Cow genome map

Conread name: Ss1.1-Thy1-THY010066E12.5

Conread position: 1-343
Cow position:
Alignm length: 349
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 122

Conread position: 2-121
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 2-197
Cow position:
Alignm length: 197
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-206
Cow position:
Alignm length: 208
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 102

Conread position: 2-206
Cow position:
Alignm length: 206
Alignm identity: 148
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 128, 43

Conread position: 2-214
Cow position:
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 128, 77

Conread position: 2-292
Cow position:
Alignm length: 295
Alignm identity: 209
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 108

Conread position: 2-297
Cow position:
Alignm length: 308
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 86, 114

Conread position: 2-298
Cow position:
Alignm length: 300
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 204, 34

Conread position: 2-301
Cow position:
Alignm length: 302
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 30

Conread position: 2-309
Cow position:
Alignm length: 311
Alignm identity: 211
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 126, 7

Conread position: 2-310
Cow position:
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 68

Conread position: 2-312
Cow position:
Alignm length: 313
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 211

Conread position: 2-332
Cow position:
Alignm length: 332
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 266

Conread position: 2-335
Cow position:
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 321

Conread position: 2-343
Cow position:
Alignm length: 343
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 215

Conread position: 2-343
Cow position:
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 268

Conread position: 2-343
Cow position:
Alignm length: 345
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 106

Conread position: 2-358
Cow position:
Alignm length: 363
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 123

Conread position: 2-358
Cow position:
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 49

Conread position: 2-362
Cow position:
Alignm length: 366
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-362
Cow position:
Alignm length: 366
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 30

Conread position: 2-363
Cow position:
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 109

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 141

Conread position: 2-364
Cow position:
Alignm length: 367
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 202

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 233

Conread position: 2-364
Cow position:
Alignm length: 368
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 93

Conread position: 2-364
Cow position:
Alignm length: 371
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 2-364
Cow position:
Alignm length: 369
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 279

Conread position: 2-368
Cow position:
Alignm length: 372
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 7

Conread position: 2-379
Cow position:
Alignm length: 383
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 63

Conread position: 2-388
Cow position:
Alignm length: 395
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 30

Conread position: 2-390
Cow position:
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 277

Conread position: 2-454
Cow position:
Alignm length: 474
Alignm identity: 299
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 30

Conread position: 4-363
Cow position:
Alignm length: 365
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 4-364
Cow position:
Alignm length: 365
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 28

Conread position: 4-364
Cow position:
Alignm length: 366
Alignm identity: 242
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 61

Conread position: 6-343
Cow position:
Alignm length: 341
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 291

Conread position: 6-364
Cow position:
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 111

Conread position: 6-364
Cow position:
Alignm length: 367
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 8-287
Cow position:
Alignm length: 284
Alignm identity: 192
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 113

Conread position: 8-299
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 121, 30

Conread position: 9-364
Cow position:
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 60

Conread position: 11-363
Cow position:
Alignm length: 357
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 11

Conread position: 19-302
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 107, 125

Conread position: 23-185
Cow position:
Alignm length: 165
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 9

Conread position: 24-356
Cow position:
Alignm length: 338
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 27

Conread position: 31-343
Cow position:
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 79

Conread position: 46-364
Cow position:
Alignm length: 324
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 48-364
Cow position:
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 158

Conread position: 50-299
Cow position:
Alignm length: 252
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 164

Conread position: 55-364
Cow position:
Alignm length: 314
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 165, 13

Conread position: 60-342
Cow position:
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 129

Conread position: 70-367
Cow position:
Alignm length: 302
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 32

Conread position: 80-342
Cow position:
Alignm length: 265
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 48, 0

Conread position: 99-363
Cow position:
Alignm length: 270
Alignm identity: 197
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 53

Conread position: 103-237
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 111

Conread position: 119-364
Cow position:
Alignm length: 251
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 142-377
Cow position:
Alignm length: 243
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 78, 175

Conread position: 186-387
Cow position:
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 152

Conread position: 192-355
Cow position:
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 95

Conread position: 204-364
Cow position:
Alignm length: 164
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 141, 0

Conread position: 356-679
Cow position:
Alignm length: 335
Alignm identity: 217
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 41, 46

