Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-155 |
| Cow position: | chr1:85400517-85400671 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 1-192 |
| Cow position: | chr1:100029801-100029610 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 47 |
| Conread position: | 1-193 |
| Cow position: | chr1:96298673-96298862 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 1-201 |
| Cow position: | chr1:44229819-44229618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 158 |
| Conread position: | 1-207 |
| Cow position: | chr1:17292256-17292467 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 161 |
| Conread position: | 1-207 |
| Cow position: | chr1:89931667-89931462 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 1-210 |
| Cow position: | chr1:38068881-38069089 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 1-221 |
| Cow position: | chr1:81356690-81356913 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 124, 158 |
| Conread position: | 1-227 |
| Cow position: | chr1:2532510-2532739 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 78 |
| Conread position: | 1-250 |
| Cow position: | chr1:57636216-57635962 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 1-250 |
| Cow position: | chr1:74886491-74886245 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 1-251 |
| Cow position: | chr1:71081244-71081493 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-267 |
| Cow position: | chr1:41515463-41515745 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-267 |
| Cow position: | chr1:53371972-53371698 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 1-279 |
| Cow position: | chr1:84100430-84100712 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 93 |
| Conread position: | 1-291 |
| Cow position: | chr1:99752803-99752513 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 1-295 |
| Cow position: | chr1:51313186-51313478 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 125, 58 |
| Conread position: | 1-315 |
| Cow position: | chr1:50258090-50257774 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 1-325 |
| Cow position: | chr1:50939418-50939748 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 57 |
| Conread position: | 1-331 |
| Cow position: | chr1:52539643-52539978 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 127, 80 |
| Conread position: | 1-331 |
| Cow position: | chr1:87938678-87939014 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 1-333 |
| Cow position: | chr1:50371457-50371798 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 87, 66 |
| Conread position: | 1-333 |
| Cow position: | chr1:73554848-73554504 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 166 |
| Conread position: | 1-333 |
| Cow position: | chr1:84252232-84252556 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 1-333 |
| Cow position: | chr1:89263005-89263349 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 171 |
| Conread position: | 1-333 |
| Cow position: | chr1:93413255-93413594 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1-333 |
| Cow position: | chr1:96183060-96183398 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 1-334 |
| Cow position: | chr1:58528874-58528535 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 1-337 |
| Cow position: | chr1:5364586-5364242 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 1-337 |
| Cow position: | chr1:44701190-44701519 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 1-337 |
| Cow position: | chr1:64945549-64945884 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 1-337 |
| Cow position: | chr1:71976974-71976636 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 171, 63 |
| Conread position: | 1-337 |
| Cow position: | chr1:79421306-79421636 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 124, 37 |
| Conread position: | 1-338 |
| Cow position: | chr1:34859003-34859349 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-338 |
| Cow position: | chr1:79296408-79296060 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 1-346 |
| Cow position: | chr1:71978487-71978140 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 2-167 |
| Cow position: | chr1:96095898-96095731 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 2-273 |
| Cow position: | chr1:59013794-59014061 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 8 |
| Conread position: | 2-333 |
| Cow position: | chr1:27943288-27943626 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 78 |
| Conread position: | 2-337 |
| Cow position: | chr1:54390531-54390865 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 2-337 |
| Cow position: | chr1:64698682-64698337 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 3-255 |
| Cow position: | chr1:86705739-86705485 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 156 |
| Conread position: | 3-292 |
| Cow position: | chr1:85529821-85530111 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 157 |
| Conread position: | 3-327 |
| Cow position: | chr1:37299397-37299717 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 206, 33 |
| Conread position: | 3-328 |
| Cow position: | chr1:3012216-3012529 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 3-331 |
| Cow position: | chr1:31756273-31755946 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 3-337 |
| Cow position: | chr1:14571176-14571518 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 3-338 |
| Cow position: | chr1:46803098-46802760 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 4-206 |
| Cow position: | chr1:91956545-91956345 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 4-301 |
| Cow position: | chr1:78055819-78056138 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 4-335 |
| Cow position: | chr1:85323807-85323490 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 6-206 |
