Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-193 |
| Cow position: | chr11:42230633-42230450 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 1-201 |
| Cow position: | chr11:44644194-44644392 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 1-211 |
| Cow position: | chr11:59801056-59800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 62, 80 |
| Conread position: | 1-255 |
| Cow position: | chr11:9295590-9295845 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 1-265 |
| Cow position: | chr11:57643389-57643650 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-270 |
| Cow position: | chr11:15249582-15249847 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 1-271 |
| Cow position: | chr11:13534312-13534585 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-273 |
| Cow position: | chr11:71303244-71302964 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 1-274 |
| Cow position: | chr11:35569974-35570239 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 1-299 |
| Cow position: | chr11:21460109-21459812 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 57 |
| Conread position: | 1-300 |
| Cow position: | chr11:16685647-16685352 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 127, 80 |
| Conread position: | 1-301 |
| Cow position: | chr11:2721004-2721306 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 1-301 |
| Cow position: | chr11:4246705-4246399 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 1-327 |
| Cow position: | chr11:18756100-18755776 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 47 |
| Conread position: | 1-327 |
| Cow position: | chr11:33862835-33863169 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 1-328 |
| Cow position: | chr11:12118519-12118177 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 1-331 |
| Cow position: | chr11:76969961-76970296 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 206, 35 |
| Conread position: | 1-333 |
| Cow position: | chr11:2950842-2951161 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 1-333 |
| Cow position: | chr11:28672594-28672930 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 1-333 |
| Cow position: | chr11:49236708-49237040 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 1-336 |
| Cow position: | chr11:15653746-15653408 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 127, 66 |
| Conread position: | 1-337 |
| Cow position: | chr11:12112197-12111850 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 1-337 |
| Cow position: | chr11:13454014-13454342 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 1-337 |
| Cow position: | chr11:47158532-47158861 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 1-337 |
| Cow position: | chr11:53855793-53855460 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 1-337 |
| Cow position: | chr11:56459297-56459628 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 1-337 |
| Cow position: | chr11:60170564-60170207 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 180 |
| Conread position: | 1-337 |
| Cow position: | chr11:63844066-63844418 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 1-338 |
| Cow position: | chr11:21846369-21846706 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 1-345 |
| Cow position: | chr11:9870772-9870415 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 163 |
| Conread position: | 2-311 |
| Cow position: | chr11:47086870-47087165 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 2-328 |
| Cow position: | chr11:40350798-40351128 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 2-331 |
| Cow position: | chr11:52564946-52564602 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 50 |
| Conread position: | 2-332 |
| Cow position: | chr11:53307639-53307968 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 126, 78 |
| Conread position: | 2-336 |
| Cow position: | chr11:35232079-35231750 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 122, 62 |
| Conread position: | 3-251 |
| Cow position: | chr11:9196961-9197207 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 3-311 |
| Cow position: | chr11:62873452-62873762 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 122, 138 |
| Conread position: | 3-327 |
| Cow position: | chr11:12179237-12178909 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 146 |
| Conread position: | 3-330 |
| Cow position: | chr11:43996828-43997165 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 3-337 |
| Cow position: | chr11:2322626-2322964 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 3-337 |
| Cow position: | chr11:49486128-49485792 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 3-337 |
| Cow position: | chr11:75360569-75360916 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 101 |
| Conread position: | 3-338 |
| Cow position: | chr11:63479116-63478773 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 3-338 |
| Cow position: | chr11:77436775-77436453 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 207, 41 |
| Conread position: | 4-207 |
| Cow position: | chr11:42380692-42380495 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 4-248 |
| Cow position: | chr11:44621992-44621756 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 4-315 |
| Cow position: | chr11:9560972-9561285 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 4-337 |
| Cow position: | chr11:3787195-3787501 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 241, 59 |
| Conread position: | 5-186 |
| Cow position: | chr11:35761723-35761905 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 123, 152 |
| Conread position: | 6-261 |
| Cow position: | chr11:49037159-49037410 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 6-295 |
| Cow position: | chr11:67388460-67388181 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 10-320 |
| Cow position: | chr11:51423172-51423493 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 11-208 |
| Cow position: | chr11:17200915-17201113 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 117, 148 |
| Conread position: | 11-337 |
| Cow position: | chr11:34458048-34457723 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 121, 64 |
| Conread position: | 12-207 |
| Cow position: | chr11:33001127-33000933 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 113, 147 |
| Conread position: | 12-207 |
| Cow position: | chr11:42793681-42793876 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 134 |
| Conread position: | 12-255 |
| Cow position: | chr11:53280143-53280390 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 207 |
| Conread position: | 12-271 |
| Cow position: | chr11:76603157-76602891 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 73, 155 |
| Conread position: | 12-274 |
| Cow position: | chr11:67744636-67744368 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 12-278 |
| Cow position: | chr11:77194513-77194785 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 12-284 |
| Cow position: | chr11:29013448-29013178 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 46 |
| Conread position: | 12-302 |
| Cow position: | chr11:44529306-44529021 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 12-306 |
| Cow position: | chr11:19490803-19490495 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 12-314 |
| Cow position: | chr11:58211138-58211447 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 12-322 |
| Cow position: | chr11:9972177-9972476 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 12-325 |
| Cow position: | chr11:64477922-64478232 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 117, 68 |
| Conread position: | 12-333 |
| Cow position: | chr11:3264080-3263751 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 12-333 |
