Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-205
Cow position:
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 125, 18

Conread position: 1-205
Cow position:
Alignm length: 209
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 64

Conread position: 1-255
Cow position:
Alignm length: 256
Alignm identity: 168
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 194, 127

Conread position: 1-258
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 41, 64

Conread position: 1-280
Cow position:
Alignm length: 286
Alignm identity: 187
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 53

Conread position: 1-293
Cow position:
Alignm length: 295
Alignm identity: 194
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 124, 66

Conread position: 1-318
Cow position:
Alignm length: 329
Alignm identity: 220
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 124, 22

Conread position: 1-319
Cow position:
Alignm length: 324
Alignm identity: 227
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 69, 63

Conread position: 1-330
Cow position:
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 125, 74

Conread position: 1-331
Cow position:
Alignm length: 337
Alignm identity: 222
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 125, 65

Conread position: 1-333
Cow position:
Alignm length: 336
Alignm identity: 231
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 124, 25

Conread position: 1-333
Cow position:
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 37

Conread position: 1-333
Cow position:
Alignm length: 343
Alignm identity: 227
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 25

Conread position: 1-337
Cow position:
Alignm length: 342
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 131, 25

Conread position: 1-337
Cow position:
Alignm length: 346
Alignm identity: 219
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 124, 65

Conread position: 1-338
Cow position:
Alignm length: 345
Alignm identity: 217
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 63

Conread position: 1-355
Cow position:
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 27

Conread position: 2-249
Cow position:
Alignm length: 253
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 63

Conread position: 2-270
Cow position:
Alignm length: 279
Alignm identity: 189
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 69, 149

Conread position: 2-330
Cow position:
Alignm length: 336
Alignm identity: 228
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 126, 154

Conread position: 2-355
Cow position:
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 62

Conread position: 3-205
Cow position:
Alignm length: 205
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 122, 64

Conread position: 3-251
Cow position:
Alignm length: 256
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 62

Conread position: 3-255
Cow position:
Alignm length: 259
Alignm identity: 171
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 78

Conread position: 3-270
Cow position:
Alignm length: 284
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 159

Conread position: 3-291
Cow position:
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 120, 61

Conread position: 3-300
Cow position:
Alignm length: 304
Alignm identity: 209
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 122, 65

Conread position: 3-331
Cow position:
Alignm length: 342
Alignm identity: 221
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 80

Conread position: 3-333
Cow position:
Alignm length: 346
Alignm identity: 239
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 61, 166

Conread position: 3-333
Cow position:
Alignm length: 340
Alignm identity: 213
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 62

Conread position: 3-336
Cow position:
Alignm length: 345
Alignm identity: 227
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 60

Conread position: 3-337
Cow position:
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 83

Conread position: 3-337
Cow position:
Alignm length: 346
Alignm identity: 242
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 99, 23

Conread position: 3-337
Cow position:
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 35

Conread position: 4-286
Cow position:
Alignm length: 289
Alignm identity: 190
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 124, 109

Conread position: 4-359
Cow position:
Alignm length: 379
Alignm identity: 256
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 8, 72

Conread position: 5-173
Cow position:
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 7

Conread position: 6-183
Cow position:
Alignm length: 180
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 119, 73

Conread position: 6-207
Cow position:
Alignm length: 204
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 119, 20

Conread position: 6-262
Cow position:
Alignm length: 263
Alignm identity: 180
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 6-282
Cow position:
Alignm length: 282
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 122, 113

Conread position: 6-338
Cow position:
Alignm length: 337
Alignm identity: 228
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 120, 61

Conread position: 7-133
Cow position:
Alignm length: 130
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 7-306
Cow position:
Alignm length: 316
Alignm identity: 211
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 79, 60

Conread position: 9-228
Cow position:
Alignm length: 230
Alignm identity: 170
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 65, 29

Conread position: 10-293
Cow position:
Alignm length: 291
Alignm identity: 191
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 151

Conread position: 11-311
Cow position:
Alignm length: 304
Alignm identity: 201
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 196, 67

Conread position: 11-329
Cow position:
Alignm length: 326
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 197, 53

Conread position: 11-333
Cow position:
Alignm length: 334
Alignm identity: 219
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 98

Conread position: 11-337
Cow position:
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 57

Conread position: 12-162
Cow position:
Alignm length: 153
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 12-201
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 62, 155

Conread position: 12-205
Cow position:
Alignm length: 196
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 61

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 136
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 113, 52

Conread position: 12-207
Cow position:
Alignm length: 200
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 52

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 67

Conread position: 12-208
Cow position:
Alignm length: 198
Alignm identity: 133
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 112, 146

Conread position: 12-227
Cow position:
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 113, 66

Conread position: 12-236
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 116, 146

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 167
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 113, 68

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 168
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 74, 54

Conread position: 12-283
Cow position:
Alignm length: 278
Alignm identity: 179
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 148

Conread position: 12-304
Cow position:
Alignm length: 304
Alignm identity: 201
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 30

Conread position: 12-321
Cow position:
Alignm length: 315
Alignm identity: 218
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 198, 145

Conread position: 12-326
Cow position:
Alignm length: 325
Alignm identity: 218
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 58

Conread position: 12-333
Cow position:
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 149

