Cow genome map

Conread name: Ss1.1-Thy1-THY010066E12.5

Conread position: 1-328
Cow position:
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 97

Conread position: 1-364
Cow position:
Alignm length: 369
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 31

Conread position: 2-128
Cow position:
Alignm length: 127
Alignm identity: 108
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-151
Cow position:
Alignm length: 152
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 126, 0

Conread position: 2-167
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 19

Conread position: 2-206
Cow position:
Alignm length: 209
Alignm identity: 150
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 93

Conread position: 2-307
Cow position:
Alignm length: 308
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 134

Conread position: 2-323
Cow position:
Alignm length: 323
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 26

Conread position: 2-342
Cow position:
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 24

Conread position: 2-343
Cow position:
Alignm length: 344
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 112, 78

Conread position: 2-343
Cow position:
Alignm length: 344
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 281

Conread position: 2-363
Cow position:
Alignm length: 371
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 191

Conread position: 2-363
Cow position:
Alignm length: 367
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 259

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 69

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 215

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 212

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 54

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 170

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 251

Conread position: 2-364
Cow position:
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 54

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 196

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 25

Conread position: 2-364
Cow position:
Alignm length: 376
Alignm identity: 254
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 34, 117

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 121

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 101

Conread position: 2-373
Cow position:
Alignm length: 376
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 102

Conread position: 2-646
Cow position:
Alignm length: 687
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 30

Conread position: 4-305
Cow position:
Alignm length: 305
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 168

Conread position: 4-326
Cow position:
Alignm length: 329
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 122, 236

Conread position: 4-362
Cow position:
Alignm length: 362
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 28

Conread position: 4-363
Cow position:
Alignm length: 365
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 15

Conread position: 4-363
Cow position:
Alignm length: 369
Alignm identity: 253
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 146

Conread position: 8-176
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 25

Conread position: 8-274
Cow position:
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 72

Conread position: 9-127
Cow position:
Alignm length: 119
Alignm identity: 98
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 9-326
Cow position:
Alignm length: 319
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 204, 225

Conread position: 9-364
Cow position:
Alignm length: 370
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 204

Conread position: 9-364
Cow position:
Alignm length: 361
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 176

Conread position: 17-293
Cow position:
Alignm length: 279
Alignm identity: 190
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 123, 14

Conread position: 24-300
Cow position:
Alignm length: 278
Alignm identity: 202
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 184, 14

Conread position: 42-364
Cow position:
Alignm length: 328
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 69

Conread position: 51-466
Cow position:
Alignm length: 431
Alignm identity: 282
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 79, 215

Conread position: 97-365
Cow position:
Alignm length: 280
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 49

Conread position: 98-268
Cow position:
Alignm length: 174
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 92

Conread position: 105-226
Cow position:
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 32

Conread position: 116-366
Cow position:
Alignm length: 254
Alignm identity: 165
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 197

Conread position: 127-310
Cow position:
Alignm length: 185
Alignm identity: 143
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 89, 0

Conread position: 140-285
Cow position:
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 148-364
Cow position:
Alignm length: 234
Alignm identity: 174
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 60, 0

Conread position: 150-331
Cow position:
Alignm length: 184
Alignm identity: 147
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 53

Conread position: 197-363
Cow position:
Alignm length: 171
Alignm identity: 138
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 223-363
Cow position:
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 122, 0

Conread position: 239-364
Cow position:
Alignm length: 129
Alignm identity: 103
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 247-364
Cow position:
Alignm length: 121
Alignm identity: 101
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 0

Conread position: 352-477
Cow position:
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 356-479
Cow position:
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 356-778
Cow position:
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 287

Conread position: 356-778
Cow position:
Alignm length: 434
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 371

Conread position: 360-780
Cow position:
Alignm length: 435
Alignm identity: 282
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 78, 51

Conread position: 388-770
Cow position:
Alignm length: 413
Alignm identity: 283
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 69, 165

Conread position: 447-773
Cow position:
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 7

