Cow genome map
| Conread name: | Ss1.1-Thy1-THY010066E12.5 |
| Conread position: | 2-155 |
| Cow position: | chr26:18855496-18855651 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-164 |
| Cow position: | chr26:9113146-9113308 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-200 |
| Cow position: | chr26:11253648-11253450 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 2-259 |
| Cow position: | chr26:28084088-28084347 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 92 |
| Conread position: | 2-310 |
| Cow position: | chr26:20036514-20036824 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 2-311 |
| Cow position: | chr26:4806153-4805842 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 2-325 |
| Cow position: | chr26:32927214-32926893 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 2-328 |
| Cow position: | chr26:9844481-9844165 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 2-343 |
| Cow position: | chr26:15144352-15144009 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 2-343 |
| Cow position: | chr26:18852627-18852971 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-358 |
| Cow position: | chr26:12588157-12587796 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 2-363 |
| Cow position: | chr26:2199034-2199400 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 2-363 |
| Cow position: | chr26:3030420-3030054 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 2-364 |
| Cow position: | chr26:4333889-4333525 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 164 |
| Conread position: | 2-364 |
| Cow position: | chr26:4604782-4604407 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 2-364 |
| Cow position: | chr26:8870290-8870650 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 2-364 |
| Cow position: | chr26:9562942-9562577 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 2-364 |
| Cow position: | chr26:17396516-17396137 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 237 |
| Conread position: | 2-364 |
| Cow position: | chr26:19351099-19350737 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 187 |
| Conread position: | 2-364 |
| Cow position: | chr26:21826271-21825911 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 331 |
| Conread position: | 2-364 |
| Cow position: | chr26:30588958-30588591 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 2-364 |
| Cow position: | chr26:30783151-30783518 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 4-253 |
| Cow position: | chr26:17680372-17680119 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 4-295 |
| Cow position: | chr26:17996191-17995893 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-343 |
| Cow position: | chr26:8919260-8919584 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 203 |
| Conread position: | 4-364 |
| Cow position: | chr26:6849023-6848668 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 160 |
| Conread position: | 6-208 |
| Cow position: | chr26:11851775-11851978 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 18-363 |
| Cow position: | chr26:2351937-2351588 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 104-335 |
| Cow position: | chr26:26270265-26270496 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 154-364 |
| Cow position: | chr26:5675694-5675907 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 157-367 |
| Cow position: | chr26:21028711-21028920 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 191-388 |
| Cow position: | chr26:8083427-8083626 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 132 |
| Conread position: | 224-364 |
| Cow position: | chr26:14894576-14894719 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 356-778 |
| Cow position: | chr26:5675947-5676377 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 176 |
| Conread position: | 357-780 |
| Cow position: | chr26:3030009-3029574 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 360-640 |
| Cow position: | chr26:17995779-17995494 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 447-777 |
| Cow position: | chr26:1626914-1627258 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 459-762 |
| Cow position: | chr26:20264640-20264930 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 50 |
| Conread position: | 459-770 |
| Cow position: | chr26:8863327-8863022 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 459-780 |
| Cow position: | chr26:2199573-2199905 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 459-780 |
| Cow position: | chr26:8919778-8920105 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 272 |
| Conread position: | 463-670 |
| Cow position: | chr26:3864607-3864395 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 7 |
| Conread position: | 463-777 |
| Cow position: | chr26:17395960-17395642 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 150 |
| Conread position: | 464-670 |
| Cow position: | chr26:8870828-8871037 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 58 |
| Conread position: | 464-685 |
| Cow position: | chr26:4604228-4604001 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 464-745 |
| Cow position: | chr26:15143808-15143523 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 464-770 |
| Cow position: | chr26:16857155-16856856 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 464-777 |
| Cow position: | chr26:30783702-30784028 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 69, 146 |
| Conread position: | 464-778 |
| Cow position: | chr26:14894895-14895212 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 464-778 |
| Cow position: | chr26:18853173-18853491 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 464-778 |
| Cow position: | chr26:19350560-19350250 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 68 |
| Conread position: | 464-778 |
| Cow position: | chr26:30588417-30588097 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 464-780 |
| Cow position: | chr26:1087499-1087171 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 464-780 |
| Cow position: | chr26:12587613-12587289 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 316 |
| Conread position: | 465-774 |
| Cow position: | chr26:9843949-9843636 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 52 |
| Conread position: | 465-778 |
| Cow position: | chr26:6848489-6848173 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 296 |
| Conread position: | 466-778 |
| Cow position: | chr26:9561825-9561517 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 133 |
| Conread position: | 467-778 |
| Cow position: | chr26:21825729-21825415 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 470-774 |
| Cow position: | chr26:8614260-8613967 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 141, 48 |
| Conread position: | 474-769 |
| Cow position: | chr26:13195484-13195179 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 474-780 |
| Cow position: | chr26:2351398-2351084 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 476-705 |
| Cow position: | chr26:6806121-6805892 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 113, 85 |
| Conread position: | 499-778 |
| Cow position: | chr26:17325058-17325339 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 155 |
| Conread position: | 519-780 |
| Cow position: | chr26:32051936-32052200 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 214 |
| Conread position: | 564-778 |
| Cow position: | chr26:4328397-4328176 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 585-759 |
| Cow position: | chr26:8086248-8086420 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 604-770 |
| Cow position: | chr26:12666589-12666754 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 666-778 |
| Cow position: | chr26:34012831-34012943 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.