Cow genome map
| Conread name: | Ss1.1-Thy1-THY010066E12.5 |
| Conread position: | 2-87 |
| Cow position: | |
| Alignm length: | 86 |
| Alignm identity: | 75 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-89 |
| Cow position: | |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-96 |
| Cow position: | |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-124 |
| Cow position: | |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-209 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 125, 28 |
| Conread position: | 2-212 |
| Cow position: | |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 98 |
| Conread position: | 2-281 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 2-287 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 2-294 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 217 |
| Conread position: | 2-299 |
| Cow position: | |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 2-302 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 268 |
| Conread position: | 2-312 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 220 |
| Conread position: | 2-314 |
| Cow position: | |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 2-330 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 48 |
| Conread position: | 2-330 |
| Cow position: | |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 2-335 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 135 |
| Conread position: | 2-342 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 2-343 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 49 |
| Conread position: | 2-343 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 2-345 |
| Cow position: | |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 2-350 |
| Cow position: | |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 2-358 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 56 |
| Conread position: | 2-358 |
| Cow position: | |
| Alignm length: | 366 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-363 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 2-363 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 2-363 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 54 |
| Conread position: | 2-363 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 369 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 208 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 159 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 183 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 2-364 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 6-133 |
| Cow position: | |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 7 |
| Conread position: | 6-211 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 180 |
| Conread position: | 6-313 |
| Cow position: | |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 17-364 |
| Cow position: | |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 20-328 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 36, 212 |
| Conread position: | 23-299 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 23-364 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 200 |
| Conread position: | 68-335 |
| Cow position: | |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 80-368 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 84-343 |
| Cow position: | |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 98-364 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 100-343 |
| Cow position: | |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 205-364 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 320-774 |
| Cow position: | |
| Alignm length: | 479 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 207 |
| Conread position: | 362-778 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 309 |
| Conread position: | 405-682 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 447-744 |
| Cow position: | |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 133, 69 |
| Conread position: | 456-639 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 456-758 |
| Cow position: | |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 10 |
| Conread position: | 456-768 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 464-731 |
| Cow position: | |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 107 |
| Conread position: | 464-736 |
| Cow position: | |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 464-755 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 464-758 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 163 |
| Conread position: | 464-771 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 464-776 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 252 |
| Conread position: | 464-777 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 278 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 191 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 213 |
| Conread position: | 464-778 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 208 |
| Conread position: | 464-780 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 184 |
| Conread position: | 464-780 |
| Cow position: | |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 301 |
| Conread position: | 464-780 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 464-780 |
| Cow position: | |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 218 |
| Conread position: | 465-778 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 192 |
| Conread position: | 466-778 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 467-767 |
| Cow position: | |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 491-780 |
| Cow position: | |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 517-780 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 522-780 |
| Cow position: | |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 534-780 |
| Cow position: | |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 537-779 |
| Cow position: | |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 82, 180 |
| Conread position: | 548-778 |
| Cow position: | |
| Alignm length: | 236 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 556-779 |
| Cow position: | |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 584-780 |
| Cow position: | |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-780 |
| Cow position: | |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 591-778 |
| Cow position: | |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 119 |
| Conread position: | 591-780 |
| Cow position: | |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.