Cow genome map
| Conread name: | Ss1.1-Thy1-THY010070D09.5 |
| Conread position: | 266-480 |
| Cow position: | chr29:22339524-22339300 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 279-456 |
| Cow position: | chr29:39111603-39111431 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 281-452 |
| Cow position: | chr29:1933852-1933677 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 281-459 |
| Cow position: | chr29:2071860-2071687 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 292-457 |
| Cow position: | chr29:11915531-11915705 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 330-609 |
| Cow position: | chr29:7965999-7966310 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 333-460 |
| Cow position: | chr29:22720884-22721018 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 333-611 |
| Cow position: | chr29:36183032-36183347 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 334-456 |
| Cow position: | chr29:4065845-4065970 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 334-461 |
| Cow position: | chr29:28775697-28775574 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 334-463 |
| Cow position: | chr29:2744515-2744381 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 334-468 |
| Cow position: | chr29:37961220-37961082 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 334-612 |
| Cow position: | chr29:37599447-37599149 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 195 |
| Conread position: | 335-455 |
| Cow position: | chr29:10456794-10456676 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 335-476 |
| Cow position: | chr29:42939595-42939450 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 336-467 |
| Cow position: | chr29:16735246-16735107 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 337-462 |
| Cow position: | chr29:18735882-18735750 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 337-462 |
| Cow position: | chr29:35677782-35677660 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 337-464 |
| Cow position: | chr29:9139169-9139302 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 337-471 |
| Cow position: | chr29:35459009-35458875 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 337-496 |
| Cow position: | chr29:4890833-4890670 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 30, 137 |
| Conread position: | 337-573 |
| Cow position: | chr29:20178363-20178113 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 337-583 |
| Cow position: | chr29:18695018-18695284 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 188 |
| Conread position: | 337-612 |
| Cow position: | chr29:36530624-36530934 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 198 |
| Conread position: | 338-454 |
| Cow position: | chr29:18878739-18878619 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 338-455 |
| Cow position: | chr29:45588711-45588590 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 338-462 |
| Cow position: | chr29:465640-465507 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 338-462 |
| Cow position: | chr29:699853-699729 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 338-462 |
| Cow position: | chr29:15944331-15944460 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 338-462 |
| Cow position: | chr29:21933351-21933225 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 338-462 |
| Cow position: | chr29:36586340-36586469 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 338-463 |
| Cow position: | chr29:21236878-21237008 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 338-478 |
| Cow position: | chr29:13615881-13615739 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 90, 128 |
| Conread position: | 338-480 |
| Cow position: | chr29:2188575-2188432 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 338-491 |
| Cow position: | chr29:1307102-1306944 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 338-491 |
| Cow position: | chr29:41747202-41747358 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 338-609 |
| Cow position: | chr29:26130545-26130837 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 174 |
| Conread position: | 338-616 |
| Cow position: | chr29:23578014-23577717 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 338-616 |
| Cow position: | chr29:34297803-34297497 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 199 |
| Conread position: | 339-454 |
| Cow position: | chr29:4120608-4120725 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 339-460 |
| Cow position: | chr29:868535-868661 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 339-460 |
| Cow position: | chr29:13458821-13458946 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 339-462 |
| Cow position: | chr29:20674043-20673912 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 339-467 |
| Cow position: | chr29:585044-585173 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 339-467 |
| Cow position: | chr29:4367483-4367615 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 339-468 |
| Cow position: | chr29:24952448-24952584 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 339-476 |
| Cow position: | chr29:477865-478009 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 132 |
| Conread position: | 339-491 |
| Cow position: | chr29:12005002-12004847 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 339-497 |
| Cow position: | chr29:21265497-21265658 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 339-581 |
| Cow position: | chr29:44236228-44236482 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 195 |
| Conread position: | 339-604 |
| Cow position: | chr29:18212220-18211939 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 339-612 |
| Cow position: | chr29:109472-109754 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 185 |
| Conread position: | 339-612 |
| Cow position: | chr29:35501886-35501587 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 339-612 |
