Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-184 |
| Cow position: | chr23:6688504-6688686 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 124, 9 |
| Conread position: | 1-185 |
| Cow position: | chr23:6444183-6444000 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 1-185 |
| Cow position: | chr23:17187342-17187159 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 124, 57 |
| Conread position: | 1-200 |
| Cow position: | chr23:6698383-6698183 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 128, 158 |
| Conread position: | 1-251 |
| Cow position: | chr23:6223366-6223114 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 1-255 |
| Cow position: | chr23:11405135-11405391 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 124, 167 |
| Conread position: | 1-255 |
| Cow position: | chr23:29471761-29472016 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-264 |
| Cow position: | chr23:30186684-30186943 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 124, 12 |
| Conread position: | 1-269 |
| Cow position: | chr23:14267845-14267576 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 1-271 |
| Cow position: | chr23:10955814-10955541 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 1-291 |
| Cow position: | chr23:39754105-39753818 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 1-305 |
| Cow position: | chr23:7129605-7129907 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 128 |
| Conread position: | 1-322 |
| Cow position: | chr23:36675606-36675926 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-330 |
| Cow position: | chr23:13409901-13409582 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 1-331 |
| Cow position: | chr23:9562545-9562865 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 207, 73 |
| Conread position: | 1-331 |
| Cow position: | chr23:12828865-12829182 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 40 |
| Conread position: | 1-336 |
| Cow position: | chr23:41193586-41193233 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 189, 166 |
| Conread position: | 1-337 |
| Cow position: | chr23:21666760-21666437 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 1-345 |
| Cow position: | chr23:40890324-40889973 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 110 |
| Conread position: | 1-364 |
| Cow position: | chr23:31757619-31757241 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 162 |
| Conread position: | 1-370 |
| Cow position: | chr23:8323303-8322935 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 2-187 |
| Cow position: | chr23:3451655-3451840 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 2-219 |
| Cow position: | chr23:36688460-36688680 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 2-296 |
| Cow position: | chr23:29487644-29487368 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 2-337 |
| Cow position: | chr23:36308755-36308419 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 159 |
| Conread position: | 2-338 |
| Cow position: | chr23:35275772-35275433 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 123, 71 |
| Conread position: | 3-192 |
| Cow position: | chr23:9540649-9540841 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 75, 8 |
| Conread position: | 3-205 |
| Cow position: | chr23:40490291-40490084 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 160 |
| Conread position: | 3-328 |
| Cow position: | chr23:10078587-10078917 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 6-316 |
| Cow position: | chr23:8388595-8388906 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 119, 71 |
| Conread position: | 7-350 |
| Cow position: | chr23:36014201-36013866 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 11-337 |
| Cow position: | chr23:18446595-18446269 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 12-207 |
| Cow position: | chr23:344930-345126 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 12-207 |
| Cow position: | chr23:14738439-14738242 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 148 |
| Conread position: | 12-286 |
| Cow position: | chr23:36672398-36672119 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 101 |
| Conread position: | 12-330 |
| Cow position: | chr23:25086708-25087025 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 185, 61 |
| Conread position: | 12-332 |
| Cow position: | chr23:35313711-35314026 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 195, 39 |
| Conread position: | 12-337 |
| Cow position: | chr23:10914154-10913838 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 12-338 |
| Cow position: | chr23:35324693-35325023 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 13-243 |
| Cow position: | chr23:11088453-11088679 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 13-346 |
| Cow position: | chr23:30682383-30682723 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 15-328 |
| Cow position: | chr23:31136639-31136957 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 113, 145 |
| Conread position: | 15-333 |
| Cow position: | chr23:23192900-23193217 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 194, 129 |
| Conread position: | 19-207 |
| Cow position: | chr23:29625507-29625322 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 21-192 |
| Cow position: | chr23:31653730-31653562 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 21-335 |
| Cow position: | chr23:30546663-30546982 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 21-338 |
| Cow position: | chr23:25554124-25553798 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 51, 140 |
| Conread position: | 24-274 |
| Cow position: | chr23:9228908-9228655 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 24-359 |
| Cow position: | chr23:25030643-25030963 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 25-208 |
| Cow position: | chr23:9215358-9215178 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 56 |
| Conread position: | 27-248 |
| Cow position: | chr23:31121804-31122026 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 41 |
| Conread position: | 27-329 |
| Cow position: | chr23:20379675-20379369 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 28-250 |
| Cow position: | chr23:16219158-16218932 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 40-275 |
| Cow position: | chr23:9393368-9393604 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 120 |
| Conread position: | 41-337 |
| Cow position: | chr23:11024065-11024361 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 100 |
| Conread position: | 49-356 |
| Cow position: | chr23:10421371-10421686 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 69-237 |
| Cow position: | chr23:16610916-16611088 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 75-337 |
| Cow position: | chr23:35281043-35281313 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 77-332 |
| Cow position: | chr23:8100714-8100461 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 81-337 |
| Cow position: | chr23:11967752-11967505 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 134-333 |
| Cow position: | chr23:22873335-22873538 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 335-680 |
| Cow position: | chr23:6216646-6217017 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 338-550 |
| Cow position: | chr23:3863026-3863246 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 338-799 |
| Cow position: | chr23:13509137-13509584 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 346-799 |
| Cow position: | chr23:26836367-26836815 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 62 |
Show alignments to all cow chromosomes.