Cow genome map


           Conread name:
           Ss1.1-Thy1-THY010066E12.5
        

               Conread position:
               2-152
               

               Cow position:
               chr29:42650627-42650779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               2-178
               

               Cow position:
               chr29:410164-409988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               150
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 135
               

               Conread position:
               2-201
               

               Cow position:
               chr29:6266139-6265938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 87
               

               Conread position:
               2-216
               

               Cow position:
               chr29:16110771-16110986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               126, 21
               

               Conread position:
               2-263
               

               Cow position:
               chr29:19653470-19653740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               123, 29
               

               Conread position:
               2-285
               

               Cow position:
               chr29:42802487-42802772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 222
               

               Conread position:
               2-295
               

               Cow position:
               chr29:7844686-7844981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               2-300
               

               Cow position:
               chr29:13582423-13582716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 118
               

               Conread position:
               2-308
               

               Cow position:
               chr29:23976202-23976504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 25
               

               Conread position:
               2-309
               

               Cow position:
               chr29:32982716-32983031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               128, 25
               

               Conread position:
               2-310
               

               Cow position:
               chr29:802569-802265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               52, 21
               

               Conread position:
               2-329
               

               Cow position:
               chr29:15949188-15948872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               2-335
               

               Cow position:
               chr29:16174521-16174194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               116, 65
               

               Conread position:
               2-335
               

               Cow position:
               chr29:32540172-32540500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 30
               

               Conread position:
               2-343
               

               Cow position:
               chr29:9619778-9620121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               2-343
               

               Cow position:
               chr29:34925834-34926176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 115
               

               Conread position:
               2-357
               

               Cow position:
               chr29:669702-669343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 0
               

               Conread position:
               2-357
               

               Cow position:
               chr29:34799448-34799089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 199
               

               Conread position:
               2-361
               

               Cow position:
               chr29:8062134-8061767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               68, 63
               

               Conread position:
               2-361
               

               Cow position:
               chr29:16016417-16016057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 49
               

               Conread position:
               2-361
               

               Cow position:
               chr29:21426668-21426305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 276
               

               Conread position:
               2-363
               

               Cow position:
               chr29:610257-609894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 68
               

               Conread position:
               2-363
               

               Cow position:
               chr29:10823607-10823252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 116
               

               Conread position:
               2-363
               

               Cow position:
               chr29:15894495-15894129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               2-363
               

               Cow position:
               chr29:15968506-15968140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               2-363
               

               Cow position:
               chr29:18856588-18856223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 116
               

               Conread position:
               2-363
               

               Cow position:
               chr29:27249987-27249622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 17
               

               Conread position:
               2-363
               

               Cow position:
               chr29:27980568-27980204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 216
               

               Conread position:
               2-363
               

               Cow position:
               chr29:35297225-35297574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 260
               

               Conread position:
               2-364
               

               Cow position:
               chr29:48111-47745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 245
               

               Conread position:
               2-364
               

               Cow position:
               chr29:105388-105758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 162
               

               Conread position:
               2-364
               

               Cow position:
               chr29:2841011-2840655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 24
               

               Conread position:
               2-364
               

               Cow position:
               chr29:3177229-3176872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               127, 36
               

               Conread position:
               2-364
               

               Cow position:
               chr29:5982356-5981990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               2-364
               

               Cow position:
               chr29:7430857-7430495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 211
               

               Conread position:
               2-364
               

               Cow position:
               chr29:9643396-9643039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 30
               

               Conread position:
               2-364
               

               Cow position:
               chr29:10647889-10647528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 212
               

               Conread position:
               2-364
               

               Cow position:
               chr29:14085773-14085407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 260
               

               Conread position:
               2-364
               

               Cow position:
               chr29:14586277-14586645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-364
               

               Cow position:
               chr29:19885425-19885789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 55
               

               Conread position:
               2-364
               

               Cow position:
               chr29:20251520-20251887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-364
               

               Cow position:
               chr29:25932181-25931815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 135
               

               Conread position:
               2-364
               

               Cow position:
               chr29:26164461-26164104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 217
               

               Conread position:
               2-364
               

               Cow position:
               chr29:32584021-32583655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               51, 36
               

               Conread position:
               2-364
               

               Cow position:
               chr29:35263063-35263415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               57, 20
               

               Conread position:
               2-364
               

               Cow position:
               chr29:38227341-38227701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 217
               

               Conread position:
               2-364
               

               Cow position:
               chr29:39079349-39078983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 78
               

               Conread position:
               2-364
               

               Cow position:
               chr29:40502622-40502255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-364
               

               Cow position:
               chr29:43322916-43323282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 25
               

               Conread position:
               2-364
               

               Cow position:
               chr29:45460076-45460444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               2-364
               

               Cow position:
               chr29:45587006-45586639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-367
               

               Cow position:
               chr29:19597893-19597529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               57, 20
               

               Conread position:
               4-200
               

               Cow position:
               chr29:6212898-6213097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               4-364
               

               Cow position:
               chr29:16022894-16023261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               4-460
               