| Cow position: | chr29:36216880-36217179 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 339-612 |
| Cow position: | chr29:39567450-39567749 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 204 |
| Conread position: | 339-613 |
| Cow position: | chr29:34744854-34744557 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 339-616 |
| Cow position: | chr29:6844867-6844561 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 237 |
| Conread position: | 339-616 |
| Cow position: | chr29:28674923-28674634 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 339-616 |
| Cow position: | chr29:41530612-41530921 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 340-458 |
| Cow position: | chr29:38760393-38760271 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 340-464 |
| Cow position: | chr29:19601576-19601448 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 340-612 |
| Cow position: | chr29:19762036-19762335 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 208 |
| Conread position: | 342-442 |
| Cow position: | chr29:19338745-19338853 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-455 |
| Cow position: | chr29:11562380-11562498 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-456 |
| Cow position: | chr29:6775219-6775106 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 342-456 |
| Cow position: | chr29:21665736-21665854 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-456 |
| Cow position: | chr29:22162485-22162369 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 342-456 |
| Cow position: | chr29:24103783-24103661 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 342-456 |
| Cow position: | chr29:25737650-25737534 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 342-456 |
| Cow position: | chr29:26615959-26615838 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-456 |
| Cow position: | chr29:40902953-40902836 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 342-457 |
| Cow position: | chr29:29066192-29066311 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-458 |
| Cow position: | chr29:3395876-3395992 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 342-458 |
| Cow position: | chr29:5046508-5046392 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 342-459 |
| Cow position: | chr29:31926524-31926403 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 342-459 |
| Cow position: | chr29:32308557-32308436 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 342-461 |
| Cow position: | chr29:2984650-2984773 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-461 |
| Cow position: | chr29:23984197-23984070 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-463 |
| Cow position: | chr29:11696300-11696421 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 342-463 |
| Cow position: | chr29:22714962-22714833 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-464 |
| Cow position: | chr29:3704438-3704312 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-464 |
| Cow position: | chr29:13553898-13554028 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-467 |
| Cow position: | chr29:25474673-25474806 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-468 |
| Cow position: | chr29:11684778-11684904 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 342-468 |
| Cow position: | chr29:31928745-31928877 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 342-476 |
| Cow position: | chr29:28280765-28280625 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-493 |
| Cow position: | chr29:686426-686268 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-495 |
| Cow position: | chr29:13040786-13040631 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 342-496 |
| Cow position: | chr29:6014869-6015028 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 342-497 |
| Cow position: | chr29:798689-798530 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 141 |
| Conread position: | 342-504 |
| Cow position: | chr29:17409095-17409262 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 342-508 |
| Cow position: | chr29:23743273-23743111 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 83 |
| Conread position: | 342-514 |
| Cow position: | chr29:32290368-32290545 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-531 |
| Cow position: | chr29:29121475-29121287 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 342-570 |
| Cow position: | chr29:35738504-35738254 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 199 |
| Conread position: | 342-572 |
| Cow position: | chr29:18748821-18748582 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 342-578 |
| Cow position: | chr29:356092-356347 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-578 |
| Cow position: | chr29:9686235-9685981 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 342-581 |
| Cow position: | chr29:7408123-7407870 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-583 |
| Cow position: | chr29:24119971-24119709 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 190 |
| Conread position: | 342-584 |
| Cow position: | chr29:9938304-9938047 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 342-601 |
| Cow position: | chr29:28949874-28950133 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 342-606 |
| Cow position: | chr29:12784189-12783902 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 156 |
| Conread position: | 342-607 |
| Cow position: | chr29:4328200-4328473 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 118, 74 |
| Conread position: | 342-608 |
| Cow position: | chr29:4520101-4520399 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-610 |
| Cow position: | chr29:707179-706891 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 105, 84 |
| Conread position: | 342-610 |
| Cow position: | chr29:19756214-19756499 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 342-612 |
| Cow position: | chr29:6925785-6926072 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 342-612 |
