Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-182
Cow position: chr18:12666777-12666957 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 82, 59

Conread position: 1-198
Cow position: chr18:23044122-23043923 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 46

Conread position: 1-206
Cow position: chr18:254509-254303 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 80, 148

Conread position: 1-250
Cow position: chr18:51032067-51032318 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 43

Conread position: 1-266
Cow position: chr18:43464119-43464389 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 53, 47

Conread position: 1-274
Cow position: chr18:35883773-35884044 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 127, 50

Conread position: 1-282
Cow position: chr18:46881727-46882007 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 15, 9

Conread position: 1-288
Cow position: chr18:28530803-28531096 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 80

Conread position: 1-297
Cow position: chr18:17752807-17753124 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 125, 63

Conread position: 1-306
Cow position: chr18:23880015-23879707 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 10, 50

Conread position: 1-306
Cow position: chr18:35478471-35478167 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 125, 63

Conread position: 1-327
Cow position: chr18:51251319-51250987 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 127, 63

Conread position: 1-331
Cow position: chr18:19271144-19270812 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 128, 63

Conread position: 1-331
Cow position: chr18:25200409-25200082 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 127, 176

Conread position: 1-331
Cow position: chr18:51309549-51309214 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 57

Conread position: 1-333
Cow position: chr18:41958170-41957827 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 127, 35

Conread position: 1-336
Cow position: chr18:51331480-51331153 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 129, 63

Conread position: 1-337
Cow position: chr18:902674-902336 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 29, 21

Conread position: 1-337
Cow position: chr18:14816865-14816520 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 99, 76

Conread position: 1-337
Cow position: chr18:30846416-30846757 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 127, 85

Conread position: 1-337
Cow position: chr18:37874127-37874462 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 124, 28

Conread position: 1-338
Cow position: chr18:37678347-37678009 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 230
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 8

Conread position: 1-338
Cow position: chr18:40342196-40342541 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 226
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 85, 65

Conread position: 1-343
Cow position: chr18:7445181-7444820 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 63, 164

Conread position: 1-355
Cow position: chr18:39412460-39412112 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 52

Conread position: 1-369
Cow position: chr18:19401567-19401936 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 251
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 124, 63

Conread position: 2-299
Cow position: chr18:17355016-17354713 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 49, 66

Conread position: 3-228
Cow position: chr18:41498507-41498289 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 125, 64

Conread position: 3-251
Cow position: chr18:26305922-26305668 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 83, 157

Conread position: 3-306
Cow position: chr18:37862143-37862462 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 79, 16

Conread position: 3-333
Cow position: chr18:12249325-12248996 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 122, 61

Conread position: 3-333
Cow position: chr18:21797738-21797403 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 15, 62

Conread position: 3-337
Cow position: chr18:40078527-40078862 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 70, 52

Conread position: 4-306
Cow position: chr18:6377190-6376876 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 69, 6

Conread position: 6-331
Cow position: chr18:15485561-15485887 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 215
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 69

Conread position: 11-255
Cow position: chr18:19683495-19683741 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 114, 101

Conread position: 11-330
Cow position: chr18:48798350-48798013 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 106

Conread position: 12-205
Cow position: chr18:41156841-41156653 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 147

Conread position: 12-250
Cow position: chr18:17335101-17335343 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 113, 147

Conread position: 12-251
Cow position: chr18:21236783-21237026 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 53

Conread position: 12-255
Cow position: chr18:51580145-51580391 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 74, 52

Conread position: 12-334
Cow position: chr18:17454382-17454703 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 69

Conread position: 12-337
Cow position: chr18:13025493-13025166 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 51

Conread position: 12-337
Cow position: chr18:29797444-29797778 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 148

Conread position: 12-348
Cow position: chr18:21455721-21455376 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 239
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 24

Conread position: 13-207
Cow position: chr18:4369708-4369903 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 51

Conread position: 13-251
Cow position: chr18:32117348-32117113 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 112, 51

Conread position: 13-329
Cow position: chr18:54629517-54629841 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 55

Conread position: 14-331
Cow position: chr18:24502378-24502067 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 208
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 66

Conread position: 14-333
Cow position: chr18:1658934-1659254 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 113, 61

Conread position: 14-336
Cow position: chr18:24712344-24712675 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 49

Conread position: 15-333
Cow position: chr18:35852951-35853275 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 215
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 113, 29

Conread position: 15-337
Cow position: chr18:17735788-17736126 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 63, 84

Conread position: 17-328
Cow position: chr18:12275736-12275425 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 94, 8

Conread position: 19-207
Cow position: chr18:17324008-17323819 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 140

Conread position: 20-243
Cow position: chr18:10802260-10802475 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 47

Conread position: 21-278
Cow position: chr18:51234442-51234711 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 155

Conread position: 21-333
Cow position: chr18:17670341-17670659 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 107, 23

Conread position: 21-336
Cow position: chr18:36208758-36209065 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 51

Conread position: 23-267
Cow position: chr18:43129706-43129471 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 103, 15

Conread position: 24-337
Cow position: chr18:5977575-5977879 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 236, 39

Conread position: 26-328
Cow position: chr18:14406592-14406904 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 54

Conread position: 26-333
Cow position: chr18:12997192-12996879 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 204
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 100, 129

Conread position: 27-206
Cow position: chr18:32323555-32323373 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 17

Conread position: 27-327
Cow position: chr18:48300841-48301149 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 24

Conread position: 27-337
Cow position: chr18:183402-183091 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 48

Conread position: 48-333
Cow position: chr18:34574923-34575207 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 191
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 61

Conread position: 49-268
Cow position: chr18:28679304-28679083 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 15

Conread position: 50-338
Cow position: chr18:9104841-9105146 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 20

Conread position: 61-338
Cow position: chr18:28084638-28084354 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 98

Conread position: 64-338
Cow position: chr18:37561568-37561298 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 62, 5

Conread position: 65-327
Cow position: chr18:17995537-17995808 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 65-329
Cow position: chr18:15859959-15859701 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 13

Conread position: 82-337
Cow position: chr18:18854995-18854733 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 69

Conread position: 82-337
Cow position: chr18:36606143-36605890 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 84

Conread position: 87-337
Cow position: chr18:44404399-44404137 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 39, 102

Conread position: 88-337
Cow position: chr18:39812076-39812330 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 7, 82

Conread position: 131-337
Cow position: chr18:14761670-14761465 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 116, 27

Conread position: 140-345
Cow position: chr18:30110906-30111112 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 25

Conread position: 339-790
Cow position: chr18:9186595-9186160 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 34

Conread position: 341-694
Cow position: chr18:46877831-46877462 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 254
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 103, 5

Conread position: 389-799
Cow position: chr18:4885352-4884942 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 23

Show alignments to all cow chromosomes.