Cow genome map

Conread name: Ss1.1-Thy1-THY010066E12.5

Conread position: 2-169
Cow position: chr27:28080649-28080810 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 125, 50

Conread position: 2-170
Cow position: chr27:1138735-1138898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 125, 49

Conread position: 2-232
Cow position: chr27:22148422-22148650 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 121, 101

Conread position: 2-256
Cow position: chr27:3643892-3643633 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 166

Conread position: 2-263
Cow position: chr27:15277717-15277455 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 110

Conread position: 2-327
Cow position: chr27:28891953-28892274 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 49

Conread position: 2-335
Cow position: chr27:15638018-15637687 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 26

Conread position: 2-335
Cow position: chr27:16612566-16612237 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 11

Conread position: 2-364
Cow position: chr27:893559-893926 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr27:1209703-1210068 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 114

Conread position: 2-364
Cow position: chr27:5911213-5911580 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr27:9330073-9330440 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr27:9992851-9992485 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 240

Conread position: 2-364
Cow position: chr27:15037240-15036875 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 255

Conread position: 2-364
Cow position: chr27:15046521-15046884 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 24

Conread position: 2-364
Cow position: chr27:16034049-16033682 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 2-364
Cow position: chr27:23335515-23335877 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 217

Conread position: 2-364
Cow position: chr27:25804552-25804205 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 29

Conread position: 2-364
Cow position: chr27:26325418-26325785 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr27:26555316-26554950 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 266

Conread position: 2-364
Cow position: chr27:27663293-27663684 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 2-364
Cow position: chr27:27752851-27752498 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 117

Conread position: 2-364
Cow position: chr27:28078795-28079156 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 54

Conread position: 2-368
Cow position: chr27:15541674-15542045 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 6-364
Cow position: chr27:14460101-14459738 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 9-225
Cow position: chr27:27498946-27499159 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 120, 27

Conread position: 38-343
Cow position: chr27:15123321-15123622 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 120

Conread position: 49-356
Cow position: chr27:27196210-27195909 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 69

Conread position: 54-298
Cow position: chr27:17421954-17422190 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 74, 103

Conread position: 149-364
Cow position: chr27:3235044-3234824 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 181-364
Cow position: chr27:11095332-11095519 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 152
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 244-363
Cow position: chr27:30273615-30273493 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 356-618
Cow position: chr27:26554906-26554627 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 69, 264

Conread position: 356-780
Cow position: chr27:21287117-21286683 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 155

Conread position: 447-778
Cow position: chr27:1210228-1210560 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 272

Conread position: 456-778
Cow position: chr27:9992317-9991992 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 9

Conread position: 456-778
Cow position: chr27:14459569-14459239 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 10

Conread position: 459-780
Cow position: chr27:1677687-1677374 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 140

Conread position: 460-762
Cow position: chr27:11095689-11095996 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 464-571
Cow position: chr27:25804009-25803902 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 464-645
Cow position: chr27:5911758-5911944 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 123, 139

Conread position: 464-681
Cow position: chr27:27507038-27507264 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 115, 181

Conread position: 464-691
Cow position: chr27:23336050-23336289 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 186
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 124, 72

Conread position: 464-732
Cow position: chr27:15036700-15036431 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 9

Conread position: 464-735
Cow position: chr27:30273314-30273038 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 464-776
Cow position: chr27:27752222-27751890 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 464-778
Cow position: chr27:3234651-3234328 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 464-778
Cow position: chr27:13898211-13898529 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 148

Conread position: 464-778
Cow position: chr27:15636457-15636139 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 148

Conread position: 464-780
Cow position: chr27:16033502-16033196 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 184, 64

Conread position: 466-756
Cow position: chr27:26325965-26326259 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 281

Conread position: 470-742
Cow position: chr27:28079330-28079605 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 256

Conread position: 472-773
Cow position: chr27:28892495-28892799 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 124, 42

Conread position: 474-777
Cow position: chr27:9330632-9330938 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 247

Conread position: 477-780
Cow position: chr27:27414781-27415088 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 112, 128

Conread position: 488-778
Cow position: chr27:27663912-27664208 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 513-780
Cow position: chr27:25057857-25058124 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 75, 194

Conread position: 516-777
Cow position: chr27:8568154-8568414 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 117

Conread position: 524-777
Cow position: chr27:11486264-11486517 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 65, 16

Conread position: 528-772
Cow position: chr27:2377475-2377711 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 113

Conread position: 558-764
Cow position: chr27:12747817-12748025 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 30, 57

Conread position: 605-777
Cow position: chr27:6160966-6160793 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 61

Conread position: 616-778
Cow position: chr27:15275018-15274857 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 116, 0

Conread position: 646-778
Cow position: chr27:26554322-26554191 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 656-778
Cow position: chr27:4980458-4980577 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 660-778
Cow position: chr27:25803605-25803485 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.