Cow genome map
Conread name: | Ss1.1-Thy1-THY010066E12.5 |
Conread position: | 2-87 |
Cow position: | chr25:35362042-35361957 (view UCSC Genome Browser custom track) |
Alignm length: | 86 |
Alignm identity: | 75 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-89 |
Cow position: | chr25:25507062-25507149 (view UCSC Genome Browser custom track) |
Alignm length: | 88 |
Alignm identity: | 77 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-96 |
Cow position: | chr25:33665286-33665193 (view UCSC Genome Browser custom track) |
Alignm length: | 95 |
Alignm identity: | 80 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 2-124 |
Cow position: | chr25:23344506-23344384 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 96 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-209 |
Cow position: | chr25:9544456-9544661 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 164 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 125, 28 |
Conread position: | 2-212 |
Cow position: | chr25:17560243-17560032 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 168 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 98 |
Conread position: | 2-281 |
Cow position: | chr25:11932708-11932430 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 135 |
Conread position: | 2-287 |
Cow position: | chr25:8675309-8675596 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-294 |
Cow position: | chr25:18889621-18889330 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 217 |
Conread position: | 2-299 |
Cow position: | chr25:19917471-19917770 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 2-302 |
Cow position: | chr25:18274588-18274289 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 268 |
Conread position: | 2-312 |
Cow position: | chr25:20775533-20775235 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 220 |
Conread position: | 2-314 |
Cow position: | chr25:18254585-18254280 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 217 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 48, 84 |
Conread position: | 2-330 |
Cow position: | chr25:33244656-33244965 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 230 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 184, 48 |
Conread position: | 2-330 |
Cow position: | chr25:40918766-40918440 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 232 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 48, 114 |
Conread position: | 2-335 |
Cow position: | chr25:18194711-18194378 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 135 |
Conread position: | 2-342 |
Cow position: | chr25:17589167-17588824 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 2-343 |
Cow position: | chr25:18175671-18176007 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 49 |
Conread position: | 2-343 |
Cow position: | chr25:18422421-18422751 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 242 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 48, 32 |
Conread position: | 2-345 |
Cow position: | chr25:24217037-24216692 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 235 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 128, 49 |
Conread position: | 2-350 |
Cow position: | chr25:12758695-12758354 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 233 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 127, 55 |
Conread position: | 2-358 |
Cow position: | chr25:18153044-18153397 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 241 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 38, 56 |
Conread position: | 2-358 |
Cow position: | chr25:34014093-34013728 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 2-363 |
Cow position: | chr25:6172290-6172656 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 2-363 |
Cow position: | chr25:13550643-13550277 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 2-363 |
Cow position: | chr25:24659647-24660002 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 54 |
Conread position: | 2-363 |
Cow position: | chr25:32580352-32580711 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 25 |
Conread position: | 2-364 |
Cow position: | chr25:12942306-12941929 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr25:13781424-13781791 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr25:18303795-18304151 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 208 |
Conread position: | 2-364 |
Cow position: | chr25:22147932-22148297 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 66 |
Conread position: | 2-364 |
Cow position: | chr25:26279640-26280001 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 159 |
Conread position: | 2-364 |
Cow position: | chr25:26879584-26879949 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 183 |
Conread position: | 2-364 |
Cow position: | chr25:27022176-27021827 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 99 |
Conread position: | 2-364 |
Cow position: | chr25:34346623-34346257 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 43 |
Conread position: | 6-133 |
Cow position: | chr25:18094598-18094724 (view UCSC Genome Browser custom track) |
Alignm length: | 129 |
Alignm identity: | 100 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 121, 7 |
Conread position: | 6-211 |
Cow position: | chr25:14958453-14958247 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 146 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 14, 180 |
Conread position: | 6-313 |
Cow position: | chr25:27365258-27365567 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 214 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 122, 32 |
Conread position: | 17-364 |
Cow position: | chr25:39558013-39557672 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 19 |
Conread position: | 20-328 |
Cow position: | chr25:8176939-8176634 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 211 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 36, 212 |
Conread position: | 23-299 |
Cow position: | chr25:18449669-18449950 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 187 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 107, 28 |
Conread position: | 23-364 |
Cow position: | chr25:20630045-20630387 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 200 |
Conread position: | 68-335 |
Cow position: | chr25:46205-46468 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 181 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 60, 99 |
Conread position: | 80-368 |
Cow position: | chr25:35022466-35022176 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 193 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 18, 27 |
Conread position: | 84-343 |