               Cow position:
               chr29:19622884-19622414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 265
               

               Conread position:
               6-364
               

               Cow position:
               chr29:2690266-2690629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               7-365
               

               Cow position:
               chr29:5957966-5958326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 130
               

               Conread position:
               9-221
               

               Cow position:
               chr29:2950892-2950690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               118, 27
               

               Conread position:
               10-204
               

               Cow position:
               chr29:3045996-3046189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               117, 58
               

               Conread position:
               12-358
               

               Cow position:
               chr29:2100217-2100567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 293
               

               Conread position:
               14-277
               

               Cow position:
               chr29:31870873-31870610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               112, 15
               

               Conread position:
               21-357
               

               Cow position:
               chr29:3698371-3698716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               29, 239
               

               Conread position:
               23-205
               

               Cow position:
               chr29:8775860-8775680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               103, 42
               

               Conread position:
               23-364
               

               Cow position:
               chr29:251150-251495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 238
               

               Conread position:
               36-343
               

               Cow position:
               chr29:31181794-31182102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 134
               

               Conread position:
               51-260
               

               Cow position:
               chr29:21459705-21459914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               76, 8
               

               Conread position:
               51-355
               

               Cow position:
               chr29:21264056-21264359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               17, 100
               

               Conread position:
               56-285
               

               Cow position:
               chr29:7086988-7087216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               70, 100
               

               Conread position:
               59-365
               

               Cow position:
               chr29:13574032-13573712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               69, 182
               

               Conread position:
               80-343
               

               Cow position:
               chr29:32559322-32559056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 194
               

               Conread position:
               120-363
               

               Cow position:
               chr29:16173854-16173601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 178
               

               Conread position:
               133-364
               

               Cow position:
               chr29:32803929-32804162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               73, 164
               

               Conread position:
               161-335
               

               Cow position:
               chr29:32891329-32891497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               167-314
               

               Cow position:
               chr29:27263177-27263033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               204-364
               

               Cow position:
               chr29:6265715-6265552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               208-377
               

               Cow position:
               chr29:2949773-2949602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               127, 162
               

               Conread position:
               224-364
               

               Cow position:
               chr29:8664104-8664246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               121, 113
               

               Conread position:
               224-372
               

               Cow position:
               chr29:15785381-15785231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               121, 144
               

               Conread position:
               234-363
               

               Cow position:
               chr29:38655058-38654926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               246-364
               

               Cow position:
               chr29:16110980-16111101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               255-363
               

               Cow position:
               chr29:35815365-35815254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               321-775
               

               Cow position:
               chr29:34873557-34874030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               315
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               353-454
               

               Cow position:
               chr29:646559-646660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               102
               

               Alignm identity:
               85
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               356-778
               

               Cow position:
               chr29:10823208-10822765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 390
               

               Conread position:
               360-778
               

               Cow position:
               chr29:16345009-16345425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               332, 39
               

               Conread position:
               442-778
               

               Cow position:
               chr29:34798931-34798591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 171
               

               Conread position:
               447-780
               

               Cow position:
               chr29:9620301-9620633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               456-780
               

               Cow position:
               chr29:13650950-13651270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 10
               

               Conread position:
               459-745
               

               Cow position:
               chr29:2100743-2101035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 117
               

               Conread position:
               459-777
               

               Cow position:
               chr29:32558859-32558540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               6, 185
               

               Conread position:
               459-780
               

               Cow position:
               chr29:7845276-7845607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               464-585
               

               Cow position:
               chr29:38208169-38208049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               464-640
               

               Cow position:
               chr29:2840477-2840294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               464-649
               

               Cow position:
               chr29:15967961-15967773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               123, 140
               

               Conread position:
               464-649
               

               Cow position:
               chr29:43791323-43791512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               464-677
               

               Cow position:
               chr29:9642861-9642640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               464-680
               

               Cow position:
               chr29:2949454-2949243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               121, 76
               

               Conread position:
               464-699
               

               Cow position:
               chr29:15946919-15946685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               123, 81
               

               Conread position:
               464-744
               

               Cow position:
               chr29:6265374-6265082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               464-746
               

               Cow position:
               chr29:40502080-40501797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 164
               

               Conread position:
               464-747
               

               Cow position:
               chr29:35263580-35263844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               464-769
               

               Cow position:
               chr29:801486-801191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               464-770
               

               Cow position:
               chr29:37165036-37165341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               55, 247
               

               Conread position:
               464-775
               

               Cow position:
               chr29:8664411-8664723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               102, 172
               

               Conread position:
               464-775
               

               Cow position:
               chr29:23977021-23977338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 239
               

               Conread position:
               464-775
               

               Cow position:
               chr29:27262994-27262684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 19
               

               Conread position:
               464-776
               

               Cow position:
               chr29:15997766-15997438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 270
               

               Conread position:
               464-777
               

               Cow position:
               chr29:646696-647007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               464-777
               

               Cow position:
               chr29:20252065-20252384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               464-777
               

               Cow position:
               chr29:38227878-38228195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 148
               