| Cow position: | chr11:46032496-46032823 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 12-333 |
| Cow position: | chr11:76566718-76566391 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 12-337 |
| Cow position: | chr11:61485565-61485890 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 114, 65 |
| Conread position: | 12-337 |
| Cow position: | chr11:62574739-62575062 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 222, 54 |
| Conread position: | 12-344 |
| Cow position: | chr11:18926038-18925700 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 14-273 |
| Cow position: | chr11:11857962-11857695 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 14-328 |
| Cow position: | chr11:1284872-1285190 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 14-334 |
| Cow position: | chr11:70194851-70195175 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 14-337 |
| Cow position: | chr11:17453313-17452989 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 227 |
| Conread position: | 15-207 |
| Cow position: | chr11:4060700-4060893 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 144 |
| Conread position: | 15-207 |
| Cow position: | chr11:58816848-58816656 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 15-250 |
| Cow position: | chr11:48428393-48428155 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 15-333 |
| Cow position: | chr11:3230574-3230251 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 15-333 |
| Cow position: | chr11:8241854-8242177 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 17-271 |
| Cow position: | chr11:67435427-67435674 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 17-338 |
| Cow position: | chr11:46027693-46027376 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 21-249 |
| Cow position: | chr11:54202476-54202710 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 21-273 |
| Cow position: | chr11:61665900-61665651 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 21-319 |
| Cow position: | chr11:44873679-44873370 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 21-329 |
| Cow position: | chr11:26655840-26655544 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 21-333 |
| Cow position: | chr11:9714891-9715210 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 21-333 |
| Cow position: | chr11:18437112-18437434 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 21-333 |
| Cow position: | chr11:31893182-31892869 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 21-337 |
| Cow position: | chr11:27833507-27833832 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 22-265 |
| Cow position: | chr11:52589725-52589969 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 22-328 |
| Cow position: | chr11:75552549-75552857 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 22-342 |
| Cow position: | chr11:13861449-13861765 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 23-337 |
| Cow position: | chr11:30258161-30258468 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 24-193 |
| Cow position: | chr11:45839647-45839817 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 24-206 |
| Cow position: | chr11:67746656-67746473 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 135 |
| Conread position: | 24-207 |
| Cow position: | chr11:28394316-28394130 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 24-275 |
| Cow position: | chr11:46777055-46777303 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 135 |
| Conread position: | 26-332 |
| Cow position: | chr11:12544430-12544134 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 27-336 |
| Cow position: | chr11:34609178-34608862 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 30-233 |
| Cow position: | chr11:74191898-74192097 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 37-333 |
| Cow position: | chr11:15942092-15942387 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 38-273 |
| Cow position: | chr11:1080809-1080589 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 29 |
| Conread position: | 38-333 |
| Cow position: | chr11:62870942-62871242 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 40-306 |
| Cow position: | chr11:4883478-4883747 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 48-317 |
| Cow position: | chr11:75256122-75255848 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 48-331 |
| Cow position: | chr11:20573022-20573314 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 51-328 |
| Cow position: | chr11:13589083-13589363 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 57-304 |
| Cow position: | chr11:74711065-74710811 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 61-322 |
| Cow position: | chr11:30225887-30226152 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 68-252 |
| Cow position: | chr11:77029067-77028878 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 70-339 |
| Cow position: | chr11:36452708-36452978 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 75-299 |
| Cow position: | chr11:69168444-69168203 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 75-323 |
| Cow position: | chr11:58790179-58789925 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 93 |
| Conread position: | 80-319 |
| Cow position: | chr11:19706126-19705888 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 80-336 |
| Cow position: | chr11:36453481-36453742 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 80-337 |
| Cow position: | chr11:81653088-81653341 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 77 |
| Conread position: | 81-330 |
| Cow position: | chr11:20804675-20804931 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 81-337 |
| Cow position: | chr11:45550307-45550048 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 83-337 |
| Cow position: | chr11:20696350-20696087 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 83-359 |
| Cow position: | chr11:40362377-40362657 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 84-309 |
| Cow position: | chr11:76666881-76667107 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 128, 74 |
| Conread position: | 84-338 |
| Cow position: | chr11:41098224-41098466 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 89-344 |
| Cow position: | chr11:67254137-67253874 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 90-333 |
| Cow position: | chr11:16118770-16119015 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 100-295 |
| Cow position: | chr11:54091957-54091759 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 115-338 |
| Cow position: | chr11:42210685-42210459 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 128-315 |
| Cow position: | chr11:8820337-8820142 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 130-333 |
| Cow position: | chr11:84751577-84751373 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 335-798 |
| Cow position: | chr11:44230904-44231367 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 337-798 |
| Cow position: | chr11:30187086-30187529 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 338-804 |
| Cow position: | chr11:36761878-36762332 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 437-799 |
| Cow position: | chr11:13067154-13066811 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 437-799 |
| Cow position: | chr11:13162850-13163199 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 452-590 |
| Cow position: | chr11:9415230-9415091 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 555-798 |
| Cow position: | chr11:36713480-36713250 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 139, 18 |
Show alignments to all cow chromosomes.