Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-193
Cow position:
Alignm length: 194
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 65

Conread position: 1-201
Cow position:
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 50

Conread position: 1-211
Cow position:
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 62, 80

Conread position: 1-255
Cow position:
Alignm length: 261
Alignm identity: 178
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 80

Conread position: 1-265
Cow position:
Alignm length: 270
Alignm identity: 188
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 124, 63

Conread position: 1-270
Cow position:
Alignm length: 275
Alignm identity: 188
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 124, 70

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 124, 63

Conread position: 1-273
Cow position:
Alignm length: 283
Alignm identity: 193
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 74

Conread position: 1-274
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 124, 32

Conread position: 1-299
Cow position:
Alignm length: 304
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 57

Conread position: 1-300
Cow position:
Alignm length: 304
Alignm identity: 204
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 127, 80

Conread position: 1-301
Cow position:
Alignm length: 311
Alignm identity: 217
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 97, 24

Conread position: 1-301
Cow position:
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 97, 24

Conread position: 1-327
Cow position:
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 1-327
Cow position:
Alignm length: 337
Alignm identity: 233
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 21, 148

Conread position: 1-328
Cow position:
Alignm length: 349
Alignm identity: 234
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 26

Conread position: 1-331
Cow position:
Alignm length: 341
Alignm identity: 233
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 206, 35

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 233
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 124, 66

Conread position: 1-333
Cow position:
Alignm length: 350
Alignm identity: 240
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 86

Conread position: 1-333
Cow position:
Alignm length: 339
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 86, 46

Conread position: 1-336
Cow position:
Alignm length: 345
Alignm identity: 234
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 127, 66

Conread position: 1-337
Cow position:
Alignm length: 352
Alignm identity: 225
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 59

Conread position: 1-337
Cow position:
Alignm length: 344
Alignm identity: 232
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 140, 88

Conread position: 1-337
Cow position:
Alignm length: 345
Alignm identity: 236
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 29, 21

Conread position: 1-337
Cow position:
Alignm length: 346
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 66

Conread position: 1-337
Cow position:
Alignm length: 342
Alignm identity: 231
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 128, 41

Conread position: 1-337
Cow position:
Alignm length: 362
Alignm identity: 249
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 66, 180

Conread position: 1-337
Cow position:
Alignm length: 356
Alignm identity: 239
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 8

Conread position: 1-338
Cow position:
Alignm length: 349
Alignm identity: 228
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 165, 25

Conread position: 1-345
Cow position:
Alignm length: 359
Alignm identity: 230
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 163

Conread position: 2-311
Cow position:
Alignm length: 313
Alignm identity: 211
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 127, 53

Conread position: 2-328
Cow position:
Alignm length: 336
Alignm identity: 232
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 124, 62

Conread position: 2-331
Cow position:
Alignm length: 349
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 126, 50

Conread position: 2-332
Cow position:
Alignm length: 336
Alignm identity: 227
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 126, 78

Conread position: 2-336
Cow position:
Alignm length: 337
Alignm identity: 225
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 122, 62

Conread position: 3-251
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 52

Conread position: 3-311
Cow position:
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 122, 138

Conread position: 3-327
Cow position:
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 122, 146

Conread position: 3-330
Cow position:
Alignm length: 342
Alignm identity: 239
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 67, 61

Conread position: 3-337
Cow position:
Alignm length: 347
Alignm identity: 239
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 79, 48

Conread position: 3-337
Cow position:
Alignm length: 341
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 62

Conread position: 3-337
Cow position:
Alignm length: 352
Alignm identity: 238
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 83, 101

Conread position: 3-338
Cow position:
Alignm length: 347
Alignm identity: 220
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 64

Conread position: 3-338
Cow position:
Alignm length: 344
Alignm identity: 232
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 207, 41

Conread position: 4-207
Cow position:
Alignm length: 206
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 63

Conread position: 4-248
Cow position:
Alignm length: 248
Alignm identity: 174
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 57

Conread position: 4-315
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 12, 40

Conread position: 4-337
Cow position:
Alignm length: 338
Alignm identity: 227
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 241, 59

Conread position: 5-186
Cow position:
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 123, 152

Conread position: 6-261
Cow position:
Alignm length: 262
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 58

Conread position: 6-295
Cow position:
Alignm length: 295
Alignm identity: 198
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 120, 58

Conread position: 10-320
Cow position:
Alignm length: 331
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 19

Conread position: 11-208
Cow position:
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 117, 148

Conread position: 11-337
Cow position:
Alignm length: 332
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 121, 64

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 113, 147

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 114, 134

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 166
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 207

Conread position: 12-271
Cow position:
Alignm length: 268
Alignm identity: 174
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 73, 155

Conread position: 12-274
Cow position:
Alignm length: 271
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 26

Conread position: 12-278
Cow position:
Alignm length: 278
Alignm identity: 192
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 62

Conread position: 12-284
Cow position:
Alignm length: 283
Alignm identity: 191
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 114, 46

Conread position: 12-302
Cow position:
Alignm length: 297
Alignm identity: 202
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 116, 55

Conread position: 12-306
Cow position:
Alignm length: 311
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 153

Conread position: 12-314
Cow position:
Alignm length: 313
Alignm identity: 212
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 73, 151

Conread position: 12-322
Cow position:
Alignm length: 319
Alignm identity: 215
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 61, 126

Conread position: 12-325
Cow position:
Alignm length: 322
Alignm identity: 210
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 117, 68

Conread position: 12-333
Cow position:
Alignm length: 335
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 157

Conread position: 12-333
Cow position:
Alignm length: 334
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 120, 52

Conread position: 12-333
Cow position:
Alignm length: 334
Alignm identity: 228
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 113, 63