               Conread position:
               464-778
               

               Cow position:
               chr29:5958500-5958808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               464-778
               

               Cow position:
               chr29:7430318-7430000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               464-778
               

               Cow position:
               chr29:10647349-10647031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               464-778
               

               Cow position:
               chr29:14085228-14084911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 214
               

               Conread position:
               464-778
               

               Cow position:
               chr29:14210668-14210353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 300
               

               Conread position:
               464-778
               

               Cow position:
               chr29:14586821-14587136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 222
               

               Conread position:
               464-778
               

               Cow position:
               chr29:19622383-19622064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               464-778
               

               Cow position:
               chr29:19654529-19654845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 131
               

               Conread position:
               464-778
               

               Cow position:
               chr29:21426127-21425798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 44
               

               Conread position:
               464-778
               

               Cow position:
               chr29:26163929-26163618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 90
               

               Conread position:
               464-778
               

               Cow position:
               chr29:32287097-32287398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 10
               

               Conread position:
               464-778
               

               Cow position:
               chr29:32540994-32541313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               464-778
               

               Cow position:
               chr29:39078805-39078489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 256
               

               Conread position:
               464-778
               

               Cow position:
               chr29:43323458-43323776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 214
               

               Conread position:
               464-778
               

               Cow position:
               chr29:45205403-45205717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 102
               

               Conread position:
               464-778
               

               Cow position:
               chr29:45460624-45460960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 39
               

               Conread position:
               464-778
               

               Cow position:
               chr29:45586475-45586163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 148
               

               Conread position:
               464-779
               

               Cow position:
               chr29:14448805-14449114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 60
               

               Conread position:
               464-779
               

               Cow position:
               chr29:32891696-32892009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 50
               

               Conread position:
               464-780
               

               Cow position:
               chr29:669158-668850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               228
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               123, 191
               

               Conread position:
               464-780
               

               Cow position:
               chr29:3176507-3176201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               145, 39
               

               Conread position:
               464-780
               

               Cow position:
               chr29:16111278-16111606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 224
               

               Conread position:
               464-780
               

               Cow position:
               chr29:19885967-19886296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               64, 272
               

               Conread position:
               464-780
               

               Cow position:
               chr29:27980024-27979705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 261
               

               Conread position:
               464-780
               

               Cow position:
               chr29:31096481-31096162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 58
               

               Conread position:
               464-780
               

               Cow position:
               chr29:31182304-31182624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 93
               

               Conread position:
               464-780
               

               Cow position:
               chr29:35297733-35298037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               124, 190
               

               Conread position:
               464-780
               

               Cow position:
               chr29:35815075-35814755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               465-777
               

               Cow position:
               chr29:5981813-5981492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               465-777
               

               Cow position:
               chr29:25931639-25931313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               465-778
               

               Cow position:
               chr29:2747530-2747222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 109
               

               Conread position:
               465-778
               

               Cow position:
               chr29:42803312-42803629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 173
               

               Conread position:
               466-682
               

               Cow position:
               chr29:43408718-43408502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               121, 47
               

               Conread position:
               466-746
               

               Cow position:
               chr29:38237623-38237332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               468-585
               

               Cow position:
               chr29:34926382-34926499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               468-683
               

               Cow position:
               chr29:13920709-13920489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               468-775
               

               Cow position:
               chr29:6213430-6213736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               118, 22
               

               Conread position:
               468-780
               

               Cow position:
               chr29:18856046-18855730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               469-780
               

               Cow position:
               chr29:609719-609424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               119, 35
               

               Conread position:
               469-780
               

               Cow position:
               chr29:13582985-13583299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 114
               

               Conread position:
               470-767
               

               Cow position:
               chr29:251653-251954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               123, 44
               

               Conread position:
               474-706
               

               Cow position:
               chr29:8061216-8060980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               474-778
               

               Cow position:
               chr29:47527-47220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 259
               

               Conread position:
               482-778
               

               Cow position:
               chr29:2465949-2465638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               61, 282
               

               Conread position:
               503-597
               

               Cow position:
               chr29:32641298-32641392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               81
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               503-764
               

               Cow position:
               chr29:16023509-16023774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               504-780
               

               Cow position:
               chr29:13622905-13622637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               83, 151
               

               Conread position:
               523-780
               

               Cow position:
               chr29:37609156-37608898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               88, 46
               

               Conread position:
               531-775
               

               Cow position:
               chr29:34525209-34525455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               60, 195
               

               Conread position:
               538-780
               

               Cow position:
               chr29:42939225-42938976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               539-758
               

               Cow position:
               chr29:34754200-34754415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               53, 35
               

               Conread position:
               586-777
               

               Cow position:
               chr29:10849778-10849969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               586-780
               

               Cow position:
               chr29:3328359-3328554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               586-780
               

               Cow position:
               chr29:38207650-38207455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               626-778
               

               Cow position:
               chr29:2840273-2840127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 22
               

               Conread position:
               656-778
               

               Cow position:
               chr29:5236113-5236235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.