Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-164 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-183 |
| Cow position: | |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 1-203 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 70, 66 |
| Conread position: | 1-205 |
| Cow position: | |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 1-206 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 66 |
| Conread position: | 1-207 |
| Cow position: | |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 124, 158 |
| Conread position: | 1-207 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 157 |
| Conread position: | 1-250 |
| Cow position: | |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-255 |
| Cow position: | |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-259 |
| Cow position: | |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 1-267 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 1-284 |
| Cow position: | |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 1-286 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-292 |
| Cow position: | |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 124, 77 |
| Conread position: | 1-294 |
| Cow position: | |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 74 |
| Conread position: | 1-323 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 202, 9 |
| Conread position: | 1-329 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 125, 63 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 124, 47 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 51 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 1-338 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 96 |
| Conread position: | 1-347 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 1-364 |
| Cow position: | |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 2-161 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 63 |
| Conread position: | 2-327 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 2-331 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 204, 77 |
| Conread position: | 2-331 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 3-255 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 3-331 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 207, 23 |
| Conread position: | 3-336 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 3-337 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 3-355 |
| Cow position: | |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 4-331 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 4-333 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 4-333 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 180, 76 |
| Conread position: | 4-337 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 5-333 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 6-266 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 6-333 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 118, 285 |
| Conread position: | 6-337 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 7-333 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 51 |
| Conread position: | 12-207 |
| Cow position: | |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 12-248 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-250 |
| Cow position: | |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 12-255 |
| Cow position: | |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 12-255 |
| Cow position: | |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 12-274 |
| Cow position: | |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 12-274 |
| Cow position: | |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 116, 146 |
| Conread position: | 12-284 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 12-294 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 150, 67 |
| Conread position: | 12-304 |
| Cow position: | |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 12-334 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 55 |
| Conread position: | 12-336 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 63 |
| Conread position: | 12-355 |
| Cow position: | |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 113, 24 |
| Conread position: | 13-339 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 46 |
| Conread position: | 15-242 |
| Cow position: | |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 15-333 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 125 |
| Conread position: | 15-344 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 17-317 |
| Cow position: | |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 20-337 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 21-337 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 21-337 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 21-345 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 21-369 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 22-225 |
| Cow position: | |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 22-329 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 108, 52 |
| Conread position: | 23-155 |
| Cow position: | |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 23-338 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 103, 49 |
| Conread position: | 24-313 |
| Cow position: | |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 169 |
| Conread position: | 24-331 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 27-326 |
| Cow position: | |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 32-267 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 180, 19 |
| Conread position: | 35-337 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 36-331 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 54 |
| Conread position: | 44-337 |
| Cow position: | |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 48-284 |
| Cow position: | |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 80, 112 |
| Conread position: | 49-258 |
| Cow position: | |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 49-337 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 80-337 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 94-274 |
| Cow position: | |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 95-287 |
| Cow position: | |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 104-337 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 106-316 |
| Cow position: | |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 130-335 |
| Cow position: | |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 143-328 |
| Cow position: | |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 337-799 |
| Cow position: | |
| Alignm length: | 470 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 338-571 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 338-658 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 341-798 |
| Cow position: | |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 349-537 |
| Cow position: | |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 542-781 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 547-721 |
| Cow position: | |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 568-797 |
| Cow position: | |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 595-799 |
| Cow position: | |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 89, 137 |
Show alignments to all cow chromosomes.