Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-164
Cow position: chr22:9695553-9695386 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 1-183
Cow position: chr22:8876603-8876421 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 66

Conread position: 1-203
Cow position: chr22:44635284-44635491 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 66

Conread position: 1-205
Cow position: chr22:42976283-42976084 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 124, 66

Conread position: 1-206
Cow position: chr22:13587510-13587710 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 66

Conread position: 1-207
Cow position: chr22:10161288-10161078 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 124, 158

Conread position: 1-207
Cow position: chr22:10314181-10313977 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 126, 157

Conread position: 1-250
Cow position: chr22:22285552-22285299 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 63

Conread position: 1-255
Cow position: chr22:33093894-33093638 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 124, 63

Conread position: 1-259
Cow position: chr22:25930143-25929891 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 124, 26

Conread position: 1-267
Cow position: chr22:6305106-6305367 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 175
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 68, 63

Conread position: 1-284
Cow position: chr22:22173140-22172862 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 63

Conread position: 1-286
Cow position: chr22:23105048-23105339 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 159

Conread position: 1-292
Cow position: chr22:31154875-31155169 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 124, 77

Conread position: 1-294
Cow position: chr22:5929351-5929638 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 199
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 125, 74

Conread position: 1-323
Cow position: chr22:14098201-14098511 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 202, 9

Conread position: 1-329
Cow position: chr22:14490691-14490357 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 125, 63

Conread position: 1-331
Cow position: chr22:12060261-12060589 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 124, 67

Conread position: 1-331
Cow position: chr22:35755136-35755473 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 215
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 124, 47

Conread position: 1-337
Cow position: chr22:4709778-4710121 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 59

Conread position: 1-337
Cow position: chr22:8646235-8646568 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 125, 51

Conread position: 1-337
Cow position: chr22:9638367-9638046 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 227
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 69, 58

Conread position: 1-337
Cow position: chr22:12631285-12631618 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 124, 63

Conread position: 1-337
Cow position: chr22:37046871-37047191 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 124, 35

Conread position: 1-338
Cow position: chr22:23207082-23207417 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 128, 96

Conread position: 1-347
Cow position: chr22:33587287-33586936 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 74, 130

Conread position: 1-364
Cow position: chr22:12094849-12095201 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 255
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 54, 9

Conread position: 2-161
Cow position: chr22:34017146-34017302 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 63

Conread position: 2-327
Cow position: chr22:138327-138007 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 71, 45

Conread position: 2-331
Cow position: chr22:25201677-25201349 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 204, 77

Conread position: 2-331
Cow position: chr22:39704473-39704150 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 123, 43

Conread position: 3-255
Cow position: chr22:8194844-8194592 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 124, 14

Conread position: 3-331
Cow position: chr22:39307724-39307401 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 23

Conread position: 3-336
Cow position: chr22:38247423-38247743 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 122, 23

Conread position: 3-337
Cow position: chr22:14058815-14058478 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 57

Conread position: 3-355
Cow position: chr22:41840807-41841150 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 243
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 61

Conread position: 4-331
Cow position: chr22:28559495-28559162 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 60

Conread position: 4-333
Cow position: chr22:4636672-4636992 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 224
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 78

Conread position: 4-333
Cow position: chr22:15889356-15889030 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 180, 76

Conread position: 4-337
Cow position: chr22:41673977-41674304 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 9, 61

Conread position: 5-333
Cow position: chr22:36357604-36357274 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 227
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 7, 29

Conread position: 6-266
Cow position: chr22:23582261-23582525 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 154

Conread position: 6-333
Cow position: chr22:18844201-18844536 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 118, 285

Conread position: 6-337
Cow position: chr22:43302851-43303178 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 119, 58

Conread position: 7-333
Cow position: chr22:44608030-44607708 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 118, 51

Conread position: 12-207
Cow position: chr22:36503162-36503355 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 112

Conread position: 12-248
Cow position: chr22:33798467-33798700 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 113, 52

Conread position: 12-250
Cow position: chr22:38439830-38440066 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 33

Conread position: 12-255
Cow position: chr22:2389849-2390086 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 52

Conread position: 12-255
Cow position: chr22:3488790-3489036 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 52

