Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-139 |
| Cow position: | |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-207 |
| Cow position: | |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-228 |
| Cow position: | |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 1-249 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 1-251 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 1-255 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 1-280 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 122, 63 |
| Conread position: | 1-305 |
| Cow position: | |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 161 |
| Conread position: | 1-312 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 1-326 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 128, 97 |
| Conread position: | 1-328 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 1-328 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 156 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 1-333 |
| Cow position: | |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 2-155 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 123, 68 |
| Conread position: | 2-302 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 2-316 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 2-337 |
| Cow position: | |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 157 |
| Conread position: | 3-206 |
| Cow position: | |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 157 |
| Conread position: | 3-263 |
| Cow position: | |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 121, 65 |
| Conread position: | 3-331 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 4-337 |
| Cow position: | |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 6-272 |
| Cow position: | |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 119, 54 |
| Conread position: | 12-183 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 147 |
| Conread position: | 12-194 |
| Cow position: | |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 12-206 |
| Cow position: | |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 12-207 |
| Cow position: | |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 148 |
| Conread position: | 12-250 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 12-272 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 12-313 |
| Cow position: | |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 12-331 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 12-334 |
| Cow position: | |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 147 |
| Conread position: | 12-335 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 12-338 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 12-355 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 133, 95 |
| Conread position: | 13-333 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 112, 206 |
| Conread position: | 14-331 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 15-251 |
| Cow position: | |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 145 |
| Conread position: | 15-333 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 49 |
| Conread position: | 17-321 |
| Cow position: | |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 17-338 |
| Cow position: | |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 65, 154 |
| Conread position: | 21-255 |
| Cow position: | |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 24-207 |
| Cow position: | |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 23 |
| Conread position: | 24-309 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 143 |
| Conread position: | 24-337 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 24-338 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 24-370 |
| Cow position: | |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 27-302 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 27-333 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 133 |
| Conread position: | 27-338 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 28-306 |
| Cow position: | |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 48-377 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 56-329 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 77-274 |
| Cow position: | |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 81-328 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 81-337 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 122, 47 |
| Conread position: | 129-333 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 27 |
| Conread position: | 146-338 |
| Cow position: | |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 338-798 |
| Cow position: | |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 617-795 |
| Cow position: | |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 25 |
Show alignments to all cow chromosomes.