Conread position: 447-777
Cow position:
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 19

Conread position: 447-778
Cow position:
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 229

Conread position: 456-751
Cow position:
Alignm length: 303
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 65

Conread position: 456-765
Cow position:
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 11

Conread position: 456-775
Cow position:
Alignm length: 325
Alignm identity: 217
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 9

Conread position: 456-778
Cow position:
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 9

Conread position: 456-779
Cow position:
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 9

Conread position: 456-780
Cow position:
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 14

Conread position: 456-780
Cow position:
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 462-780
Cow position:
Alignm length: 331
Alignm identity: 226
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 125, 264

Conread position: 464-605
Cow position:
Alignm length: 144
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 125, 6

Conread position: 464-663
Cow position:
Alignm length: 200
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 464-709
Cow position:
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 464-730
Cow position:
Alignm length: 275
Alignm identity: 199
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 115, 0

Conread position: 464-744
Cow position:
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 136

Conread position: 464-753
Cow position:
Alignm length: 294
Alignm identity: 209
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 123, 166

Conread position: 464-756
Cow position:
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 255

Conread position: 464-757
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 35, 68

Conread position: 464-766
Cow position:
Alignm length: 303
Alignm identity: 208
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 127, 0

Conread position: 464-772
Cow position:
Alignm length: 309
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 464-772
Cow position:
Alignm length: 334
Alignm identity: 224
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 123, 82

Conread position: 464-775
Cow position:
Alignm length: 316
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 124, 198

Conread position: 464-775
Cow position:
Alignm length: 319
Alignm identity: 212
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 115, 0

Conread position: 464-776
Cow position:
Alignm length: 323
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 173

Conread position: 464-777
Cow position:
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 142

Conread position: 464-777
Cow position:
Alignm length: 325
Alignm identity: 229
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 37, 225

Conread position: 464-777
Cow position:
Alignm length: 324
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 294

Conread position: 464-777
Cow position:
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 131

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 219

Conread position: 464-778
Cow position:
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 93

Conread position: 464-778
Cow position:
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 147

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 212

Conread position: 464-778
Cow position:
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 464-779
Cow position:
Alignm length: 341
Alignm identity: 242
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 127, 0

Conread position: 464-780
Cow position:
Alignm length: 321
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 464-780
Cow position:
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 148

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 0

Conread position: 465-778
Cow position:
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 57

Conread position: 465-780
Cow position:
Alignm length: 321
Alignm identity: 226
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 126, 199

Conread position: 466-587
Cow position:
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 467-709
Cow position:
Alignm length: 248
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 130, 0

Conread position: 468-778
Cow position:
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 471-780
Cow position:
Alignm length: 315
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 118, 43

Conread position: 475-646
Cow position:
Alignm length: 180
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 124, 39

Conread position: 493-780
Cow position:
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 503-771
Cow position:
Alignm length: 269
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 170, 0

Conread position: 505-770
Cow position:
Alignm length: 269
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 172

Conread position: 518-778
Cow position:
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 51

Conread position: 518-780
Cow position:
Alignm length: 264
Alignm identity: 188
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 143, 81

Conread position: 528-778
Cow position:
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 534-780
Cow position:
Alignm length: 255
Alignm identity: 177
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 53, 193

Conread position: 545-778
Cow position:
Alignm length: 243
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 0

Conread position: 550-780
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 63

Conread position: 550-780
Cow position:
Alignm length: 235
Alignm identity: 167
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 575-775
Cow position:
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 27

Conread position: 584-780
Cow position:
Alignm length: 200
Alignm identity: 150
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 6, 0

Conread position: 589-699
Cow position:
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 612-780
Cow position:
Alignm length: 173
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 96, 23

Conread position: 617-778
Cow position:
Alignm length: 166
Alignm identity: 135
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 48

Conread position: 625-775
Cow position:
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 10

Conread position: 628-780
Cow position:
Alignm length: 154
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 674-776
Cow position:
Alignm length: 104
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.