Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-165 |
| Cow position: | chr19:36150434-36150269 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 1-193 |
| Cow position: | chr19:39794115-39793922 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 1-200 |
| Cow position: | chr19:23872659-23872848 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 1-206 |
| Cow position: | chr19:30565204-30565001 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 1-208 |
| Cow position: | chr19:1267574-1267779 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 127, 157 |
| Conread position: | 1-227 |
| Cow position: | chr19:48025438-48025665 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 53 |
| Conread position: | 1-243 |
| Cow position: | chr19:41166820-41166579 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 1-255 |
| Cow position: | chr19:2260792-2261046 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-255 |
| Cow position: | chr19:35782741-35782998 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 1-266 |
| Cow position: | chr19:46873367-46873636 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 124, 159 |
| Conread position: | 1-268 |
| Cow position: | chr19:50561717-50561452 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 1-274 |
| Cow position: | chr19:14367485-14367212 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 1-301 |
| Cow position: | chr19:31279894-31279599 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-315 |
| Cow position: | chr19:7608073-7608381 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 202, 82 |
| Conread position: | 1-325 |
| Cow position: | chr19:30456231-30455898 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 126, 168 |
| Conread position: | 1-325 |
| Cow position: | chr19:42871019-42870687 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 73, 162 |
| Conread position: | 1-333 |
| Cow position: | chr19:41213882-41214218 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 79 |
| Conread position: | 1-336 |
| Cow position: | chr19:18448607-18448283 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 1-336 |
| Cow position: | chr19:21200908-21200577 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 1-337 |
| Cow position: | chr19:6614732-6614392 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 1-337 |
| Cow position: | chr19:19462180-19461837 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 1-337 |
| Cow position: | chr19:51504725-51504401 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 1-339 |
| Cow position: | chr19:41786153-41786486 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 2-255 |
| Cow position: | chr19:3221759-3221512 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 123, 47 |
| Conread position: | 2-328 |
| Cow position: | chr19:28912187-28911852 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 2-330 |
| Cow position: | chr19:29089401-29089064 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 80, 161 |
| Conread position: | 2-338 |
| Cow position: | chr19:1579688-1580028 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 124, 158 |
| Conread position: | 2-342 |
| Cow position: | chr19:28643486-28643155 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 3-259 |
| Cow position: | chr19:12209275-12209533 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 156 |
| Conread position: | 3-333 |
| Cow position: | chr19:5429156-5429486 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 4-336 |
| Cow position: | chr19:28015397-28015074 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 7-212 |
| Cow position: | chr19:42240970-42241181 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 7-333 |
| Cow position: | chr19:55217458-55217122 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 9-337 |
| Cow position: | chr19:6980728-6981051 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 10-333 |
| Cow position: | chr19:9099261-9098929 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 12-153 |
| Cow position: | chr19:13593457-13593320 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-180 |
| Cow position: | chr19:17423793-17423957 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-194 |
| Cow position: | chr19:19714435-19714251 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 149 |
| Conread position: | 12-207 |
| Cow position: | chr19:435690-435887 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 12-255 |
| Cow position: | chr19:42274580-42274821 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 12-327 |
| Cow position: | chr19:42580680-42580992 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 12-333 |
| Cow position: | chr19:4599656-4599333 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 12-333 |
| Cow position: | chr19:52465644-52465963 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 12-336 |
| Cow position: | chr19:4990835-4990506 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 114, 86 |
| Conread position: | 12-337 |
| Cow position: | chr19:33625214-33624885 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 113, 54 |
| Conread position: | 12-338 |
| Cow position: | chr19:44035277-44034956 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 13-338 |
| Cow position: | chr19:52834646-52834310 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 151 |
| Conread position: | 14-333 |
| Cow position: | chr19:28980113-28979792 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 146 |
| Conread position: | 14-355 |
| Cow position: | chr19:41851849-41852198 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 15-205 |
| Cow position: | chr19:3177104-3176914 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 15-330 |
| Cow position: | chr19:17732252-17731949 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 52 |
| Conread position: | 15-337 |
| Cow position: | chr19:4304130-4303825 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 195, 56 |
| Conread position: | 15-344 |
| Cow position: | chr19:26487901-26487560 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 157 |
| Conread position: | 17-333 |
| Cow position: | chr19:35982402-35982088 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 22-333 |
| Cow position: | chr19:4839824-4840139 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 23-274 |
| Cow position: | chr19:34269402-34269658 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 58, 95 |
| Conread position: | 23-355 |
| Cow position: | chr19:34048481-34048154 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 101, 136 |
| Conread position: | 24-310 |
| Cow position: | chr19:8828779-8828492 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 24-334 |
| Cow position: | chr19:42779213-42778904 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 24-337 |
| Cow position: | chr19:40246621-40246943 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 27-291 |
| Cow position: | chr19:41518807-41518542 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 27-337 |
| Cow position: | chr19:21242064-21241758 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 29-337 |
| Cow position: | chr19:4360124-4359820 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 34-306 |
| Cow position: | chr19:5890556-5890286 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 43-331 |
| Cow position: | chr19:18255643-18255341 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 45-328 |
| Cow position: | chr19:28804784-28804500 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 50-206 |
| Cow position: | chr19:35062265-35062420 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 51-262 |
| Cow position: | chr19:35835215-35835000 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 198 |
| Conread position: | 60-337 |
| Cow position: | chr19:43511209-43510922 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 77-337 |
| Cow position: | chr19:32784055-32784317 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 83 |
| Conread position: | 81-337 |
| Cow position: | chr19:24671919-24672183 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 87 |
| Conread position: | 83-333 |
| Cow position: | chr19:6358192-6358441 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 102-331 |
| Cow position: | chr19:2701020-2701255 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 105-331 |
| Cow position: | chr19:23822187-23822410 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 110-327 |
| Cow position: | chr19:6628922-6629141 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 128-333 |
| Cow position: | chr19:23864557-23864765 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 138-344 |
| Cow position: | chr19:9396708-9396913 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 159-337 |
| Cow position: | chr19:12415951-12416137 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 180-339 |
| Cow position: | chr19:35835046-35834888 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 341-659 |
| Cow position: | chr19:20111069-20110763 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 16, 5 |
Show alignments to all cow chromosomes.