Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-121 |
| Cow position: | |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-193 |
| Cow position: | |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 1-207 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 1-225 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 124, 158 |
| Conread position: | 1-227 |
| Cow position: | |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 1-228 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 1-249 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 1-284 |
| Cow position: | |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 131, 74 |
| Conread position: | 1-296 |
| Cow position: | |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 1-315 |
| Cow position: | |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 160 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 1-332 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 1-333 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 79 |
| Conread position: | 1-333 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 1-336 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 63, 160 |
| Conread position: | 1-355 |
| Cow position: | |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 2-183 |
| Cow position: | |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 3-274 |
| Cow position: | |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 3-300 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 3-319 |
| Cow position: | |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 3-329 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 121, 65 |
| Conread position: | 3-336 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 5-310 |
| Cow position: | |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 6-207 |
| Cow position: | |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 6-338 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 53 |
| Conread position: | 10-344 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 68 |
| Conread position: | 12-163 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 12-204 |
| Cow position: | |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-206 |
| Cow position: | |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 12-207 |
| Cow position: | |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 12-251 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 147 |
| Conread position: | 12-306 |
| Cow position: | |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 12-323 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 154 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 12-334 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-336 |
| Cow position: | |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 196, 69 |
| Conread position: | 12-336 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 113, 69 |
| Conread position: | 12-337 |
| Cow position: | |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 12-337 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 147 |
| Conread position: | 12-337 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 145 |
| Conread position: | 12-345 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 14-304 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 14-327 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 15-337 |
| Cow position: | |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 16-251 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 17-333 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 17-333 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 17-339 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 206 |
| Conread position: | 18-337 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 110, 148 |
| Conread position: | 19-340 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 106, 78 |
| Conread position: | 20-274 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 21-332 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 21-333 |
| Cow position: | |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 22-338 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 23-306 |
| Cow position: | |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 30-322 |
| Cow position: | |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 40-190 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 42-311 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 43-228 |
| Cow position: | |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 48-206 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 48-233 |
| Cow position: | |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 49-337 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 50-333 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 50-337 |
| Cow position: | |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 51-327 |
| Cow position: | |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 75-328 |
| Cow position: | |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 76-336 |
| Cow position: | |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 76-337 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 90 |
| Conread position: | 77-292 |
| Cow position: | |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 87-338 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 103-328 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 104-336 |
| Cow position: | |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 117-337 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 126-316 |
| Cow position: | |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 136-337 |
| Cow position: | |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 142-337 |
| Cow position: | |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 143-337 |
| Cow position: | |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 142 |
| Conread position: | 357-798 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 147 |
Show alignments to all cow chromosomes.