Conread position: 12-274
Cow position: chr22:41032304-41032030 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 69, 52

Conread position: 12-274
Cow position: chr22:44654057-44653786 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 116, 146

Conread position: 12-284
Cow position: chr22:25842663-25842944 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 20

Conread position: 12-294
Cow position: chr22:32998201-32997920 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 150, 67

Conread position: 12-304
Cow position: chr22:15872332-15872038 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 34

Conread position: 12-333
Cow position: chr22:529382-529704 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 114, 52

Conread position: 12-333
Cow position: chr22:2415437-2415114 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 213
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 39

Conread position: 12-333
Cow position: chr22:11305433-11305101 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 157

Conread position: 12-333
Cow position: chr22:28992924-28992592 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 54, 39

Conread position: 12-334
Cow position: chr22:30630339-30630027 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 219
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 118, 55

Conread position: 12-336
Cow position: chr22:32997505-32997177 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 116, 63

Conread position: 12-355
Cow position: chr22:23010711-23011060 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 113, 24

Conread position: 13-339
Cow position: chr22:45606974-45607292 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 114, 46

Conread position: 15-242
Cow position: chr22:5296840-5296618 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 18

Conread position: 15-333
Cow position: chr22:22045293-22044989 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 211
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 125

Conread position: 15-344
Cow position: chr22:52053-51716 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 216
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 64

Conread position: 17-317
Cow position: chr22:24146609-24146303 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 62

Conread position: 20-337
Cow position: chr22:7231465-7231140 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 95

Conread position: 21-337
Cow position: chr22:31316080-31315756 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 65, 45

Conread position: 21-337
Cow position: chr22:38251855-38251532 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 11, 60

Conread position: 21-345
Cow position: chr22:32019026-32019354 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 46

Conread position: 21-369
Cow position: chr22:17677250-17676888 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 30

Conread position: 22-225
Cow position: chr22:581974-582173 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 103, 42

Conread position: 22-329
Cow position: chr22:15605886-15606180 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 108, 52

Conread position: 23-155
Cow position: chr22:10385915-10385780 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 23-338
Cow position: chr22:43045181-43045501 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 211
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 103, 49

Conread position: 24-313
Cow position: chr22:41157447-41157737 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 169

Conread position: 24-331
Cow position: chr22:23776147-23776463 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 48, 24

Conread position: 27-326
Cow position: chr22:23006756-23007059 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 81

Conread position: 32-267
Cow position: chr22:33403167-33403398 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 180, 19

Conread position: 35-337
Cow position: chr22:41035220-41034923 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 32

Conread position: 36-331
Cow position: chr22:30755759-30755459 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 54

Conread position: 44-337
Cow position: chr22:47893527-47893231 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 80, 20

Conread position: 48-284
Cow position: chr22:4996359-4996587 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 112

Conread position: 49-258
Cow position: chr22:41340945-41340737 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 15

Conread position: 49-337
Cow position: chr22:14508630-14508917 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 62

Conread position: 80-337
Cow position: chr22:46448928-46449191 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 41

Conread position: 94-274
Cow position: chr22:14448795-14448605 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 7, 68

Conread position: 95-287
Cow position: chr22:11994282-11994479 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 68

Conread position: 104-337
Cow position: chr22:45369735-45369973 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 26, 56

Conread position: 106-316
Cow position: chr22:13264865-13265076 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 40

Conread position: 130-335
Cow position: chr22:10721557-10721772 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 143-328
Cow position: chr22:11349121-11348936 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 65, 12

Conread position: 337-799
Cow position: chr22:36581099-36580646 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 9

Conread position: 338-571
Cow position: chr22:8875068-8875308 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 10, 72

Conread position: 338-658
Cow position: chr22:34607137-34607465 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 10, 41

Conread position: 341-798
Cow position: chr22:298255-297781 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 5

Conread position: 349-537
Cow position: chr22:870775-870578 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 60

Conread position: 542-781
Cow position: chr22:36591533-36591303 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 14, 42

Conread position: 547-721
Cow position: chr22:36552830-36552655 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 52

Conread position: 568-797
Cow position: chr22:8875530-8875763 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 28

Conread position: 595-799
Cow position: chr22:292519-292316 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 89, 137

Show alignments to all cow chromosomes.