Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-166
Cow position: chr15:14166978-14167145 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 151, 85

Conread position: 1-207
Cow position: chr15:30045623-30045416 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 63

Conread position: 1-212
Cow position: chr15:17694701-17694500 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 209, 63

Conread position: 1-248
Cow position: chr15:50958665-50958422 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 64

Conread position: 1-250
Cow position: chr15:47201358-47201612 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 167
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 85, 160

Conread position: 1-269
Cow position: chr15:33399618-33399348 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 8

Conread position: 1-271
Cow position: chr15:43079278-43079545 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 28, 22

Conread position: 1-281
Cow position: chr15:10839177-10838902 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 69, 50

Conread position: 1-295
Cow position: chr15:38679246-38678936 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 59

Conread position: 1-305
Cow position: chr15:37461071-37460766 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 125, 74

Conread position: 1-330
Cow position: chr15:10801862-10801523 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 122, 106

Conread position: 1-330
Cow position: chr15:40821341-40821005 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 71, 63

Conread position: 1-336
Cow position: chr15:38750472-38750132 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 124, 66

Conread position: 1-337
Cow position: chr15:34956145-34955804 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 1-337
Cow position: chr15:46231711-46231362 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 124, 63

Conread position: 1-339
Cow position: chr15:16515418-16515081 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 222
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 26

Conread position: 1-344
Cow position: chr15:15172789-15172438 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 122, 55

Conread position: 1-359
Cow position: chr15:9122292-9121937 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 124, 63

Conread position: 1-370
Cow position: chr15:5040616-5040257 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 256
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 64

Conread position: 2-258
Cow position: chr15:34499527-34499279 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 12, 86

Conread position: 2-333
Cow position: chr15:14719253-14718916 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 220
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 68, 62

Conread position: 2-337
Cow position: chr15:40109933-40109612 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 122, 79

Conread position: 3-328
Cow position: chr15:39630372-39630700 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 153

Conread position: 3-336
Cow position: chr15:18757615-18757947 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 65

Conread position: 4-207
Cow position: chr15:33304584-33304788 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 156

Conread position: 4-255
Cow position: chr15:22712937-22712687 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 35

Conread position: 4-333
Cow position: chr15:50344521-50344854 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 213
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 62

Conread position: 6-183
Cow position: chr15:23057351-23057528 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 78, 58

Conread position: 6-259
Cow position: chr15:22162066-22162307 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 120, 61

Conread position: 6-266
Cow position: chr15:36671368-36671122 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 58

Conread position: 11-268
Cow position: chr15:47343000-47343253 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 148

Conread position: 11-338
Cow position: chr15:704459-704779 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 7, 46

Conread position: 12-155
Cow position: chr15:33747979-33747834 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 69, 52

Conread position: 12-163
Cow position: chr15:22560694-22560543 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 114, 42

Conread position: 12-173
Cow position: chr15:29449288-29449447 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 67

Conread position: 12-193
Cow position: chr15:29813285-29813104 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 116, 147

Conread position: 12-194
Cow position: chr15:47620044-47619861 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 147

Conread position: 12-206
Cow position: chr15:52740301-52740109 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 53

Conread position: 12-207
Cow position: chr15:52867832-52867640 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 12-251
Cow position: chr15:48288041-48287803 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 116, 52

Conread position: 12-252
Cow position: chr15:40171169-40171413 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 52

Conread position: 12-262
Cow position: chr15:24639233-24638984 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 52

Conread position: 12-266
Cow position: chr15:11574815-11575067 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 55

Conread position: 12-288
Cow position: chr15:8272687-8272968 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 49, 155

Conread position: 12-306
Cow position: chr15:41147953-41147652 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 116, 147

Conread position: 12-306
Cow position: chr15:42157499-42157197 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 195
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 154

Conread position: 12-326
Cow position: chr15:34057627-34057934 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 61, 46

Conread position: 12-327
Cow position: chr15:21687915-21688229 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 69, 25

Conread position: 12-331
Cow position: chr15:24680509-24680184 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 227
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 47, 14

Conread position: 12-337
Cow position: chr15:4713112-4712779 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 212
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 55

Conread position: 12-337
Cow position: chr15:9438795-9438470 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 68, 46

Conread position: 12-337
Cow position: chr15:20329217-20329542 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 72, 150

Conread position: 12-357
Cow position: chr15:35847384-35847044 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 15

Conread position: 12-359
Cow position: chr15:30473527-30473871 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 226
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 110, 52

Conread position: 13-147
Cow position: chr15:19814377-19814513 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 51

Conread position: 13-337
Cow position: chr15:45501953-45502283 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 5, 63

Conread position: 13-338
Cow position: chr15:41785510-41785843 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 105, 67

Conread position: 15-336
Cow position: chr15:8359839-8359504 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 126

Conread position: 17-334
Cow position: chr15:28071240-28071557 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 108, 50

Conread position: 19-207
Cow position: chr15:4859753-4859945 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 143

Conread position: 19-337
Cow position: chr15:46054891-46054586 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 106, 63

Conread position: 20-205
Cow position: chr15:13855800-13855618 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 102, 87

Conread position: 21-192
Cow position: chr15:32824738-32824904 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 21

Conread position: 21-265
Cow position: chr15:11628596-11628350 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 44

Conread position: 21-275
Cow position: chr15:40344054-40344305 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 54, 140

Conread position: 21-333
Cow position: chr15:8061384-8061060 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 139

Conread position: 24-315
Cow position: chr15:21409925-21409635 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 102, 43

Conread position: 27-296
Cow position: chr15:24607230-24607511 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 141

Conread position: 27-303
Cow position: chr15:51228303-51228022 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 188
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 38

Conread position: 28-300
Cow position: chr15:7447531-7447809 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 85

Conread position: 36-333
Cow position: chr15:41965015-41964714 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 98

Conread position: 37-339
Cow position: chr15:42633894-42634201 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 201
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 124

Conread position: 42-337
Cow position: chr15:25066278-25065982 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 36

Conread position: 48-274
Cow position: chr15:30726070-30726304 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 78, 111

Conread position: 48-315
Cow position: chr15:17660639-17660364 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 40

Conread position: 49-297
Cow position: chr15:13981221-13981474 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 91

Conread position: 53-337
Cow position: chr15:48026285-48025993 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 105

Conread position: 56-306
Cow position: chr15:34274694-34274438 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 88

Conread position: 60-284
Cow position: chr15:16340346-16340578 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 99

Conread position: 72-370
Cow position: chr15:1877532-1877227 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 69

Conread position: 76-328
Cow position: chr15:23215606-23215855 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 5, 26

Conread position: 80-323
Cow position: chr15:10783703-10783459 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 28

Conread position: 80-333
Cow position: chr15:13121025-13120773 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 128, 52

Conread position: 81-308
Cow position: chr15:42102000-42101771 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 48, 78

Conread position: 81-328
Cow position: chr15:29273110-29273361 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 80

Conread position: 81-333
Cow position: chr15:27759415-27759671 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 9

Conread position: 84-331
Cow position: chr15:17442179-17442431 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 42, 76

Conread position: 87-333
Cow position: chr15:7279125-7278878 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 41, 73

Conread position: 95-337
Cow position: chr15:16925582-16925830 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 65

Conread position: 109-337
Cow position: chr15:46106324-46106098 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 16

Conread position: 333-594
Cow position: chr15:32672618-32672882 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 8

Conread position: 338-804
Cow position: chr15:30810364-30810818 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 75

Conread position: 346-798
Cow position: chr15:20357542-20357092 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 313
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 67

Show alignments to all cow chromosomes.