Cow genome map

Conread name: Ss1.1-Thy1-THY010066E12.5

Conread position: 2-87
Cow position: chr25:35362042-35361957 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-89
Cow position: chr25:25507062-25507149 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-96
Cow position: chr25:33665286-33665193 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 2-124
Cow position: chr25:23344506-23344384 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-209
Cow position: chr25:9544456-9544661 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 125, 28

Conread position: 2-212
Cow position: chr25:17560243-17560032 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 98

Conread position: 2-281
Cow position: chr25:11932708-11932430 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 135

Conread position: 2-287
Cow position: chr25:8675309-8675596 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-294
Cow position: chr25:18889621-18889330 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 217

Conread position: 2-299
Cow position: chr25:19917471-19917770 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-302
Cow position: chr25:18274588-18274289 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 268

Conread position: 2-312
Cow position: chr25:20775533-20775235 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 220

Conread position: 2-314
Cow position: chr25:18254585-18254280 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 84

Conread position: 2-330
Cow position: chr25:33244656-33244965 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 184, 48

Conread position: 2-330
Cow position: chr25:40918766-40918440 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 114

Conread position: 2-335
Cow position: chr25:18194711-18194378 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 135

Conread position: 2-342
Cow position: chr25:17589167-17588824 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 2-343
Cow position: chr25:18175671-18176007 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 49

Conread position: 2-343
Cow position: chr25:18422421-18422751 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 48, 32

Conread position: 2-345
Cow position: chr25:24217037-24216692 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 235
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 128, 49

Conread position: 2-350
Cow position: chr25:12758695-12758354 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 127, 55

Conread position: 2-358
Cow position: chr25:18153044-18153397 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 56

Conread position: 2-358
Cow position: chr25:34014093-34013728 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 2-363
Cow position: chr25:6172290-6172656 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 2-363
Cow position: chr25:13550643-13550277 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-363
Cow position: chr25:24659647-24660002 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 54

Conread position: 2-363
Cow position: chr25:32580352-32580711 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 25

Conread position: 2-364
Cow position: chr25:12942306-12941929 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr25:13781424-13781791 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr25:18303795-18304151 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 208

Conread position: 2-364
Cow position: chr25:22147932-22148297 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 66

Conread position: 2-364
Cow position: chr25:26279640-26280001 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 159

Conread position: 2-364
Cow position: chr25:26879584-26879949 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 183

Conread position: 2-364
Cow position: chr25:27022176-27021827 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 99

Conread position: 2-364
Cow position: chr25:34346623-34346257 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 43

Conread position: 6-133
Cow position: chr25:18094598-18094724 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 7

Conread position: 6-211
Cow position: chr25:14958453-14958247 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 180

Conread position: 6-313
Cow position: chr25:27365258-27365567 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 32

Conread position: 17-364
Cow position: chr25:39558013-39557672 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 19

Conread position: 20-328
Cow position: chr25:8176939-8176634 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 36, 212

Conread position: 23-299
Cow position: chr25:18449669-18449950 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 28

Conread position: 23-364
Cow position: chr25:20630045-20630387 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 200

Conread position: 68-335
Cow position: chr25:46205-46468 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 99

Conread position: 80-368
Cow position: chr25:35022466-35022176 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 27

Conread position: 84-343
Cow position: chr25:30265852-30266105 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 67

Conread position: 98-364
Cow position: chr25:25507190-25507461 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 100-343
Cow position: chr25:33664732-33664486 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 103

Conread position: 205-364
Cow position: chr25:17559950-17559794 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 139, 18

Conread position: 320-774
Cow position: chr25:18182498-18182967 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 315
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 7, 207

Conread position: 362-778
Cow position: chr25:26928121-26928553 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 309

Conread position: 405-682
Cow position: chr25:18252029-18251739 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 12

Conread position: 447-744
Cow position: chr25:27525220-27524925 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 133, 69

Conread position: 456-639
Cow position: chr25:26880112-26880296 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 131, 10

Conread position: 456-758
Cow position: chr25:18305076-18305383 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 10

Conread position: 456-768
Cow position: chr25:24216532-24216227 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 31, 10

Conread position: 464-731
Cow position: chr25:12758153-12757879 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 107

Conread position: 464-736
Cow position: chr25:33259359-33259624 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 127, 38

Conread position: 464-755
Cow position: chr25:11831146-11830860 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 70

Conread position: 464-758
Cow position: chr25:18450260-18450552 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 163

Conread position: 464-771
Cow position: chr25:30158409-30158094 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 209
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 85

Conread position: 464-776
Cow position: chr25:18177632-18177946 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 252

Conread position: 464-777
Cow position: chr25:24659267-24658961 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 464-778
Cow position: chr25:12941737-12941419 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 21

Conread position: 464-778
Cow position: chr25:13781969-13782286 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 278

Conread position: 464-778
Cow position: chr25:18192828-18192509 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 464-778
Cow position: chr25:18273834-18273517 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 54

Conread position: 464-778
Cow position: chr25:18888808-18888489 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-778
Cow position: chr25:20630565-20630881 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 191

Conread position: 464-778
Cow position: chr25:22148475-22148789 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 213

Conread position: 464-778
Cow position: chr25:34346080-34345751 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 208

Conread position: 464-780
Cow position: chr25:17588621-17588302 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 184

Conread position: 464-780
Cow position: chr25:20774439-20774117 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 301

Conread position: 464-780
Cow position: chr25:27021649-27021331 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 464-780
Cow position: chr25:36636750-36636427 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 218

Conread position: 465-778
Cow position: chr25:17559615-17559308 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 192

Conread position: 466-778
Cow position: chr25:25507638-25507955 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 467-767
Cow position: chr25:35087009-35086707 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 194
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 127, 136

Conread position: 491-780
Cow position: chr25:11931815-11931525 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 517-780
Cow position: chr25:15364944-15365207 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 55

Conread position: 522-780
Cow position: chr25:13454588-13454330 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 66, 128

Conread position: 534-780
Cow position: chr25:18212896-18212653 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 60, 77

Conread position: 537-779
Cow position: chr25:19921545-19921785 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 82, 180

Conread position: 548-778
Cow position: chr25:34506670-34506436 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 556-779
Cow position: chr25:17655466-17655694 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 584-780
Cow position: chr25:11041425-11041621 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 588-780
Cow position: chr25:14957389-14957195 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 591-778
Cow position: chr25:33576120-33575928 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 119

Conread position: 591-780
Cow position: chr25:26899747-26899938 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.