Conread position: 356-778
Cow position:
Alignm length: 437
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 64

Conread position: 442-780
Cow position:
Alignm length: 361
Alignm identity: 247
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 10, 101

Conread position: 447-650
Cow position:
Alignm length: 208
Alignm identity: 149
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 9

Conread position: 447-776
Cow position:
Alignm length: 332
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 148, 18

Conread position: 448-742
Cow position:
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 139, 9

Conread position: 456-581
Cow position:
Alignm length: 126
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 456-778
Cow position:
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 10

Conread position: 456-778
Cow position:
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 11

Conread position: 459-670
Cow position:
Alignm length: 219
Alignm identity: 159
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 8, 58

Conread position: 459-729
Cow position:
Alignm length: 276
Alignm identity: 194
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 6, 220

Conread position: 459-780
Cow position:
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 286

Conread position: 459-780
Cow position:
Alignm length: 329
Alignm identity: 224
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 6, 67

Conread position: 462-774
Cow position:
Alignm length: 321
Alignm identity: 220
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 35, 57

Conread position: 464-565
Cow position:
Alignm length: 102
Alignm identity: 85
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 464-639
Cow position:
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 130, 150

Conread position: 464-642
Cow position:
Alignm length: 184
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 124, 0

Conread position: 464-669
Cow position:
Alignm length: 213
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-770
Cow position:
Alignm length: 307
Alignm identity: 210
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 0

Conread position: 464-771
Cow position:
Alignm length: 312
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 36

Conread position: 464-774
Cow position:
Alignm length: 316
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 19

Conread position: 464-775
Cow position:
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-776
Cow position:
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 170

Conread position: 464-776
Cow position:
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 464-778
Cow position:
Alignm length: 323
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 108

Conread position: 464-778
Cow position:
Alignm length: 320
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 213

Conread position: 464-778
Cow position:
Alignm length: 320
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 464-778
Cow position:
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 37

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 212

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 115

Conread position: 464-778
Cow position:
Alignm length: 324
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 223

Conread position: 464-778
Cow position:
Alignm length: 319
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 464-778
Cow position:
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 254

Conread position: 464-778
Cow position:
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 302

Conread position: 464-779
Cow position:
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 259

Conread position: 464-780
Cow position:
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 140

Conread position: 464-780
Cow position:
Alignm length: 323
Alignm identity: 222
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 103, 73

Conread position: 465-739
Cow position:
Alignm length: 290
Alignm identity: 212
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 124, 222

Conread position: 465-778
Cow position:
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 45

Conread position: 465-778
Cow position:
Alignm length: 322
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 20

Conread position: 466-684
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 122, 49

Conread position: 466-687
Cow position:
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 187, 11

Conread position: 466-780
Cow position:
Alignm length: 319
Alignm identity: 214
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 111, 19

Conread position: 467-732
Cow position:
Alignm length: 268
Alignm identity: 178
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 116, 28

Conread position: 467-780
Cow position:
Alignm length: 320
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 257

Conread position: 468-775
Cow position:
Alignm length: 310
Alignm identity: 199
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 128, 143

Conread position: 469-780
Cow position:
Alignm length: 320
Alignm identity: 214
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 209

Conread position: 473-770
Cow position:
Alignm length: 303
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 226

Conread position: 474-780
Cow position:
Alignm length: 309
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 45

Conread position: 479-778
Cow position:
Alignm length: 304
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 36

Conread position: 484-778
Cow position:
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 12

Conread position: 498-780
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 83

Conread position: 509-780
Cow position:
Alignm length: 280
Alignm identity: 201
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 78, 96

Conread position: 511-778
Cow position:
Alignm length: 277
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 78, 145

Conread position: 519-778
Cow position:
Alignm length: 265
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 542-775
Cow position:
Alignm length: 237
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 71

Conread position: 560-742
Cow position:
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 575-780
Cow position:
Alignm length: 211
Alignm identity: 167
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 133

Conread position: 580-778
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 0

Conread position: 580-780
Cow position:
Alignm length: 202
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 8

Conread position: 620-778
Cow position:
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 0

Conread position: 638-780
Cow position:
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.