| Cow position: | chr1:55918732-55918933 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 6-264 |
| Cow position: | chr1:55203309-55203574 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 6-306 |
| Cow position: | chr1:98789448-98789145 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 6-333 |
| Cow position: | chr1:57743643-57743978 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 7-259 |
| Cow position: | chr1:20867012-20867266 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 119, 68 |
| Conread position: | 8-247 |
| Cow position: | chr1:93783583-93783347 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 11-251 |
| Cow position: | chr1:73509988-73510233 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 11-333 |
| Cow position: | chr1:69211133-69211457 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 11-343 |
| Cow position: | chr1:23578218-23578552 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 114, 75 |
| Conread position: | 12-181 |
| Cow position: | chr1:2600110-2600276 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 68 |
| Conread position: | 12-187 |
| Cow position: | chr1:6335128-6335306 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 157 |
| Conread position: | 12-190 |
| Cow position: | chr1:85142622-85142801 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 12-193 |
| Cow position: | chr1:21300022-21300208 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 116, 144 |
| Conread position: | 12-205 |
| Cow position: | chr1:73017878-73018070 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 12-207 |
| Cow position: | chr1:44836924-44837121 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 149 |
| Conread position: | 12-207 |
| Cow position: | chr1:92881254-92881455 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 12-233 |
| Cow position: | chr1:44376192-44375971 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 149 |
| Conread position: | 12-242 |
| Cow position: | chr1:94475149-94475382 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 116, 144 |
| Conread position: | 12-249 |
| Cow position: | chr1:4226588-4226349 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 12-251 |
| Cow position: | chr1:69865861-69865619 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 12-255 |
| Cow position: | chr1:23117615-23117861 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 148 |
| Conread position: | 12-255 |
| Cow position: | chr1:61097093-61096847 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 12-265 |
| Cow position: | chr1:25088086-25088335 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 12-266 |
| Cow position: | chr1:95765792-95766044 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 12-292 |
| Cow position: | chr1:100340002-100340284 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 194, 21 |
| Conread position: | 12-302 |
| Cow position: | chr1:5420221-5420519 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 12-332 |
| Cow position: | chr1:36528755-36528430 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 12-333 |
| Cow position: | chr1:39249846-39250176 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 12-333 |
| Cow position: | chr1:42875067-42875392 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 12-333 |
| Cow position: | chr1:68812340-68812654 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 112, 63 |
| Conread position: | 12-336 |
| Cow position: | chr1:37435425-37435752 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 12-337 |
| Cow position: | chr1:34363231-34362909 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 111, 74 |
| Conread position: | 12-338 |
| Cow position: | chr1:81102466-81102147 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 12-338 |
| Cow position: | chr1:81765816-81766142 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 113, 69 |
| Conread position: | 13-333 |
| Cow position: | chr1:41093536-41093866 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 113, 143 |
| Conread position: | 13-337 |
| Cow position: | chr1:42821559-42821231 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 13-338 |
| Cow position: | chr1:50618688-50619017 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 117, 51 |
| Conread position: | 14-328 |
| Cow position: | chr1:25119695-25120010 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 110, 53 |
| Conread position: | 14-333 |
| Cow position: | chr1:7200694-7200370 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 14-338 |
| Cow position: | chr1:56857419-56857094 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 14-338 |
| Cow position: | chr1:102595448-102595129 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 149 |
| Conread position: | 15-312 |
| Cow position: | chr1:78940678-78940969 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 15-333 |
| Cow position: | chr1:64717303-64717628 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 15-346 |
| Cow position: | chr1:57120241-57120580 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 16-251 |
| Cow position: | chr1:87473130-87473368 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 17-186 |
| Cow position: | chr1:32913091-32912920 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 17-336 |
| Cow position: | chr1:64274549-64274234 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 19-183 |
| Cow position: | chr1:12899242-12899407 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 140 |
| Conread position: | 21-270 |
| Cow position: | chr1:40496110-40495870 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 224, 87 |
| Conread position: | 21-295 |
| Cow position: | chr1:31316895-31317172 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 21-335 |
| Cow position: | chr1:89139-88814 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 42, 139 |