Conread position: 12-337
Cow position:
Alignm length: 332
Alignm identity: 232
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 114, 65

Conread position: 12-337
Cow position:
Alignm length: 330
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 222, 54

Conread position: 12-344
Cow position:
Alignm length: 341
Alignm identity: 233
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 52, 147

Conread position: 14-273
Cow position:
Alignm length: 270
Alignm identity: 194
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 56, 62

Conread position: 14-328
Cow position:
Alignm length: 326
Alignm identity: 228
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 88, 37

Conread position: 14-334
Cow position:
Alignm length: 330
Alignm identity: 221
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 70, 53

Conread position: 14-337
Cow position:
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 227

Conread position: 15-207
Cow position:
Alignm length: 195
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 144

Conread position: 15-207
Cow position:
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 65

Conread position: 15-250
Cow position:
Alignm length: 243
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 49

Conread position: 15-333
Cow position:
Alignm length: 327
Alignm identity: 212
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 145

Conread position: 15-333
Cow position:
Alignm length: 327
Alignm identity: 209
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 40

Conread position: 17-271
Cow position:
Alignm length: 261
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 28

Conread position: 17-338
Cow position:
Alignm length: 328
Alignm identity: 221
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 115, 33

Conread position: 21-249
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 141

Conread position: 21-273
Cow position:
Alignm length: 262
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 43

Conread position: 21-319
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 63, 139

Conread position: 21-329
Cow position:
Alignm length: 311
Alignm identity: 208
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 46

Conread position: 21-333
Cow position:
Alignm length: 320
Alignm identity: 199
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 0

Conread position: 21-333
Cow position:
Alignm length: 326
Alignm identity: 212
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 84, 77

Conread position: 21-333
Cow position:
Alignm length: 322
Alignm identity: 227
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 105, 58

Conread position: 21-337
Cow position:
Alignm length: 330
Alignm identity: 231
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 48, 43

Conread position: 22-265
Cow position:
Alignm length: 249
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 57

Conread position: 22-328
Cow position:
Alignm length: 318
Alignm identity: 211
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 43, 121

Conread position: 22-342
Cow position:
Alignm length: 329
Alignm identity: 219
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 44

Conread position: 23-337
Cow position:
Alignm length: 321
Alignm identity: 218
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 105, 35

Conread position: 24-193
Cow position:
Alignm length: 172
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 135

Conread position: 24-206
Cow position:
Alignm length: 185
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 135

Conread position: 24-207
Cow position:
Alignm length: 189
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 57, 97

Conread position: 24-275
Cow position:
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 135

Conread position: 26-332
Cow position:
Alignm length: 314
Alignm identity: 210
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 25

Conread position: 27-336
Cow position:
Alignm length: 321
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 98, 48

Conread position: 30-233
Cow position:
Alignm length: 207
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 70

Conread position: 37-333
Cow position:
Alignm length: 300
Alignm identity: 206
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 91, 59

Conread position: 38-273
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 29

Conread position: 38-333
Cow position:
Alignm length: 303
Alignm identity: 194
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 36, 50

Conread position: 40-306
Cow position:
Alignm length: 275
Alignm identity: 182
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 84, 28

Conread position: 48-317
Cow position:
Alignm length: 279
Alignm identity: 190
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 74, 44

Conread position: 48-331
Cow position:
Alignm length: 296
Alignm identity: 195
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 16

Conread position: 51-328
Cow position:
Alignm length: 286
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 17

Conread position: 57-304
Cow position:
Alignm length: 259
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 31

Conread position: 61-322
Cow position:
Alignm length: 272
Alignm identity: 185
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 65, 11

Conread position: 68-252
Cow position:
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 92

Conread position: 70-339
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 89

Conread position: 75-299
Cow position:
Alignm length: 243
Alignm identity: 173
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 149

Conread position: 75-323
Cow position:
Alignm length: 259
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 93

Conread position: 80-319
Cow position:
Alignm length: 244
Alignm identity: 165
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 81

Conread position: 80-336
Cow position:
Alignm length: 265
Alignm identity: 177
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 130, 59

Conread position: 80-337
Cow position:
Alignm length: 259
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 77

Conread position: 81-330
Cow position:
Alignm length: 260
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 93

Conread position: 81-337
Cow position:
Alignm length: 264
Alignm identity: 185
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 26

Conread position: 83-337
Cow position:
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 89

Conread position: 83-359
Cow position:
Alignm length: 286
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 84

Conread position: 84-309
Cow position:
Alignm length: 230
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 128, 74

Conread position: 84-338
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 41, 75

Conread position: 89-344
Cow position:
Alignm length: 266
Alignm identity: 178
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 39, 71

Conread position: 90-333
Cow position:
Alignm length: 253
Alignm identity: 170
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 70

Conread position: 100-295
Cow position:
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 160, 58

Conread position: 115-338
Cow position:
Alignm length: 232
Alignm identity: 167
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 45

Conread position: 128-315
Cow position:
Alignm length: 197
Alignm identity: 139
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 30

Conread position: 130-333
Cow position:
Alignm length: 208
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 79, 9

Conread position: 335-798
Cow position:
Alignm length: 478
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 78

Conread position: 337-798
Cow position:
Alignm length: 468
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 9

Conread position: 338-804
Cow position:
Alignm length: 480
Alignm identity: 325
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 17

Conread position: 437-799
Cow position:
Alignm length: 366
Alignm identity: 258
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 55, 10

Conread position: 437-799
Cow position:
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 10

Conread position: 452-590
Cow position:
Alignm length: 141
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 30, 52

Conread position: 555-798
Cow position:
Alignm length: 245
Alignm identity: 169
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 139, 18

Show alignments to all cow chromosomes.