Cow genome map
Conread name: | Ss1.1-Thy1-THY010066E12.5 |
Conread position: | 2-169 |
Cow position: | chr27:28080649-28080810 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 131 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 125, 50 |
Conread position: | 2-170 |
Cow position: | chr27:1138735-1138898 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 123 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 125, 49 |
Conread position: | 2-232 |
Cow position: | chr27:22148422-22148650 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 163 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 121, 101 |
Conread position: | 2-256 |
Cow position: | chr27:3643892-3643633 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 178 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 47, 166 |
Conread position: | 2-263 |
Cow position: | chr27:15277717-15277455 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 110 |
Conread position: | 2-327 |
Cow position: | chr27:28891953-28892274 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 219 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 128, 49 |
Conread position: | 2-335 |
Cow position: | chr27:15638018-15637687 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 26 |
Conread position: | 2-335 |
Cow position: | chr27:16612566-16612237 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 223 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 55, 11 |
Conread position: | 2-364 |
Cow position: | chr27:893559-893926 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr27:1209703-1210068 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 114 |
Conread position: | 2-364 |
Cow position: | chr27:5911213-5911580 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr27:9330073-9330440 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr27:9992851-9992485 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 240 |
Conread position: | 2-364 |
Cow position: | chr27:15037240-15036875 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 255 |
Conread position: | 2-364 |
Cow position: | chr27:15046521-15046884 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 24 |
Conread position: | 2-364 |
Cow position: | chr27:16034049-16033682 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 2-364 |
Cow position: | chr27:23335515-23335877 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 217 |
Conread position: | 2-364 |
Cow position: | chr27:25804552-25804205 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 29 |
Conread position: | 2-364 |
Cow position: | chr27:26325418-26325785 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr27:26555316-26554950 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 266 |
Conread position: | 2-364 |
Cow position: | chr27:27663293-27663684 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 2-364 |
Cow position: | chr27:27752851-27752498 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 117 |
Conread position: | 2-364 |
Cow position: | chr27:28078795-28079156 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 54 |
Conread position: | 2-368 |
Cow position: | chr27:15541674-15542045 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 6-364 |
Cow position: | chr27:14460101-14459738 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 0 |
Conread position: | 9-225 |
Cow position: | chr27:27498946-27499159 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 156 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 120, 27 |
Conread position: | 38-343 |
Cow position: | chr27:15123321-15123622 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 209 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 90, 120 |
Conread position: | 49-356 |
Cow position: | chr27:27196210-27195909 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 227 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 10, 69 |
Conread position: | 54-298 |
Cow position: | chr27:17421954-17422190 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 166 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 74, 103 |
Conread position: | 149-364 |
Cow position: | chr27:3235044-3234824 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 172 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 181-364 |
Cow position: | chr27:11095332-11095519 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 152 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 244-363 |
Cow position: | chr27:30273615-30273493 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 103 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 356-618 |
Cow position: | chr27:26554906-26554627 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 206 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 69, 264 |
Conread position: | 356-780 |
Cow position: | chr27:21287117-21286683 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 155 |
Conread position: | 447-778 |
Cow position: | chr27:1210228-1210560 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 272 |
Conread position: | 456-778 |
Cow position: | chr27:9992317-9991992 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 9 |
Conread position: | 456-778 |
Cow position: | chr27:14459569-14459239 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 10 |
Conread position: | 459-780 |
Cow position: | chr27:1677687-1677374 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 140 |
Conread position: | 460-762 |
Cow position: | chr27:11095689-11095996 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 464-571 |
Cow position: | chr27:25804009-25803902 (view UCSC Genome Browser custom track) |
Alignm length: | 108 |
Alignm identity: | 90 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 464-645 |
Cow position: | chr27:5911758-5911944 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 141 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 123, 139 |
Conread position: | 464-681 |
Cow position: | chr27:27507038-27507264 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 162 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 115, 181 |
Conread position: | 464-691 |
Cow position: | chr27:23336050-23336289 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 186 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 124, 72 |
Conread position: | 464-732 |
Cow position: | chr27:15036700-15036431 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 9 |
Conread position: | 464-735 |
Cow position: | chr27:30273314-30273038 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 0 |
Conread position: | 464-776 |
Cow position: | chr27:27752222-27751890 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 464-778 |
Cow position: | chr27:3234651-3234328 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 464-778 |
Cow position: | chr27:13898211-13898529 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 148 |
Conread position: | 464-778 |
Cow position: | chr27:15636457-15636139 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 148 |
Conread position: | 464-780 |
Cow position: | chr27:16033502-16033196 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 222 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 184, 64 |
Conread position: | 466-756 |
Cow position: | chr27:26325965-26326259 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 281 |
Conread position: | 470-742 |
Cow position: | chr27:28079330-28079605 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 256 |
Conread position: | 472-773 |
Cow position: | chr27:28892495-28892799 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 202 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 124, 42 |
Conread position: | 474-777 |
Cow position: | chr27:9330632-9330938 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 247 |
Conread position: | 477-780 |
Cow position: | chr27:27414781-27415088 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 209 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 112, 128 |
Conread position: | 488-778 |
Cow position: | chr27:27663912-27664208 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 513-780 |
Cow position: | chr27:25057857-25058124 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 186 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 75, 194 |
Conread position: | 516-777 |
Cow position: | chr27:8568154-8568414 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 117 |
Conread position: | 524-777 |
Cow position: | chr27:11486264-11486517 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 184 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 65, 16 |
Conread position: | 528-772 |
Cow position: | chr27:2377475-2377711 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 170 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 67, 113 |
Conread position: | 558-764 |
Cow position: | chr27:12747817-12748025 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 165 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 30, 57 |
Conread position: | 605-777 |
Cow position: | chr27:6160966-6160793 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 127 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 16, 61 |
Conread position: | 616-778 |
Cow position: | chr27:15275018-15274857 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 133 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 646-778 |
Cow position: | chr27:26554322-26554191 (view UCSC Genome Browser custom track) |
Alignm length: | 133 |
Alignm identity: | 110 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 656-778 |
Cow position: | chr27:4980458-4980577 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 102 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 660-778 |
Cow position: | chr27:25803605-25803485 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 100 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.