| Conread position: | 21-344 |
| Cow position: | chr1:14627742-14627410 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 108, 59 |
| Conread position: | 23-333 |
| Cow position: | chr1:61221012-61220696 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 23-333 |
| Cow position: | chr1:71016786-71017083 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 172, 44 |
| Conread position: | 24-207 |
| Cow position: | chr1:33442609-33442798 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 24-255 |
| Cow position: | chr1:87830825-87830597 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 24-333 |
| Cow position: | chr1:53650230-53649916 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 24-333 |
| Cow position: | chr1:96324771-96325066 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 179, 40 |
| Conread position: | 24-336 |
| Cow position: | chr1:87451078-87451391 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 26-248 |
| Cow position: | chr1:41974285-41974509 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 28-207 |
| Cow position: | chr1:9438719-9438894 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 28-286 |
| Cow position: | chr1:54116820-54116556 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 28-288 |
| Cow position: | chr1:97062327-97062603 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 30-246 |
| Cow position: | chr1:99211155-99211371 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 126 |
| Conread position: | 31-274 |
| Cow position: | chr1:73846977-73847220 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 35-207 |
| Cow position: | chr1:56232219-56232044 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 36-357 |
| Cow position: | chr1:56450828-56450484 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 40-304 |
| Cow position: | chr1:30234303-30234036 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 40-337 |
| Cow position: | chr1:1257844-1257548 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 41-204 |
| Cow position: | chr1:58515563-58515400 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 42-337 |
| Cow position: | chr1:62526427-62526134 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 45-285 |
| Cow position: | chr1:88393050-88393292 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 45-330 |
| Cow position: | chr1:37541752-37542040 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 45-338 |
| Cow position: | chr1:56652777-56653070 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 50-337 |
| Cow position: | chr1:74039397-74039676 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 193, 14 |
| Conread position: | 51-338 |
| Cow position: | chr1:86993362-86993073 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 56-333 |
| Cow position: | chr1:93948114-93948397 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 57-321 |
| Cow position: | chr1:78832433-78832165 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 75-338 |
| Cow position: | chr1:65031290-65031554 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 76-316 |
| Cow position: | chr1:31263974-31264208 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 77-322 |
| Cow position: | chr1:70986055-70986301 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 146, 87 |
| Conread position: | 80-337 |
| Cow position: | chr1:88023852-88024103 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 81-333 |
| Cow position: | chr1:23638189-23638429 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 82-333 |
| Cow position: | chr1:31814537-31814279 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 82-345 |
| Cow position: | chr1:32624807-32624536 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 84-337 |
| Cow position: | chr1:65726174-65726433 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 87-337 |
| Cow position: | chr1:10704624-10704874 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 94-333 |
| Cow position: | chr1:61536214-61536453 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 99-337 |
| Cow position: | chr1:624482-624727 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 104-339 |
| Cow position: | chr1:2369279-2369520 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 128-337 |
| Cow position: | chr1:62795671-62795464 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 140-333 |
| Cow position: | chr1:35246786-35246587 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 141-338 |
| Cow position: | chr1:41974784-41974986 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 144-336 |
| Cow position: | chr1:19261147-19260956 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 337-799 |
| Cow position: | chr1:38396358-38396794 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 338-539 |
| Cow position: | chr1:99020831-99020624 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 338-731 |
| Cow position: | chr1:98865024-98864622 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 340-542 |
| Cow position: | chr1:39481852-39481641 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 341-551 |
| Cow position: | chr1:44138213-44137998 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 5 |
| Conread position: | 341-776 |
| Cow position: | chr1:77655833-77656276 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 341-798 |
| Cow position: | chr1:44101614-44101166 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 347-800 |
| Cow position: | chr1:31422122-31421702 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 350-776 |
| Cow position: | chr1:80555933-80555517 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 356-718 |
| Cow position: | chr1:63501602-63501982 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 49 |
Show alignments to all cow chromosomes.