Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-191 |
| Cow position: | chr20:10760105-10760295 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 127, 78 |
| Conread position: | 1-251 |
| Cow position: | chr20:37271892-37271636 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 162 |
| Conread position: | 1-255 |
| Cow position: | chr20:24399246-24399502 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 124, 74 |
| Conread position: | 1-290 |
| Cow position: | chr20:2178746-2179039 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 125, 165 |
| Conread position: | 1-306 |
| Cow position: | chr20:22933068-22933370 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 1-316 |
| Cow position: | chr20:27442411-27442722 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 1-332 |
| Cow position: | chr20:7875265-7875599 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 80 |
| Conread position: | 1-332 |
| Cow position: | chr20:36418106-36418441 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 1-333 |
| Cow position: | chr20:19155546-19155882 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 123, 66 |
| Conread position: | 1-337 |
| Cow position: | chr20:12837314-12837641 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 62 |
| Conread position: | 2-320 |
| Cow position: | chr20:17480145-17480464 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 157 |
| Conread position: | 2-333 |
| Cow position: | chr20:30353756-30354102 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 159 |
| Conread position: | 3-337 |
| Cow position: | chr20:923889-924242 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 174 |
| Conread position: | 4-259 |
| Cow position: | chr20:14585722-14585454 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 6-207 |
| Cow position: | chr20:21767997-21768201 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 6-266 |
| Cow position: | chr20:31000807-31000550 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 66 |
| Conread position: | 6-272 |
| Cow position: | chr20:33214163-33214433 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 6-345 |
| Cow position: | chr20:27895839-27896179 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 11-337 |
| Cow position: | chr20:6831450-6831783 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 12-205 |
| Cow position: | chr20:15436812-15436618 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 12-251 |
| Cow position: | chr20:5934520-5934758 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 12-255 |
| Cow position: | chr20:8446021-8445775 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 12-269 |
| Cow position: | chr20:25122628-25122890 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 12-273 |
| Cow position: | chr20:19668990-19669254 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 12-301 |
| Cow position: | chr20:39630003-39630294 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 12-328 |
| Cow position: | chr20:8099380-8099071 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 12-329 |
| Cow position: | chr20:10516505-10516184 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 12-329 |
| Cow position: | chr20:38103140-38103450 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 12-333 |
| Cow position: | chr20:6258685-6259013 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 12-337 |
| Cow position: | chr20:13653736-13654058 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 12-337 |
| Cow position: | chr20:21837617-21837274 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 37, 148 |
| Conread position: | 12-338 |
| Cow position: | chr20:9066137-9065815 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 12-338 |
| Cow position: | chr20:23902214-23901893 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 14-274 |
| Cow position: | chr20:23107012-23106745 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 59, 148 |
| Conread position: | 14-301 |
| Cow position: | chr20:4327361-4327075 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 15-338 |
| Cow position: | chr20:2016218-2016537 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 16-331 |
| Cow position: | chr20:24831674-24831991 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 21-331 |
| Cow position: | chr20:2889992-2890304 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 21-333 |
| Cow position: | chr20:36374599-36374917 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 23-255 |
| Cow position: | chr20:7225766-7225532 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 41 |
| Conread position: | 23-318 |
| Cow position: | chr20:8834133-8834426 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 24-321 |
| Cow position: | chr20:33355745-33355440 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 42, 137 |
| Conread position: | 24-333 |
| Cow position: | chr20:8364199-8364506 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 36-333 |
| Cow position: | chr20:22446148-22446448 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 39-250 |
| Cow position: | chr20:27000078-26999862 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 48-338 |
| Cow position: | chr20:20630200-20630482 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 55-309 |
| Cow position: | chr20:11888448-11888708 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 69-333 |
| Cow position: | chr20:13789614-13789352 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 134, 62 |
| Conread position: | 71-347 |
| Cow position: | chr20:11635455-11635737 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 138, 86 |
| Conread position: | 75-337 |
| Cow position: | chr20:8489261-8488995 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 81-251 |
| Cow position: | chr20:9333010-9333180 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 82-337 |
| Cow position: | chr20:36869726-36869470 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 88-337 |
| Cow position: | chr20:42563713-42563459 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 104-333 |
| Cow position: | chr20:1534018-1534257 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 215 |
| Conread position: | 104-338 |
| Cow position: | chr20:7227555-7227795 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 67, 53 |
Show alignments to all cow chromosomes.