Conread position: 12-336
Cow position:
Alignm length: 325
Alignm identity: 218
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 12-336
Cow position:
Alignm length: 336
Alignm identity: 213
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 68

Conread position: 12-338
Cow position:
Alignm length: 336
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 117, 52

Conread position: 12-339
Cow position:
Alignm length: 336
Alignm identity: 238
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 54, 149

Conread position: 12-339
Cow position:
Alignm length: 340
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 52

Conread position: 12-345
Cow position:
Alignm length: 348
Alignm identity: 241
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 65, 109

Conread position: 13-310
Cow position:
Alignm length: 311
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 66, 155

Conread position: 13-311
Cow position:
Alignm length: 310
Alignm identity: 205
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 122

Conread position: 13-337
Cow position:
Alignm length: 341
Alignm identity: 232
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 112, 55

Conread position: 14-327
Cow position:
Alignm length: 333
Alignm identity: 227
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 23, 155

Conread position: 15-187
Cow position:
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 32

Conread position: 15-207
Cow position:
Alignm length: 195
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 110, 36

Conread position: 15-244
Cow position:
Alignm length: 235
Alignm identity: 158
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 113, 18

Conread position: 15-251
Cow position:
Alignm length: 240
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 55

Conread position: 15-315
Cow position:
Alignm length: 307
Alignm identity: 210
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 193, 30

Conread position: 15-336
Cow position:
Alignm length: 327
Alignm identity: 208
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 144

Conread position: 16-337
Cow position:
Alignm length: 332
Alignm identity: 223
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 9, 113

Conread position: 18-326
Cow position:
Alignm length: 315
Alignm identity: 201
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 71

Conread position: 20-289
Cow position:
Alignm length: 279
Alignm identity: 199
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 45

Conread position: 21-241
Cow position:
Alignm length: 225
Alignm identity: 153
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 104, 45

Conread position: 21-251
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 38

Conread position: 21-295
Cow position:
Alignm length: 284
Alignm identity: 188
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 140

Conread position: 21-338
Cow position:
Alignm length: 322
Alignm identity: 204
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 63

Conread position: 22-207
Cow position:
Alignm length: 189
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 24

Conread position: 22-321
Cow position:
Alignm length: 310
Alignm identity: 209
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 83

Conread position: 22-337
Cow position:
Alignm length: 326
Alignm identity: 225
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 103, 53

Conread position: 23-211
Cow position:
Alignm length: 191
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 102, 58

Conread position: 23-328
Cow position:
Alignm length: 316
Alignm identity: 207
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 22

Conread position: 24-207
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 63, 137

Conread position: 24-207
Cow position:
Alignm length: 188
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 137

Conread position: 24-333
Cow position:
Alignm length: 323
Alignm identity: 226
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 49, 137

Conread position: 26-217
Cow position:
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 122

Conread position: 27-336
Cow position:
Alignm length: 321
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 98, 37

Conread position: 27-338
Cow position:
Alignm length: 323
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 6, 54

Conread position: 28-198
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 133

Conread position: 28-333
Cow position:
Alignm length: 316
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 10

Conread position: 29-333
Cow position:
Alignm length: 313
Alignm identity: 214
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 50

Conread position: 30-206
Cow position:
Alignm length: 185
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 143

Conread position: 32-343
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 131

Conread position: 35-333
Cow position:
Alignm length: 309
Alignm identity: 202
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 32

Conread position: 41-326
Cow position:
Alignm length: 293
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 23

Conread position: 43-309
Cow position:
Alignm length: 278
Alignm identity: 189
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 80, 21

Conread position: 45-337
Cow position:
Alignm length: 306
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 19

Conread position: 45-338
Cow position:
Alignm length: 297
Alignm identity: 217
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 83, 19

Conread position: 48-344
Cow position:
Alignm length: 307
Alignm identity: 199
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 113

Conread position: 53-331
Cow position:
Alignm length: 295
Alignm identity: 199
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 123

Conread position: 58-327
Cow position:
Alignm length: 280
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 67, 162

Conread position: 71-322
Cow position:
Alignm length: 263
Alignm identity: 176
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 54, 95

Conread position: 71-332
Cow position:
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 91

Conread position: 76-333
Cow position:
Alignm length: 265
Alignm identity: 177
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 90

Conread position: 82-327
Cow position:
Alignm length: 254
Alignm identity: 174
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 76

Conread position: 82-331
Cow position:
Alignm length: 259
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 188

Conread position: 82-337
Cow position:
Alignm length: 263
Alignm identity: 181
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 43, 77

Conread position: 82-338
Cow position:
Alignm length: 266
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 86

Conread position: 83-326
Cow position:
Alignm length: 261
Alignm identity: 180
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 6, 78

Conread position: 91-333
Cow position:
Alignm length: 255
Alignm identity: 172
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 54

Conread position: 114-339
Cow position:
Alignm length: 233
Alignm identity: 164
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 24

Conread position: 128-337
Cow position:
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 38

Conread position: 130-338
Cow position:
Alignm length: 213
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 11, 29

Conread position: 335-800
Cow position:
Alignm length: 483
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 45

Conread position: 337-727
Cow position:
Alignm length: 399
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 9

Conread position: 341-766
Cow position:
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 7

Conread position: 341-796
Cow position:
Alignm length: 482
Alignm identity: 321
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 5

Show alignments to all cow chromosomes.