| Cow position: | chr29:8926693-8926394 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 188 |
| Conread position: | 342-612 |
| Cow position: | chr29:9911943-9912243 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 342-612 |
| Cow position: | chr29:13028223-13028507 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 342-612 |
| Cow position: | chr29:16309516-16309810 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 342-612 |
| Cow position: | chr29:17109737-17110024 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 342-612 |
| Cow position: | chr29:17668261-17668554 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 194 |
| Conread position: | 342-612 |
| Cow position: | chr29:19949075-19949374 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-612 |
| Cow position: | chr29:20903522-20903223 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 258 |
| Conread position: | 342-612 |
| Cow position: | chr29:24578642-24578930 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 342-612 |
| Cow position: | chr29:26263617-26263903 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 342-612 |
| Cow position: | chr29:30367257-30366999 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 168, 24 |
| Conread position: | 342-612 |
| Cow position: | chr29:37719676-37719953 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 105 |
| Conread position: | 342-613 |
| Cow position: | chr29:28868398-28868711 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 342-613 |
| Cow position: | chr29:29056950-29057243 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 342-616 |
| Cow position: | chr29:5892612-5892916 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 342-616 |
| Cow position: | chr29:9638546-9638249 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 342-616 |
| Cow position: | chr29:11704888-11705183 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 200 |
| Conread position: | 342-616 |
| Cow position: | chr29:16195618-16195911 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 181 |
| Conread position: | 342-616 |
| Cow position: | chr29:25088519-25088814 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 229 |
| Conread position: | 343-455 |
| Cow position: | chr29:3502824-3502936 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 343-456 |
| Cow position: | chr29:43252921-43252803 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 343-460 |
| Cow position: | chr29:87253-87130 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 343-460 |
| Cow position: | chr29:40891935-40891810 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 343-462 |
| Cow position: | chr29:19254056-19253933 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 343-475 |
| Cow position: | chr29:21443577-21443442 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 127 |
| Conread position: | 343-609 |
| Cow position: | chr29:17338-17048 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 343-609 |
| Cow position: | chr29:94782-94505 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 343-612 |
| Cow position: | chr29:6635871-6636147 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 343-616 |
| Cow position: | chr29:40299243-40298949 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 344-455 |
| Cow position: | chr29:5098994-5098877 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 344-493 |
| Cow position: | chr29:23697746-23697897 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 344-568 |
| Cow position: | chr29:26734801-26735045 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 344-612 |
| Cow position: | chr29:7956216-7955923 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 344-612 |
| Cow position: | chr29:28195749-28195454 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 344-633 |
| Cow position: | chr29:43495827-43496127 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 346-458 |
| Cow position: | chr29:22175460-22175573 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 346-581 |
| Cow position: | chr29:39642946-39643205 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 346-612 |
| Cow position: | chr29:10653117-10653399 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 352-491 |
| Cow position: | chr29:3711162-3711304 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 353-617 |
| Cow position: | chr29:23155027-23155298 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 355-616 |
| Cow position: | chr29:22936058-22936341 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 367-494 |
| Cow position: | chr29:4405896-4405764 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 368-612 |
| Cow position: | chr29:38580768-38581046 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 368-616 |
| Cow position: | chr29:41364902-41365180 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 256 |
| Conread position: | 371-612 |
| Cow position: | chr29:27873435-27873668 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 152, 42 |
| Conread position: | 379-612 |
| Cow position: | chr29:28979676-28979435 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 138, 83 |
| Conread position: | 411-575 |
| Cow position: | chr29:29295727-29295896 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 449-612 |
| Cow position: | chr29:1325343-1325506 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 468-612 |
| Cow position: | chr29:8005006-8004860 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 478-609 |
| Cow position: | chr29:8669293-8669423 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 478-612 |
| Cow position: | chr29:12025542-12025408 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 117 |
| Conread position: | 484-612 |
| Cow position: | chr29:40583727-40583853 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 484-616 |
| Cow position: | chr29:11915754-11915891 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 526-612 |
| Cow position: | chr29:40791284-40791370 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.