Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-204 |
| Cow position: | chr12:40356959-40357165 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 1-206 |
| Cow position: | chr12:22214141-22214339 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 124, 71 |
| Conread position: | 1-206 |
| Cow position: | chr12:39824904-39825096 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 1-207 |
| Cow position: | chr12:38774639-38774436 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 165 |
| Conread position: | 1-233 |
| Cow position: | chr12:5905081-5904846 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 1-242 |
| Cow position: | chr12:26367690-26367454 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 1-284 |
| Cow position: | chr12:38107120-38106831 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 68, 161 |
| Conread position: | 1-290 |
| Cow position: | chr12:7076966-7077252 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 1-294 |
| Cow position: | chr12:12177685-12177987 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 164 |
| Conread position: | 1-333 |
| Cow position: | chr12:6665306-6665658 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 1-333 |
| Cow position: | chr12:28840359-28840019 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 124, 97 |
| Conread position: | 1-336 |
| Cow position: | chr12:4655566-4655899 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 66 |
| Conread position: | 1-338 |
| Cow position: | chr12:6627837-6627516 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 207, 35 |
| Conread position: | 1-344 |
| Cow position: | chr12:19453079-19452732 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 2-302 |
| Cow position: | chr12:4011292-4010981 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 3-337 |
| Cow position: | chr12:10402844-10403186 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 5-315 |
| Cow position: | chr12:27048712-27048408 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 238, 20 |
| Conread position: | 6-207 |
| Cow position: | chr12:35345110-35345308 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 10-338 |
| Cow position: | chr12:39416350-39416035 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 11-219 |
| Cow position: | chr12:35248714-35248922 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 11-317 |
| Cow position: | chr12:19188411-19188099 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 47 |
| Conread position: | 11-337 |
| Cow position: | chr12:9406176-9406509 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 119, 156 |
| Conread position: | 12-231 |
| Cow position: | chr12:35482538-35482316 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-252 |
| Cow position: | chr12:22566860-22566615 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 12-272 |
| Cow position: | chr12:19254106-19254379 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 112, 177 |
| Conread position: | 12-312 |
| Cow position: | chr12:14852722-14853030 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 12-331 |
| Cow position: | chr12:10638217-10637913 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 12-332 |
| Cow position: | chr12:12296100-12295772 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 12-337 |
| Cow position: | chr12:15231566-15231241 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 197, 101 |
| Conread position: | 13-292 |
| Cow position: | chr12:47487158-47487443 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 14-331 |
| Cow position: | chr12:6551133-6550812 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 14-336 |
| Cow position: | chr12:4717786-4717463 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 19-207 |
| Cow position: | chr12:14522908-14522721 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 21-204 |
| Cow position: | chr12:43103351-43103158 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 21-247 |
| Cow position: | chr12:22134374-22134149 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 191, 43 |
| Conread position: | 21-251 |
| Cow position: | chr12:45175201-45175427 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 21-255 |
| Cow position: | chr12:8642279-8642047 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 21-331 |
| Cow position: | chr12:41463238-41463568 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 80 |
| Conread position: | 21-338 |
| Cow position: | chr12:23944693-23944372 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 21-338 |
| Cow position: | chr12:39135929-39136250 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 22-315 |
| Cow position: | chr12:19713930-19714228 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 39-251 |
| Cow position: | chr12:21229774-21229992 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 40-272 |
| Cow position: | chr12:13260152-13259913 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 40-331 |
| Cow position: | chr12:31217688-31217398 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 47-325 |
| Cow position: | chr12:7171451-7171739 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 58-242 |
| Cow position: | chr12:20610624-20610437 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 71-336 |
| Cow position: | chr12:36572593-36572863 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 71-337 |
| Cow position: | chr12:8136512-8136784 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 72-203 |
| Cow position: | chr12:19793942-19794075 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 83-340 |
| Cow position: | chr12:47940456-47940716 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 98-326 |
| Cow position: | chr12:42557617-42557853 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 103-301 |
| Cow position: | chr12:22254039-22253836 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 579-802 |
| Cow position: | chr12:17976790-17977010 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 39 |
Show alignments to all cow chromosomes.