 2-299
Cow position:
Alignm length: 300
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 30

Conread position: 2-302
Cow position:
Alignm length: 304
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 202

Conread position: 2-312
Cow position:
Alignm length: 316
Alignm identity: 209
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 126, 111

Conread position: 2-314
Cow position:
Alignm length: 315
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 2-332
Cow position:
Alignm length: 339
Alignm identity: 223
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 39

Conread position: 2-335
Cow position:
Alignm length: 340
Alignm identity: 231
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 129, 49

Conread position: 2-342
Cow position:
Alignm length: 347
Alignm identity: 234
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 61, 103

Conread position: 2-343
Cow position:
Alignm length: 351
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 2-357
Cow position:
Alignm length: 364
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-357
Cow position:
Alignm length: 361
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-358
Cow position:
Alignm length: 362
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 99

Conread position: 2-358
Cow position:
Alignm length: 375
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 292

Conread position: 2-363
Cow position:
Alignm length: 367
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-363
Cow position:
Alignm length: 367
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 66

Conread position: 2-363
Cow position:
Alignm length: 367
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 134

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 237

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 211

Conread position: 2-364
Cow position:
Alignm length: 371
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 137

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 159

Conread position: 2-364
Cow position:
Alignm length: 370
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 250

Conread position: 2-364
Cow position:
Alignm length: 373
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 162

Conread position: 2-364
Cow position:
Alignm length: 378
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 191

Conread position: 2-364
Cow position:
Alignm length: 370
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 120

Conread position: 2-364
Cow position:
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 108

Conread position: 2-373
Cow position:
Alignm length: 378
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 30

Conread position: 2-378
Cow position:
Alignm length: 386
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 207

Conread position: 3-334
Cow position:
Alignm length: 336
Alignm identity: 231
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 87, 36

Conread position: 4-343
Cow position:
Alignm length: 344
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 199

Conread position: 4-363
Cow position:
Alignm length: 362
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 94

Conread position: 9-349
Cow position:
Alignm length: 344
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 71

Conread position: 10-333
Cow position:
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 49

Conread position: 11-358
Cow position:
Alignm length: 355
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 11-364
Cow position:
Alignm length: 371
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 11-364
Cow position:
Alignm length: 359
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 12

Conread position: 16-358
Cow position:
Alignm length: 348
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 226

Conread position: 17-335
Cow position:
Alignm length: 324
Alignm identity: 208
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 5

Conread position: 23-200
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 23-368
Cow position:
Alignm length: 352
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 52

Conread position: 29-298
Cow position:
Alignm length: 271
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 28

Conread position: 29-335
Cow position:
Alignm length: 311
Alignm identity: 203
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 111, 60

Conread position: 34-335
Cow position:
Alignm length: 305
Alignm identity: 208
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 69

Conread position: 43-358
Cow position:
Alignm length: 325
Alignm identity: 211
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 33, 7

Conread position: 45-274
Cow position:
Alignm length: 239
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 177

Conread position: 49-210
Cow position:
Alignm length: 163
Alignm identity: 130
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 82, 0

Conread position: 51-335
Cow position:
Alignm length: 290
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 67-361
Cow position:
Alignm length: 299
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 137

Conread position: 68-372
Cow position:
Alignm length: 313
Alignm identity: 221
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 47, 179

Conread position: 163-335
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 45, 103

Conread position: 181-302
Cow position:
Alignm length: 122
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 181-363
Cow position:
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 163, 35

Conread position: 356-479
Cow position:
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 95, 70

Conread position: 356-775
Cow position:
Alignm length: 437
Alignm identity: 292
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 73, 248

Conread position: 360-778
Cow position:
Alignm length: 433
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 17

Conread position: 371-771
Cow position:
Alignm length: 416
Alignm identity: 266
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 154

Conread position: 437-769
Cow position:
Alignm length: 341
Alignm identity: 225
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 25

Conread position: 442-613
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 9, 25

Conread position: 442-777
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 447-771
Cow position:
Alignm length: 330
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 146, 278

Conread position: 458-571
Cow position:
Alignm length: 114
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 459-733
Cow position:
Alignm length: 281
Alignm identity: 191
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 6, 0

Conread position: 459-780
Cow position:
Alignm length: 326
Alignm identity: 233
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 149, 106

Conread position: 464-586
Cow position:
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 464-597
Cow position:
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 464-649
Cow position:
Alignm length: 190
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 123, 0

Conread position: 464-663
Cow position:
Alignm length: 206
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 115, 0

Conread position: 464-669
Cow position:
Alignm length: 210
Alignm identity: 159
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 123, 0

Conread position: 464-709
Cow position:
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-730
Cow position:
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-736
Cow position:
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 32

Conread position: 464-744
Cow position:
Alignm length: 286
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 155, 228

Conread position: 464-768
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 126, 157

Conread position: 464-774
Cow position:
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 112

Conread position: 464-775
Cow position:
Alignm length: 316
Alignm identity: 215
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 123, 38

Conread position: 464-775
Cow position:
Alignm length: 315
Alignm identity: 205
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 58, 44

Conread position: 464-775
Cow position:
Alignm length: 314
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 23, 54

Conread position: 464-777
Cow position:
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 148

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 464-778
Cow position:
Alignm length: 318
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 149

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 255

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 255

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 212

Conread position: 464-778
Cow position:
Alignm length: 316
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 464-780
Cow position:
Alignm length: 318
Alignm identity: 216
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 206, 135

Conread position: 464-780
Cow position:
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 464-780
Cow position:
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 211
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 109, 12

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 40

Conread position: 464-780
Cow position:
Alignm length: 320
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 114

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 464-780
Cow position:
Alignm length: 324
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 194

Conread position: 466-761
Cow position:
Alignm length: 304
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 150

Conread position: 466-770
Cow position:
Alignm length: 312
Alignm identity: 202
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 36

Conread position: 466-777
Cow position:
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 466-778
Cow position:
Alignm length: 316
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 145

Conread position: 466-780
Cow position:
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 468-780
Cow position:
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 60

Conread position: 477-772
Cow position:
Alignm length: 301
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 111, 37

Conread position: 486-780
Cow position:
Alignm length: 306
Alignm identity: 195
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 125, 0

Conread position: 488-780
Cow position:
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 207

Conread position: 495-739
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 39, 207

Conread position: 503-683
Cow position:
Alignm length: 185
Alignm identity: 131
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 503-698
Cow position:
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 158, 94

Conread position: 503-780
Cow position:
Alignm length: 283
Alignm identity: 205
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 87, 19

Conread position: 519-775
Cow position:
Alignm length: 259
Alignm identity: 174
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 143, 33

Conread position: 534-780
Cow position:
Alignm length: 251
Alignm identity: 173
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 60, 81

Conread position: 543-780
Cow position:
Alignm length: 242
Alignm identity: 181
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 559-770
Cow position:
Alignm length: 217
Alignm identity: 159
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 574-778
Cow position:
Alignm length: 209
Alignm identity: 160
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 579-767
Cow position:
Alignm length: 193
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 129

Conread position: 580-778
Cow position:
Alignm length: 200
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 105, 36

Conread position: 580-780
Cow position:
Alignm length: 202
Alignm identity: 145
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 35, 137

Conread position: 586-778
Cow position:
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 589-780
Cow position:
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 591-778
Cow position:
Alignm length: 188
Alignm identity: 152
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 603-778
Cow position:
Alignm length: 178
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 34

Conread position: 611-780
Cow position:
Alignm length: 170
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 636-778
Cow position:
Alignm length: 143
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 639-780
Cow position:
Alignm length: 142
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.