Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-206
Cow position: chr14:13990498-13990705 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 76

Conread position: 1-207
Cow position: chr14:43564665-43564462 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 29

Conread position: 1-217
Cow position: chr14:6046321-6046105 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 62

Conread position: 1-227
Cow position: chr14:4295888-4295655 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 74

Conread position: 1-243
Cow position: chr14:13836749-13836517 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 123, 50

Conread position: 1-248
Cow position: chr14:40346472-40346219 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 63

Conread position: 1-274
Cow position: chr14:40482717-40482448 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 211, 65

Conread position: 1-278
Cow position: chr14:33773183-33772902 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 127, 63

Conread position: 1-299
Cow position: chr14:39506070-39506377 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 160

Conread position: 1-320
Cow position: chr14:20273480-20273158 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 65, 25

Conread position: 1-333
Cow position: chr14:19028266-19027928 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 124, 63

Conread position: 1-333
Cow position: chr14:19878120-19877786 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 55

Conread position: 1-337
Cow position: chr14:19459660-19460009 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 124, 158

Conread position: 1-337
Cow position: chr14:34617865-34617538 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 55

Conread position: 1-337
Cow position: chr14:41478136-41477802 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 207, 25

Conread position: 1-337
Cow position: chr14:41798674-41798329 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 15

Conread position: 2-175
Cow position: chr14:46554062-46553888 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 125, 154

Conread position: 2-206
Cow position: chr14:18951553-18951355 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 97

Conread position: 2-224
Cow position: chr14:21737092-21736872 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 63

Conread position: 2-331
Cow position: chr14:21920031-21920358 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 14

Conread position: 2-332
Cow position: chr14:48881922-48881591 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 222
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 124, 38

Conread position: 3-256
Cow position: chr14:194939-194691 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 125, 28

Conread position: 3-266
Cow position: chr14:50122235-50121969 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 175
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 61

Conread position: 3-337
Cow position: chr14:37180163-37180488 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 126, 138

Conread position: 3-344
Cow position: chr14:9964958-9964604 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 76

Conread position: 3-367
Cow position: chr14:18497195-18496826 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 239
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 163

Conread position: 4-267
Cow position: chr14:35666900-35667170 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 190
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 101, 163

Conread position: 6-155
Cow position: chr14:41962354-41962506 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 67, 58

Conread position: 6-306
Cow position: chr14:13360743-13360450 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 62

Conread position: 6-335
Cow position: chr14:48707397-48707072 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 209
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 154

Conread position: 6-337
Cow position: chr14:25430853-25430518 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 224
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 120, 30

Conread position: 7-326
Cow position: chr14:33515728-33515414 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 119, 78

Conread position: 8-357
Cow position: chr14:40759589-40759240 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 56

Conread position: 10-265
Cow position: chr14:13664481-13664737 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 71, 19

Conread position: 11-333
Cow position: chr14:35188340-35188655 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 114, 52

Conread position: 12-193
Cow position: chr14:13810836-13811019 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 149

Conread position: 12-207
Cow position: chr14:42259666-42259469 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 151

Conread position: 12-255
Cow position: chr14:12243676-12243434 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 33

Conread position: 12-275
Cow position: chr14:47190807-47191066 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 52

Conread position: 12-333
Cow position: chr14:12951316-12950993 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 113, 63

Conread position: 12-333
Cow position: chr14:20706883-20706555 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 113, 147

Conread position: 12-337
Cow position: chr14:7476057-7475725 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 54

Conread position: 12-338
Cow position: chr14:32580479-32580146 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 225
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 104

Conread position: 12-338
Cow position: chr14:35001209-35000897 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 114, 67

Conread position: 12-369
Cow position: chr14:30465006-30464668 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 230
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 225, 52

Conread position: 13-154
Cow position: chr14:37063865-37063725 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 68

Conread position: 13-206
Cow position: chr14:12859339-12859530 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 38

Conread position: 14-261
Cow position: chr14:9946926-9946682 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 86, 147

Conread position: 15-206
Cow position: chr14:36546933-36546744 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 111, 65

Conread position: 15-254
Cow position: chr14:33963133-33963378 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 7, 146

Conread position: 15-338
Cow position: chr14:17770980-17771310 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 60

Conread position: 17-292
Cow position: chr14:17050470-17050759 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 56, 148

Conread position: 21-266
Cow position: chr14:37136999-37136753 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 59

Conread position: 21-328
Cow position: chr14:19215950-19215632 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 144

Conread position: 21-338
Cow position: chr14:39505522-39505852 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 108, 43

Conread position: 23-262
Cow position: chr14:28406547-28406304 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 130, 69

Conread position: 23-333
Cow position: chr14:45961953-45962272 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 137

Conread position: 24-278
Cow position: chr14:29568911-29569154 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 41

Conread position: 24-323
Cow position: chr14:38741546-38741855 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 142

Conread position: 24-329
Cow position: chr14:34765267-34764955 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 116, 62

Conread position: 24-333
Cow position: chr14:17776501-17776791 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 102, 40

Conread position: 25-338
Cow position: chr14:18979842-18979529 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 7, 43

Conread position: 27-330
Cow position: chr14:17651142-17650831 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 133

Conread position: 32-337
Cow position: chr14:10091439-10091744 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 176, 6

Conread position: 43-255
Cow position: chr14:45292150-45291943 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 32

Conread position: 43-326
Cow position: chr14:48441408-48441696 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 42, 36

Conread position: 45-278
Cow position: chr14:20371240-20371017 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 9

Conread position: 53-251
Cow position: chr14:10632707-10632504 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 28, 11

Conread position: 62-311
Cow position: chr14:14230502-14230245 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 70-332
Cow position: chr14:1735387-1735650 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 28

Conread position: 70-336
Cow position: chr14:12962614-12962882 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 94

Conread position: 71-337
Cow position: chr14:13092959-13092685 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 72

Conread position: 74-311
Cow position: chr14:44772698-44772937 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 92

Conread position: 75-315
Cow position: chr14:13544308-13544063 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 70

Conread position: 81-331
Cow position: chr14:14704879-14705137 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 47, 74

Conread position: 87-316
Cow position: chr14:38708662-38708442 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 129, 44

Conread position: 109-333
Cow position: chr14:7722238-7722009 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 51

Conread position: 114-331
Cow position: chr14:37045839-37045620 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 54

Conread position: 131-337
Cow position: chr14:25260069-25259858 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 79, 8

Conread position: 335-695
Cow position: chr14:34044278-34043948 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 147, 17

Conread position: 336-501
Cow position: chr14:42123468-42123294 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 77

Conread position: 338-515
Cow position: chr14:32534014-32533842 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 14

Conread position: 338-762
Cow position: chr14:38816474-38816054 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 76

Conread position: 338-796
Cow position: chr14:30706955-30706491 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 76

Conread position: 500-781
Cow position: chr14:42123058-42122790 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 33, 26

Conread position: 530-799
Cow position: chr14:9516272-9516008 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 45

Show alignments to all cow chromosomes.