Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-187 |
| Cow position: | chr17:3049728-3049544 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 1-205 |
| Cow position: | chr17:20209447-20209653 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 158 |
| Conread position: | 1-205 |
| Cow position: | chr17:39748068-39747871 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 1-207 |
| Cow position: | chr17:36817294-36817096 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-240 |
| Cow position: | chr17:8008009-8007774 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 1-248 |
| Cow position: | chr17:876514-876779 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 1-251 |
| Cow position: | chr17:16118043-16118292 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-251 |
| Cow position: | chr17:18265048-18265300 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 11 |
| Conread position: | 1-251 |
| Cow position: | chr17:18840955-18841203 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 1-255 |
| Cow position: | chr17:36790494-36790236 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 1-256 |
| Cow position: | chr17:7802431-7802675 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 127, 54 |
| Conread position: | 1-272 |
| Cow position: | chr17:3414799-3414530 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 1-274 |
| Cow position: | chr17:692196-692476 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 1-291 |
| Cow position: | chr17:654395-654690 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 1-300 |
| Cow position: | chr17:11775840-11775545 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 1-306 |
| Cow position: | chr17:10285465-10285763 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 84, 131 |
| Conread position: | 1-310 |
| Cow position: | chr17:29822976-29822662 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 1-323 |
| Cow position: | chr17:6099989-6099661 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 1-328 |
| Cow position: | chr17:3549841-3550171 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 131, 50 |
| Conread position: | 1-333 |
| Cow position: | chr17:1654336-1654674 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 157 |
| Conread position: | 1-333 |
| Cow position: | chr17:41243543-41243208 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 124, 47 |
| Conread position: | 2-328 |
| Cow position: | chr17:4608707-4608377 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 125, 62 |
| Conread position: | 2-331 |
| Cow position: | chr17:21184888-21185207 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 2-333 |
| Cow position: | chr17:37701375-37701041 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 3-200 |
| Cow position: | chr17:3766408-3766603 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 3-205 |
| Cow position: | chr17:44222659-44222459 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 3-337 |
| Cow position: | chr17:13180940-13180606 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 3-337 |
| Cow position: | chr17:35018769-35018430 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 6-206 |
| Cow position: | chr17:27052831-27052630 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 152 |
| Conread position: | 12-206 |
| Cow position: | chr17:4615293-4615105 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 12-300 |
| Cow position: | chr17:19133411-19133697 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 12-316 |
| Cow position: | chr17:29355645-29355948 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 12-322 |
| Cow position: | chr17:38788881-38789205 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 150 |
| Conread position: | 12-322 |
| Cow position: | chr17:38800123-38800445 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 58, 150 |
| Conread position: | 12-333 |
| Cow position: | chr17:24312541-24312214 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 12-337 |
| Cow position: | chr17:18893076-18892755 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 52 |
| Conread position: | 12-338 |
| Cow position: | chr17:34886393-34886731 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 13-328 |
| Cow position: | chr17:42663162-42663475 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 13-328 |
| Cow position: | chr17:43227749-43227432 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 15-207 |
| Cow position: | chr17:25567611-25567420 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 17-228 |
| Cow position: | chr17:38629537-38629323 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 19-315 |
| Cow position: | chr17:18384510-18384807 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 21-337 |
| Cow position: | chr17:144809-145114 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 21-338 |
| Cow position: | chr17:22500794-22500468 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 24-329 |
| Cow position: | chr17:15190770-15191063 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 24-330 |
| Cow position: | chr17:42352493-42352781 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 24-331 |
| Cow position: | chr17:12477275-12476963 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 226 |
| Conread position: | 24-341 |
| Cow position: | chr17:21128431-21128114 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 27-332 |
| Cow position: | chr17:9753189-9752879 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 134 |
| Conread position: | 27-337 |
| Cow position: | chr17:23041976-23041659 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 27-338 |
| Cow position: | chr17:33338093-33337786 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 43-302 |
| Cow position: | chr17:20702817-20703076 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 49-327 |
| Cow position: | chr17:2698934-2698647 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 58-243 |
| Cow position: | chr17:1219583-1219770 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 72-328 |
| Cow position: | chr17:36242235-36242485 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 77-337 |
| Cow position: | chr17:38942953-38942687 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 80-328 |
| Cow position: | chr17:29128994-29129246 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 200 |
| Conread position: | 80-370 |
| Cow position: | chr17:43498425-43498717 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 81-338 |
| Cow position: | chr17:23056596-23056340 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 91-333 |
| Cow position: | chr17:45793976-45793739 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 99-344 |
| Cow position: | chr17:41813769-41813520 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 161 |
| Conread position: | 102-334 |
| Cow position: | chr17:42382730-42382967 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 127-337 |
| Cow position: | chr17:19598875-19599091 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 395-799 |
| Cow position: | chr17:15383914-15384300 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 161, 18 |
Show alignments to all cow chromosomes.