Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-121
Cow position: chr25:8630994-8631114 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-193
Cow position: chr25:22713077-22712889 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 127, 63

Conread position: 1-207
Cow position: chr25:40389397-40389601 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 74

Conread position: 1-225
Cow position: chr25:8015512-8015283 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 124, 158

Conread position: 1-227
Cow position: chr25:27609505-27609281 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 123, 43

Conread position: 1-228
Cow position: chr25:17973963-17973734 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 124, 80

Conread position: 1-249
Cow position: chr25:4485467-4485220 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 132, 25

Conread position: 1-284
Cow position: chr25:30636405-30636686 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 131, 74

Conread position: 1-296
Cow position: chr25:2511977-2511674 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 126, 166

Conread position: 1-315
Cow position: chr25:478154-477832 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 234
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 80, 54

Conread position: 1-331
Cow position: chr25:14774488-14774151 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 160

Conread position: 1-331
Cow position: chr25:26755628-26755288 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 40

Conread position: 1-332
Cow position: chr25:23845509-23845818 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 25

Conread position: 1-333
Cow position: chr25:9647292-9646958 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 125, 79

Conread position: 1-333
Cow position: chr25:40321950-40322290 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 217
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 63

Conread position: 1-336
Cow position: chr25:25119363-25119036 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 68

Conread position: 1-337
Cow position: chr25:11151752-11152099 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 124, 63

Conread position: 1-337
Cow position: chr25:24077420-24077757 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 236
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 63, 160

Conread position: 1-355
Cow position: chr25:19107793-19107445 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 123, 9

Conread position: 2-183
Cow position: chr25:28262700-28262532 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 61

Conread position: 3-274
Cow position: chr25:31954627-31954898 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 122, 61

Conread position: 3-300
Cow position: chr25:34493818-34494114 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 23

Conread position: 3-319
Cow position: chr25:14995693-14995995 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 122, 57

Conread position: 3-329
Cow position: chr25:40429915-40430235 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 121, 65

Conread position: 3-336
Cow position: chr25:15284919-15284590 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 125, 70

Conread position: 5-310
Cow position: chr25:15005405-15005108 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 211
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 78

Conread position: 6-207
Cow position: chr25:17420195-17420397 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 95

Conread position: 6-338
Cow position: chr25:14012176-14011838 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 53

Conread position: 10-344
Cow position: chr25:425761-426086 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 68

Conread position: 12-163
Cow position: chr25:25705620-25705465 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 44

Conread position: 12-204
Cow position: chr25:4758956-4759143 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 113, 52

Conread position: 12-206
Cow position: chr25:40141175-40141372 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 73, 149

Conread position: 12-207
Cow position: chr25:35617197-35617004 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 113, 63

Conread position: 12-251
Cow position: chr25:18486788-18486544 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 113, 147

Conread position: 12-306
Cow position: chr25:10180906-10180611 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 99, 52

Conread position: 12-323
Cow position: chr25:747775-747476 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 113, 30

Conread position: 12-333
Cow position: chr25:9395740-9395410 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 56

Conread position: 12-333
Cow position: chr25:13241928-13241606 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 112, 154

Conread position: 12-333
Cow position: chr25:19923850-19923527 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 208
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 52

Conread position: 12-334
Cow position: chr25:24636815-24637145 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 113, 52

Conread position: 12-336
Cow position: chr25:30326050-30326366 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 196, 69

Conread position: 12-336
Cow position: chr25:34334323-34334648 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 113, 69

Conread position: 12-337
Cow position: chr25:13960388-13960063 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 214
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 54

Conread position: 12-337
Cow position: chr25:22479647-22479982 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 223
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 147

Conread position: 12-337
Cow position: chr25:28242306-28241984 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 145

Conread position: 12-345
Cow position: chr25:4522486-4522823 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 214
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 113, 61

Conread position: 14-304
Cow position: chr25:40623734-40623453 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 114, 50

Conread position: 14-327
Cow position: chr25:13005394-13005705 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 50

Conread position: 15-337
Cow position: chr25:30162842-30163166 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 18

Conread position: 16-251
Cow position: chr25:40661214-40660976 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 109, 48

Conread position: 17-333
Cow position: chr25:23672539-23672865 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 143

Conread position: 17-333
Cow position: chr25:23739914-23740247 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 147

Conread position: 17-339
Cow position: chr25:18424622-18424291 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 223
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 206

Conread position: 18-337
Cow position: chr25:2610947-2610620 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 110, 148

Conread position: 19-340
Cow position: chr25:19073953-19073632 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 106, 78

Conread position: 20-274
Cow position: chr25:10606404-10606652 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 108, 15

Conread position: 21-332
Cow position: chr25:24663966-24664276 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 105, 41

Conread position: 21-333
Cow position: chr25:10737398-10737708 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 64, 21

Conread position: 22-338
Cow position: chr25:21414156-21414463 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 67

Conread position: 23-306
Cow position: chr25:33039168-33039454 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 46

Conread position: 30-322
Cow position: chr25:30705129-30705408 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 0

Conread position: 40-190
Cow position: chr25:2619032-2619179 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 87, 28

Conread position: 42-311
Cow position: chr25:20597481-20597210 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 37

Conread position: 43-228
Cow position: chr25:34989874-34990055 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 82, 21

Conread position: 48-206
Cow position: chr25:2194646-2194489 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 20

Conread position: 48-233
Cow position: chr25:24459429-24459614 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 16

Conread position: 49-337
Cow position: chr25:32449536-32449230 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 82, 15

Conread position: 50-333
Cow position: chr25:382577-382861 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 76, 45

Conread position: 50-337
Cow position: chr25:16523365-16523071 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 76, 30

Conread position: 51-327
Cow position: chr25:4953817-4953544 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 58

Conread position: 75-328
Cow position: chr25:9909036-9908784 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 133, 82

Conread position: 76-336
Cow position: chr25:30079154-30079422 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 5, 77

Conread position: 76-337
Cow position: chr25:35084562-35084818 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 90

Conread position: 77-292
Cow position: chr25:569555-569770 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 91

Conread position: 87-338
Cow position: chr25:38359768-38359526 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 104, 26

Conread position: 103-328
Cow position: chr25:21447340-21447574 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 62

Conread position: 104-336
Cow position: chr25:12215698-12215937 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 22, 56

Conread position: 117-337
Cow position: chr25:30444950-30444719 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 126-316
Cow position: chr25:21547959-21547769 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 82, 32

Conread position: 136-337
Cow position: chr25:30112321-30112520 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 72, 22

Conread position: 142-337
Cow position: chr25:23363519-23363321 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 33

Conread position: 143-337
Cow position: chr25:33231545-33231737 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 142

Conread position: 357-798
Cow position: chr25:3378612-3378154 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 301
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 147

Show alignments to all cow chromosomes.