Cow position: | chr25:30265852-30266105 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 187 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 28, 67 |
Conread position: | 98-364 |
Cow position: | chr25:25507190-25507461 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 100-343 |
Cow position: | chr25:33664732-33664486 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 103 |
Conread position: | 205-364 |
Cow position: | chr25:17559950-17559794 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 128 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 139, 18 |
Conread position: | 320-774 |
Cow position: | chr25:18182498-18182967 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 315 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 7, 207 |
Conread position: | 362-778 |
Cow position: | chr25:26928121-26928553 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 309 |
Conread position: | 405-682 |
Cow position: | chr25:18252029-18251739 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 206 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 6, 12 |
Conread position: | 447-744 |
Cow position: | chr25:27525220-27524925 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 217 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 133, 69 |
Conread position: | 456-639 |
Cow position: | chr25:26880112-26880296 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 140 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 131, 10 |
Conread position: | 456-758 |
Cow position: | chr25:18305076-18305383 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 10 |
Conread position: | 456-768 |
Cow position: | chr25:24216532-24216227 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 229 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 31, 10 |
Conread position: | 464-731 |
Cow position: | chr25:12758153-12757879 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 107 |
Conread position: | 464-736 |
Cow position: | chr25:33259359-33259624 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 198 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 127, 38 |
Conread position: | 464-755 |
Cow position: | chr25:11831146-11830860 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 201 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 103, 70 |
Conread position: | 464-758 |
Cow position: | chr25:18450260-18450552 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 163 |
Conread position: | 464-771 |
Cow position: | chr25:30158409-30158094 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 209 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 21, 85 |
Conread position: | 464-776 |
Cow position: | chr25:18177632-18177946 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 252 |
Conread position: | 464-777 |
Cow position: | chr25:24659267-24658961 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 0 |
Conread position: | 464-778 |
Cow position: | chr25:12941737-12941419 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 21 |
Conread position: | 464-778 |
Cow position: | chr25:13781969-13782286 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 278 |
Conread position: | 464-778 |
Cow position: | chr25:18192828-18192509 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 0 |
Conread position: | 464-778 |
Cow position: | chr25:18273834-18273517 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 54 |
Conread position: | 464-778 |
Cow position: | chr25:18888808-18888489 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 0 |
Conread position: | 464-778 |
Cow position: | chr25:20630565-20630881 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 191 |
Conread position: | 464-778 |
Cow position: | chr25:22148475-22148789 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 213 |
Conread position: | 464-778 |
Cow position: | chr25:34346080-34345751 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 208 |
Conread position: | 464-780 |
Cow position: | chr25:17588621-17588302 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 184 |
Conread position: | 464-780 |
Cow position: | chr25:20774439-20774117 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 301 |
Conread position: | 464-780 |
Cow position: | chr25:27021649-27021331 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 0 |
Conread position: | 464-780 |
Cow position: | chr25:36636750-36636427 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 218 |
Conread position: | 465-778 |
Cow position: | chr25:17559615-17559308 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 192 |
Conread position: | 466-778 |
Cow position: | chr25:25507638-25507955 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 467-767 |
Cow position: | chr25:35087009-35086707 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 194 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 127, 136 |
Conread position: | 491-780 |
Cow position: | chr25:11931815-11931525 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 34 |
Conread position: | 517-780 |
Cow position: | chr25:15364944-15365207 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 55 |
Conread position: | 522-780 |
Cow position: | chr25:13454588-13454330 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 193 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 66, 128 |
Conread position: | 534-780 |
Cow position: | chr25:18212896-18212653 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 177 |
Alignm E-value: | 9e-32 |
Alignm gaps (pig, cow): | 60, 77 |
Conread position: | 537-779 |
Cow position: | chr25:19921545-19921785 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 174 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 82, 180 |
Conread position: | 548-778 |
Cow position: | chr25:34506670-34506436 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 65 |
Conread position: | 556-779 |
Cow position: | chr25:17655466-17655694 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 175 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 584-780 |
Cow position: | chr25:11041425-11041621 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 149 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 588-780 |
Cow position: | chr25:14957389-14957195 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 140 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 591-778 |
Cow position: | chr25:33576120-33575928 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 143 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 26, 119 |
Conread position: | 591-780 |
Cow position: | chr25:26899747-26899938 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 143 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.